Wed Nov 20 12:25:21 UTC 2024 I: starting to build deblur/trixie/arm64 on jenkins on '2024-11-20 12:25' Wed Nov 20 12:25:21 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_16/37111/console.log Wed Nov 20 12:25:21 UTC 2024 I: Downloading source for trixie/deblur=1.1.1-2 --2024-11-20 12:25:21-- http://deb.debian.org/debian/pool/main/d/deblur/deblur_1.1.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2090 (2.0K) [text/prs.lines.tag] Saving to: ‘deblur_1.1.1-2.dsc’ 0K .. 100% 303M=0s 2024-11-20 12:25:21 (303 MB/s) - ‘deblur_1.1.1-2.dsc’ saved [2090/2090] Wed Nov 20 12:25:21 UTC 2024 I: deblur_1.1.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: deblur Binary: deblur Architecture: all Version: 1.1.1-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/biocore/deblur Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/deblur Vcs-Git: https://salsa.debian.org/med-team/deblur.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, sortmerna (>> 4~), vsearch, python3-nose , mafft Package-List: deblur deb science optional arch=all Checksums-Sha1: e6e86817af379b29fbed698573f3463d154a16bf 3901272 deblur_1.1.1.orig.tar.gz be3cedc3c6f003c19d3099b3f9d1a43ffa879be1 3764 deblur_1.1.1-2.debian.tar.xz Checksums-Sha256: a4d60bde48de1619300a20e689cf80f367c45649f73ce7d196fcfe2db70d3d40 3901272 deblur_1.1.1.orig.tar.gz ca759dfae0f5dadd49d820dfeafc9133fbba9668de9ed841a307716a7f70cf7a 3764 deblur_1.1.1-2.debian.tar.xz Files: 38ee00ccde82293c5f122ee36dc4bf25 3901272 deblur_1.1.1.orig.tar.gz a8d923ed58e8669eed5e5911000791b0 3764 deblur_1.1.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbl1MMACgkQPCZ2P2xn 5uJB9g//eAORUtMVt6J3/YU+DnD4F+kc3+TEbfPKTsj2F+r6443a0XzNvKlJOzUS RRl24rWOXVKICQoEzQWvDKNJ4Ux6Tn83lR4EZDjCTT+9SpOl44FXLTXkw1SseMVa 3OwU4AzZ1hZqaFCsq5hV2J66fe2IeNcHi1hchPIUxQhCUCn5Lpv9tmEnxKM2gnkL GxrD6/JY358GzzURIyuBxtXc569wgtzwrbIFXwC+ZPcuzGW5Hgr6cZ4MyVYyV6Zq TswrVjBh0okobVPLOqHYe0k0Mnyuc3mW89yXBHRFnn5v+D9bBtzPWEFmT2EDFNSl OwSxXXBFBhawvVLoTpZtb029caPF/jT23boY5e0fiSgcfjm8YOKZz/2f5oAc3DLl flu3+2XlEITSZE2FLHW6prrxZFyXEliq/6yYIAzSaY8ZiB0kFVqPN1+EIJ1zsWpp UTqLiNGhIZ1iI/yH2ZKYzMrSwvVM1FnmhdBqqQH48fne/IBpfodnwx7gitnUwLNa CMZMTAOya4CS4lCqxpBLuSBkyrLkAZeIbyzzpjcgAQbT/5IhO8QouXJYfIgijonT 9EipySMMbdXogbp3JHhzxFBRpl9UW/7pD/MMHqA6dqLz4E7dc++6R6bR0GqKbcKI M9R9Y/721Bb6+e1abl37wouM19WZF2pQ9P3qPYq4Aeo1nXREQ3Q= =RW+F -----END PGP SIGNATURE----- Wed Nov 20 12:25:21 UTC 2024 I: Checking whether the package is not for us Wed Nov 20 12:25:21 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Wed Nov 20 12:25:22 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Wed Nov 20 12:25:39 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 20 00:25:23 -12 2024 I: pbuilder-time-stamp: 1732105523 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [deblur_1.1.1-2.dsc] I: copying [./deblur_1.1.1.orig.tar.gz] I: copying [./deblur_1.1.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 14 18:24:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./deblur_1.1.1-2.dsc: no acceptable signature found dpkg-source: info: extracting deblur in deblur-1.1.1 dpkg-source: info: unpacking deblur_1.1.1.orig.tar.gz dpkg-source: info: unpacking deblur_1.1.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/315146/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='99d87aa2c74d48cb97242a8522e9bed9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='315146' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3uLTAsPh/pbuilderrc_qGj9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3uLTAsPh/b1 --logfile b1/build.log deblur_1.1.1-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/315146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, sortmerna (>> 4~), vsearch, python3-nose, mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on sortmerna (>> 4~); however: Package sortmerna is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3-zombie-imp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables ruby wget 0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After unpacking 411 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sortmerna (> 4~) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3-zombie-imp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables ruby wget 0 packages upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After unpacking 411 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/315146 and its subdirectories Wed Nov 20 12:25:40 UTC 2024 W: No second build log, what happened? Wed Nov 20 12:25:40 UTC 2024 W: Downloading the build dependencies failed Wed Nov 20 12:25:40 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Nov 20 12:25:40 UTC 2024 W: Network problems are automatically rescheduled after some hours.