Fri May 10 00:55:20 UTC 2024 I: starting to build cassiopee/trixie/arm64 on jenkins on '2024-05-10 00:55' Fri May 10 00:55:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/40060/console.log Fri May 10 00:55:20 UTC 2024 I: Downloading source for trixie/cassiopee=1.0.9-4 --2024-05-10 00:55:20-- http://deb.debian.org/debian/pool/main/c/cassiopee/cassiopee_1.0.9-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2373 (2.3K) [text/prs.lines.tag] Saving to: ‘cassiopee_1.0.9-4.dsc’ 0K .. 100% 305M=0s 2024-05-10 00:55:20 (305 MB/s) - ‘cassiopee_1.0.9-4.dsc’ saved [2373/2373] Fri May 10 00:55:20 UTC 2024 I: cassiopee_1.0.9-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cassiopee Binary: cassiopee, libcassie-doc, libcassie1v5, libcassie-dev Architecture: any all Version: 1.0.9-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/osallou/cassiopee-c Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/cassiopee Vcs-Git: https://salsa.debian.org/med-team/cassiopee.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev Package-List: cassiopee deb science optional arch=any libcassie-dev deb libdevel optional arch=any libcassie-doc deb doc optional arch=all libcassie1v5 deb libs optional arch=any Checksums-Sha1: a25a0e8173ad9c5f91427f8235414ee9063d343a 60576 cassiopee_1.0.9.orig.tar.gz 788742371d6720dbb55744190dfac609174969b1 5064 cassiopee_1.0.9-4.debian.tar.xz Checksums-Sha256: f02d72bbc18e858af68fb0a25d2e5d00b52d3ab5ef33d2e6731d8ff3d8bce35a 60576 cassiopee_1.0.9.orig.tar.gz f91556d7d610caa52f2c79703a528e40f47169f086849fd971859eef67c05460 5064 cassiopee_1.0.9-4.debian.tar.xz Files: 4fc0d2239a849e8075e2941210455bec 60576 cassiopee_1.0.9.orig.tar.gz c426bd10014f9753db9be7211feb916c 5064 cassiopee_1.0.9-4.debian.tar.xz Dgit: 2a53a1a0bd35877cf5f23429fe18c5e34db10036 debian archive/debian/1.0.9-4 https://git.dgit.debian.org/cassiopee -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWALicUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoE2w/+Pd3wWjPJ5RpGgk2K2xlqmQhbCZA6 r4W5iRwKZR0dMO8emtrdEdvnwgZiTjIYUt33WlTY1l/jw2qWKdPTDTcy0s4A2qug xy1nfvtOz6dN4eeO8PulhCbxLFNBXceMNFj/ozFhS9mFg+UixxbEIuaZ1iuWoWH2 0bRqT/FdmbNevQiKrttpKR1yqD4D3SnrktsQzdN01jfbGWAFRK8jbo2ZSW1jY5PQ CwZY0bofxtgPnyALd/hyZY6EGbf5hZ6/wvtyGuNWzmdwrkR0heO+uoQW/L0NQ2iB qGsUyOfX3bGPTldWX7jjlY3oXUF7d1HLAieJT/h5Xpyj+q8zBgJg6pKT1QR/8CDD 1oy4b0CvGnepzemHAkUW2OQtUZd+gVMi9/HmCxOdOG1B7QH7cb4ZCwvk3G3mID75 JfV5oHmY34egmeciKuMAKZyaVFQIRzuDOpMKMLxVGBwqbXhS61j9CpAJSVqcke4V gnaNTFBJH8vdkQJ8FFEfjcN2XlC/hfp5kArqrcJJGHp4qo9oly60YG9jrZlO84Zy LXbUlBlFTnEvl2wyMv1H1b7wBZenIkrRpa+vxU2nOa3/qeSiP1U3bBOFfmWhYYyC e5wVxpgVu6YumOMVPi9Dvw74L7QHNBkEBh4i8iq7fmUJiEQkbEiFEXT9a8tllsLc IgPToZlCKYFerds= =nntK -----END PGP SIGNATURE----- Fri May 10 00:55:20 UTC 2024 I: Checking whether the package is not for us Fri May 10 00:55:20 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Fri May 10 00:55:20 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Fri May 10 00:56:05 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 19:18:22 -12 2025 I: pbuilder-time-stamp: 1749712702 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cassiopee_1.0.9-4.dsc] I: copying [./cassiopee_1.0.9.orig.tar.gz] I: copying [./cassiopee_1.0.9-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 11:33:59 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cassiopee_1.0.9-4.dsc: no acceptable signature found dpkg-source: info: extracting cassiopee in cassiopee-1.0.9 dpkg-source: info: unpacking cassiopee_1.0.9.orig.tar.gz dpkg-source: info: unpacking cassiopee_1.0.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3261973/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f0f44e44ed7446d2b2aff21bb8dbb463' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3261973' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/pbuilderrc_4tIJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/b1 --logfile b1/build.log cassiopee_1.0.9-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3261973/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-glog-dev; however: Package libgoogle-glog-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgflags-dev{a} libgflags2.2{a} libgoogle-glog-dev{a} libgoogle-glog0v6t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After unpacking 621 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.2-2 [321 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-3 [412 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-1.1 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.29.2-2 [9059 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20230828-1+b1 [89.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libllvm16t64 arm64 1:16.0.6-26 [20.8 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libclang-cpp16t64 arm64 1:16.0.6-26 [10.5 MB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libclang1-16t64 arm64 1:16.0.6-26 [5927 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libfmt9 arm64 9.1.0+ds1-2 [107 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 doxygen arm64 1.9.8+ds-2+b1 [4484 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-4+b1 [194 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-2.1+b1 [10.6 MB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-2.1+b1 [311 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-4+b1 [10.2 MB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-2.1+b1 [334 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-2.1+b1 [261 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-2.1+b1 [324 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-2.1+b1 [372 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B] Get: 73 http://deb.debian.org/debian trixie/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b1 [144 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcppunit-dev arm64 1.15.1-4+b1 [205 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libgflags2.2 arm64 2.2.2-2 [71.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libgflags-dev arm64 2.2.2-2 [91.4 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libgoogle-glog0v6t64 arm64 0.6.0-2.1 [59.6 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgoogle-glog-dev arm64 0.6.0-2.1 [97.7 kB] Fetched 105 MB in 0s (235 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cassiopee-1.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cassiopee_1.0.9-4_source.changes dpkg-buildpackage: info: source package cassiopee dpkg-buildpackage: info: source version 1.0.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams serialization -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (2.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/CMakeFiles 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/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src/CMakeFiles/cassie.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/build make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/cassie.dir/cassiopee.cxx.o cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -Dcassie_EXPORTS -I/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/CMakeFiles/cassie.dir/cassiopee.cxx.o -MF CMakeFiles/cassie.dir/cassiopee.cxx.o.d -o CMakeFiles/cassie.dir/cassiopee.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx [ 22%] Generating API documentation with Doxygen cd /build/reproducible-path/cassiopee-1.0.9 && /usr/bin/doxygen /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile warning: Tag 'TCL_SUBST' at line 203 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 327 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 547 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 839 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 935 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 941 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1132 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1159 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1297 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1395 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1401 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1566 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1578 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1587 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1617 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1622 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1762 of file '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:324: warning: Compound per_position is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:223: warning: Member seq_length (variable) of class CassieIndexer is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:353: warning: Member morphisms (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:424: warning: Member pattern_length (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: argument 'array' of command @param is not found in the argument list of CassieSearch::search(string suffixes[]) /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: The following parameter of CassieSearch::search(string suffixes[]) is not documented: parameter 'suffixes' /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:49: warning: Member pos (variable) of class Match is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:326: warning: Member operator()(const Match *struct1, const Match *struct2) (function) of struct per_position is not documented. Doxygen version used: 1.9.8 Notice: Output directory 'doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/cassiopee-1.0.9/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file src/Cassiopee.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Ambiguous... Generating docs for compound CassieIndexer... Generating docs for compound CassieSearch... Generating docs for compound CassiopeeUtils... Generating docs for compound Match... Generating docs for compound per_position... Generating docs for compound TreeNode... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 145/65536 hits=236 misses=150 symbol lookup cache used 125/65536 hits=429 misses=125 finished... make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 22%] Built target doc [ 33%] Linking CXX shared library ../lib/libcassie.so cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassie.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcassie.so.1 -o ../lib/libcassie.so.1.0.0 CMakeFiles/cassie.dir/cassiopee.cxx.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib: -lglog /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.83.0 cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libcassie.so.1.0.0 ../lib/libcassie.so.1 ../lib/libcassie.so make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 33%] Built target cassie make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/depend make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/depend make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/depend make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu 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/build/reproducible-path/cassiopee-1.0.9/test /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/test_cassiopee.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/build make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/build make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/build make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 66%] Building CXX object test/CMakeFiles/test_cassiopee.dir/test.cxx.o [ 66%] Building CXX object src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o [ 66%] Building CXX object src/CMakeFiles/cassiopee.dir/cassie.cxx.o cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin -I/build/reproducible-path/cassiopee-1.0.9/test/src -I/build/reproducible-path/cassiopee-1.0.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT test/CMakeFiles/test_cassiopee.dir/test.cxx.o -MF CMakeFiles/test_cassiopee.dir/test.cxx.o.d -o CMakeFiles/test_cassiopee.dir/test.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/test/test.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o -MF CMakeFiles/cassiopeeknife.dir/knife.cxx.o.d -o CMakeFiles/cassiopeeknife.dir/knife.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopee.dir/cassie.cxx.o -MF CMakeFiles/cassiopee.dir/cassie.cxx.o.d -o CMakeFiles/cassiopee.dir/cassie.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx [ 77%] Linking CXX executable ../bin/cassiopeeknife cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopeeknife.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopeeknife.dir/knife.cxx.o -o ../bin/cassiopeeknife -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 77%] Built target cassiopeeknife [ 88%] Linking CXX executable ../bin/cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopee.dir/cassie.cxx.o -o ../bin/cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [ 88%] Built target cassiopee [100%] Linking CXX executable ../bin/test_cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_cassiopee.dir/test.cxx.o -o ../bin/test_cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/lib ../lib/libcassie.so.1.0.0 -lglog -lcppunit /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' [100%] Built target test_cassiopee make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestCassie 1: Test command: /build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu/bin/test_cassiopee 1: Working Directory: /build/reproducible-path/cassiopee-1.0.9 1: Test timeout computed to be: 10000000 1: WARNING: Logging before InitGoogleLogging() is written to STDERR 1: I20250612 07:18:57.279731 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.279829 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.281387 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.281411 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.281597 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.281611 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.281980 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.281993 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.282197 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.282212 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.283509 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.283524 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.284842 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.284861 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.285223 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.285238 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.285598 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.285612 3268977 cassiopee.cxx:651] Indexing test/protein.txt 1: I20250612 07:18:57.285682 3268977 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250612 07:18:57.285696 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.287989 3268977 cassiopee.cxx:693] Maximum index depth: 75 1: I20250612 07:18:57.293491 3268977 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250612 07:18:57.293531 3268977 cassiopee.cxx:638] Index file exists, loading it 1: I20250612 07:18:57.299577 3268977 cassiopee.cxx:743] Loaded 2504 nodes 1: I20250612 07:18:57.300595 3268977 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250612 07:18:57.300635 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250612 07:18:57.302624 3268977 cassiopee.cxx:693] Maximum index depth: 75 1: I20250612 07:18:57.307953 3268977 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250612 07:18:57.308012 3268977 cassiopee.cxx:638] Index file exists, loading it 1: I20250612 07:18:57.313958 3268977 cassiopee.cxx:743] Loaded 2504 nodes 1: I20250612 07:18:57.314568 3268977 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250612 07:18:57.314603 3268977 cassiopee.cxx:651] Indexing test/sequence.txt 1: OK (13) 1/1 Test #1: TestCassie ....................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.05 sec make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/cassiopee-1.0.9/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/CassiopeeConfig.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0 -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/Cassiopee.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree.hh -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree_util.hh make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9' rm -f doc/html/jquery.js dh_install make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcassie-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cassiopee' in '../cassiopee_1.0.9-4_arm64.deb'. dpkg-deb: building package 'cassiopee-dbgsym' in '../cassiopee-dbgsym_1.0.9-4_arm64.deb'. dpkg-deb: building package 'libcassie-doc' in '../libcassie-doc_1.0.9-4_all.deb'. dpkg-deb: building package 'libcassie1v5' in '../libcassie1v5_1.0.9-4_arm64.deb'. dpkg-deb: building package 'libcassie1v5-dbgsym' in '../libcassie1v5-dbgsym_1.0.9-4_arm64.deb'. dpkg-deb: building package 'libcassie-dev' in '../libcassie-dev_1.0.9-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cassiopee_1.0.9-4_arm64.buildinfo dpkg-genchanges --build=binary -O../cassiopee_1.0.9-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3261973 and its subdirectories I: Current time: Wed Jun 11 19:19:04 -12 2025 I: pbuilder-time-stamp: 1749712744 Fri May 10 00:56:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri May 10 00:56:06 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri May 10 00:56:55 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri May 10 00:56:56 UTC 2024 I: cassiopee_1.0.9-4_arm64.changes: Format: 1.8 Date: Mon, 18 Dec 2023 12:23:03 +0100 Source: cassiopee Binary: cassiopee cassiopee-dbgsym libcassie-dev libcassie-doc libcassie1v5 libcassie1v5-dbgsym Architecture: arm64 all Version: 1.0.9-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1v5 - library implementating search algorithms Closes: 1043792 Changes: cassiopee (1.0.9-4) unstable; urgency=medium . * Team upload. * d/control: declare compliance to standards version 4.6.2. * d/control: mark libcassie-doc Multi-Arch foreign. * d/clean: new: cleanup doc and test artifacts. (Closes: #1043792) * d/rules: remove clean override: deferred to d/clean. Checksums-Sha1: 1c2078579e026054939a02d5c6fee3dc2a0debc0 136656 cassiopee-dbgsym_1.0.9-4_arm64.deb 2faffe06e16168d1a79536800f2df01f59a8abb1 8089 cassiopee_1.0.9-4_arm64.buildinfo dfa18c540939d443d5d9214079020e45bfbaf3ad 16504 cassiopee_1.0.9-4_arm64.deb 49a9e2266d6de905aca1b06fb400842885ea2095 18784 libcassie-dev_1.0.9-4_arm64.deb 8f7597b06c9990522fa140e4f0b602f16a658def 51884 libcassie-doc_1.0.9-4_all.deb b71a1a01956a91e670354e0e83fe414e477b4e61 336520 libcassie1v5-dbgsym_1.0.9-4_arm64.deb 298a28eec9189b183cd22898fb14fd316a6707c1 37800 libcassie1v5_1.0.9-4_arm64.deb Checksums-Sha256: 61d93a1216f64620cac32903f781e76765820ec0dae2823ab81c432c852877c7 136656 cassiopee-dbgsym_1.0.9-4_arm64.deb 76777fe40ed33b622cf4ab93f1402d0b93b5e3e3ae23bb15e0862aeb11769d24 8089 cassiopee_1.0.9-4_arm64.buildinfo 182d5dba7d55034390ab80551777036ee2714dd0573c68aaec1eea3c676639a9 16504 cassiopee_1.0.9-4_arm64.deb a568a14989a40d6bba2dfed51eb8a9873585bd24da2df29a12c33126cfb96c89 18784 libcassie-dev_1.0.9-4_arm64.deb e8adaaab3d3accd53e8c8cc05a5407e58358830dedd931b0aafd5b606f8d7de0 51884 libcassie-doc_1.0.9-4_all.deb b77410e37642e99a50b2a441dd8f0b71664b162b8d7f9e10dcd7cca5f881eb8c 336520 libcassie1v5-dbgsym_1.0.9-4_arm64.deb 72c3347280da39df005060defa7b8e4c2dc96bacabf38cf32193145e0ea03cc5 37800 libcassie1v5_1.0.9-4_arm64.deb Files: dfcaf7a9de7bbf117f8a6a7c2634c3fb 136656 debug optional cassiopee-dbgsym_1.0.9-4_arm64.deb a0d157847f0c7e100dd94fafe227411b 8089 science optional cassiopee_1.0.9-4_arm64.buildinfo 7857cdada48970afb2270f35d40bc8e7 16504 science optional cassiopee_1.0.9-4_arm64.deb d6f55fccce157012999e11a192979135 18784 libdevel optional libcassie-dev_1.0.9-4_arm64.deb 6729ab2ed076225c46fa9337736f1cdd 51884 doc optional libcassie-doc_1.0.9-4_all.deb 9ed0ea101b591d9ec5a7c79324d32903 336520 debug optional libcassie1v5-dbgsym_1.0.9-4_arm64.deb 2eccfc0e594b27c4095996cc05a34199 37800 libs optional libcassie1v5_1.0.9-4_arm64.deb Fri May 10 00:56:57 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_14-40060.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/cassiopee_1.0.9-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/cassiopee_1.0.9-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/cassiopee_1.0.9-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/b1/cassiopee_1.0.9-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.lYDWcLSp/b2/cassiopee_1.0.9-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.380s) 0.379s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 719ms CPU time consumed: 720ms Fri May 10 00:56:58 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri May 10 00:56:58 UTC 2024 I: cassiopee from trixie built successfully and reproducibly on arm64. Fri May 10 00:56:59 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 10 00:56:59 UTC 2024 I: Submitting 12K b1/cassiopee_1.0.9-4_arm64.buildinfo.asc Fri May 10 00:57:00 UTC 2024 I: Submitting 12K b2/cassiopee_1.0.9-4_arm64.buildinfo.asc Fri May 10 00:57:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 10 00:57:01 UTC 2024 I: Done submitting .buildinfo files. Fri May 10 00:57:01 UTC 2024 I: Removing signed cassiopee_1.0.9-4_arm64.buildinfo.asc files: removed './b1/cassiopee_1.0.9-4_arm64.buildinfo.asc' removed './b2/cassiopee_1.0.9-4_arm64.buildinfo.asc'