Fri May 10 01:30:38 UTC 2024 I: starting to build dialign/trixie/arm64 on jenkins on '2024-05-10 01:30' Fri May 10 01:30:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/34592/console.log Fri May 10 01:30:38 UTC 2024 I: Downloading source for trixie/dialign=2.2.1-12 --2024-05-10 01:30:39-- http://deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-12.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) [text/prs.lines.tag] Saving to: ‘dialign_2.2.1-12.dsc’ 0K .. 100% 266M=0s 2024-05-10 01:30:39 (266 MB/s) - ‘dialign_2.2.1-12.dsc’ saved [2101/2101] Fri May 10 01:30:39 UTC 2024 I: dialign_2.2.1-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-12 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://dialign.gobics.de/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 4319c6aa7e9318255132bc174d917c2f702edfe1 12988 dialign_2.2.1-12.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz e43bc03fde0e9bb6cc37e048aba44d347cef61d1f8cd9202a0b547dfa6037ded 12988 dialign_2.2.1-12.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz 09a6d8a1324a51a3058bb2d8bac26d5e 12988 dialign_2.2.1-12.debian.tar.xz Dgit: 7910d16ad6fde52c405b7572f69ca565f0d2ead4 debian archive/debian/2.2.1-12 https://git.dgit.debian.org/dialign -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmX1s5oUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdonnxAAjF9e8vYx/1BXNIik2NBVb2HL2dWG LqDdRh8R9I1yAOxGYzoF1wVK5BjyQ/vjrr2TgUVh6cU5E9fPulmh0ejbF4YWPL2Z emssnKF55E41kpQsmPSGmW8p4x0RLdo74Y8hv1kq49uuQLP8IYF/PWhzZmBbK1EM wLLBavLIMa1xNqVHUcOCtuCZxYoGjga+dtPfzs/lTs8xavjz+YQMmkRlm/UQ/fA9 rYHnL8WkmjpPQ8ATbBtU2WZSWiHrX2aq8q84tdYP9KKWgDQ829OEVu5RLI6WlrrH qPY8kOCN9tuuP1x5l2JT30zVuzKONqxlAXrqvfZ8mFgGhm4uF9Llwhk4C1cgc2Zz QOcP7qbsok9YiNkd9nAL8PUxeHGHLFEM3/gNWVCxllobOFH0UjSAZNEi58L8OQXI Y7J7FvOkWZUm6Mz1teEZFR2n1QUyD0XXAhnXlH2ZFlU+VbUVuMpI72/y+BmFRf3Y u938m+SMZI+I+V5dtOLtI1qrSI7n5bu6uk+MF3RIMWqL7BdioLOm+HAga4CNj6PX JcipZWJj74DMS9ozQ0JiRn1CaBXNE2JTsGuje3NyBMyM9WZ9N3k5vxzBJkAcnx4l Opn6fALEg6YoyVqKCVPO6JcUCBLopydwkGgn6BVK8DFVckTHpw2oF4zGmM7wQCNX bsSAD6LAKhutCLo= =mmr1 -----END PGP SIGNATURE----- Fri May 10 01:30:39 UTC 2024 I: Checking whether the package is not for us Fri May 10 01:30:39 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Fri May 10 01:30:39 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Fri May 10 01:31:03 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 19:53:41 -12 2025 I: pbuilder-time-stamp: 1749714821 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign_2.2.1-12.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-12.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Mar 16 14:58:34 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dialign_2.2.1-12.dsc: no acceptable signature found dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3873396/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5b7799008a3c434ea950c38cada6fd0d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3873396' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/pbuilderrc_VFUg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/b1 --logfile b1/build.log dialign_2.2.1-12.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3873396/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 75.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 18.7 MB in 0s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign_2.2.1-12_source.changes dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/reproducible-path/dialign-2.2.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dialign-2.2.1/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS dialign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS functions.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS para.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS wgt.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS anchor.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS regex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS frag_chain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int] 154 | seq_parse( char *mot_regex ) { | ^~~~~~~~~ regex.c:154:1: warning: conflicting types for 'seq_parse' In file included from regex.c:18: dialign.h:70:6: note: previous declaration of 'seq_parse' with type 'void(char *)' 70 | void seq_parse( char *mot_regex ); | ^~~~~~~~~ output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int] 64 | extern plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int] 66 | extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ dialign.c:260:1: warning: return type defaults to 'int' [-Wimplicit-int] 260 | main(int argc, char **argv) | ^~~~ functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int] 856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int] 885 | plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/dialign-2.2.1/src' make[1]: Leaving directory '/build/reproducible-path/dialign-2.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dialign/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign' in '../dialign_2.2.1-12_arm64.deb'. dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-12_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dialign_2.2.1-12_arm64.buildinfo dpkg-genchanges --build=binary -O../dialign_2.2.1-12_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3873396 and its subdirectories I: Current time: Wed Jun 11 19:54:01 -12 2025 I: pbuilder-time-stamp: 1749714841 Fri May 10 01:31:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri May 10 01:31:04 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri May 10 01:31:35 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri May 10 01:31:36 UTC 2024 I: dialign_2.2.1-12_arm64.changes: Format: 1.8 Date: Sat, 16 Mar 2024 15:55:11 +0100 Source: dialign Binary: dialign dialign-dbgsym Architecture: arm64 Version: 2.2.1-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dialign - Segment-based multiple sequence alignment Closes: 1066659 Changes: dialign (2.2.1-12) unstable; urgency=medium . * Team upload. * fix-declarations.patch: new: fix build failure. (Closes: #1066659) * Use secure URI in Homepage field. * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: fd0d6600402bf6a9b401c64812bc5150385e9ea2 71632 dialign-dbgsym_2.2.1-12_arm64.deb 04f053da1193c1a0c01552bdfed4121fb6c90bd1 5083 dialign_2.2.1-12_arm64.buildinfo 307620a4cfbd19ae15e9e094187a715ce2d3591f 137092 dialign_2.2.1-12_arm64.deb Checksums-Sha256: 8a0a720b20a7d4f930c599311c8301c154394e30f6bdeaa083bf3e4884956f00 71632 dialign-dbgsym_2.2.1-12_arm64.deb c8583c20bafa7e9beba92f02b9255acee438251aabe5832fe10b95f7e0189949 5083 dialign_2.2.1-12_arm64.buildinfo 814e69f6458ae72c53fae3ebe049699c187c7f396c44e7b8e267a295ce1cb449 137092 dialign_2.2.1-12_arm64.deb Files: c7f867d58758c9b6fa2f6e4bc99eb48e 71632 debug optional dialign-dbgsym_2.2.1-12_arm64.deb bcf34537b278080a3d966a8ccf0fd3d7 5083 science optional dialign_2.2.1-12_arm64.buildinfo 121139be9f99bcae92d77f2ff5c0bf6f 137092 science optional dialign_2.2.1-12_arm64.deb Fri May 10 01:31:37 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-34592.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/dialign_2.2.1-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/dialign_2.2.1-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/dialign_2.2.1-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/b1/dialign_2.2.1-12_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tHREW3zj/b2/dialign_2.2.1-12_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.534s) 0.534s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.027s CPU time consumed: 1.028s Fri May 10 01:31:39 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri May 10 01:31:39 UTC 2024 I: dialign from trixie built successfully and reproducibly on arm64. Fri May 10 01:31:41 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 10 01:31:41 UTC 2024 I: Submitting 8.0K b1/dialign_2.2.1-12_arm64.buildinfo.asc Fri May 10 01:31:42 UTC 2024 I: Submitting 8.0K b2/dialign_2.2.1-12_arm64.buildinfo.asc Fri May 10 01:31:43 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 10 01:31:43 UTC 2024 I: Done submitting .buildinfo files. Fri May 10 01:31:43 UTC 2024 I: Removing signed dialign_2.2.1-12_arm64.buildinfo.asc files: removed './b1/dialign_2.2.1-12_arm64.buildinfo.asc' removed './b2/dialign_2.2.1-12_arm64.buildinfo.asc'