Mon Mar 3 13:50:37 UTC 2025 I: starting to build adapterremoval/trixie/arm64 on jenkins on '2025-03-03 13:50'
Mon Mar 3 13:50:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/81901/console.log
Mon Mar 3 13:50:37 UTC 2025 I: Downloading source for trixie/adapterremoval=2.3.4-1
--2025-03-03 13:50:37-- http://deb.debian.org/debian/pool/main/a/adapterremoval/adapterremoval_2.3.4-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
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Saving to: ‘adapterremoval_2.3.4-1.dsc’
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2025-03-03 13:50:37 (318 MB/s) - ‘adapterremoval_2.3.4-1.dsc’ saved [2330/2330]
Mon Mar 3 13:50:37 UTC 2025 I: adapterremoval_2.3.4-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: adapterremoval
Binary: adapterremoval, adapterremoval-examples
Architecture: any all
Version: 2.3.4-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Kevin Murray <kdmfoss@gmail.com>
Homepage: https://github.com/MikkelSchubert/adapterremoval
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/adapterremoval
Vcs-Git: https://salsa.debian.org/med-team/adapterremoval.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount
Package-List:
adapterremoval deb science optional arch=any
adapterremoval-examples deb science optional arch=all
Checksums-Sha1:
292bec702a6a2a963ff305cbe231aab966704de3 725739 adapterremoval_2.3.4.orig.tar.gz
e4078e9d2c46a50487b8635b89added876cd577e 5488 adapterremoval_2.3.4-1.debian.tar.xz
Checksums-Sha256:
a4433a45b73ead907aede22ed0c7ea6fbc080f6de6ed7bc00f52173dfb309aa1 725739 adapterremoval_2.3.4.orig.tar.gz
a197ce19c25bcf9010f175cde523a22aa0770a065c9ab650850a1067be1257c2 5488 adapterremoval_2.3.4-1.debian.tar.xz
Files:
e0f89145a05daa011f01d3f7ad00b162 725739 adapterremoval_2.3.4.orig.tar.gz
b5e5026258f180f18a014e7fc397544a 5488 adapterremoval_2.3.4-1.debian.tar.xz
Dgit: 82a2796e96b6505b7f2e3d1cca44084f28773ed5 debian archive/debian/2.3.4-1 https://git.dgit.debian.org/adapterremoval
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Mon Mar 3 13:50:37 UTC 2025 I: Checking whether the package is not for us
Mon Mar 3 13:50:37 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net.
Mon Mar 3 13:50:37 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net.
Mon Mar 3 13:52:44 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
W: cgroups are not available on the host, not using them.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Apr 5 08:13:40 -12 2026
I: pbuilder-time-stamp: 1775420020
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [adapterremoval_2.3.4-1.dsc]
I: copying [./adapterremoval_2.3.4.orig.tar.gz]
I: copying [./adapterremoval_2.3.4-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./adapterremoval_2.3.4-1.dsc: unsupported subcommand
dpkg-source: info: extracting adapterremoval in adapterremoval-2.3.4
dpkg-source: info: unpacking adapterremoval_2.3.4.orig.tar.gz
dpkg-source: info: unpacking adapterremoval_2.3.4-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying privacy-breaches.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2792218/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2792218'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/pbuilderrc_mrLQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/b1 --logfile b1/build.log adapterremoval_2.3.4-1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/sbin/chroot'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2792218/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19916 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libgtest-dev; however:
Package libgtest-dev is not installed.
pbuilder-satisfydepends-dummy depends on discount; however:
Package discount is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded.
Need to get 21.9 MB of archives. After unpacking 87.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 discount arm64 2.2.7-2.1 [24.5 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 googletest all 1.16.0-1 [517 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Fetched 21.9 MB in 0s (154 MB/s)
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(Reading database ... 19916 files and directories currently installed.)
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Setting up libpipeline1:arm64 (1.5.8-1) ...
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Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up libmarkdown2:arm64 (2.2.7-2.1) ...
Setting up libbz2-dev:arm64 (1.0.8-6) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libgtest-dev:arm64 (1.16.0-1) ...
Setting up libtool (2.5.4-3) ...
Setting up discount (2.2.7-2.1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes
dpkg-buildpackage: info: source package adapterremoval
dpkg-buildpackage: info: source version 2.3.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j12 clean
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
Building AdapterRemoval with coverage instrumentation: no
Building AdapterRemoval with debug information: no
[0;32mCleaning tests ...[0m
[0;32mCleaning documentation ...[0m
[0;32mCleaning ...[0m
make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4/examples'
rm -f output_*
make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4/examples'
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_auto_build
make -j12 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
Building AdapterRemoval with coverage instrumentation: no
Building AdapterRemoval with debug information: no
[0;36mBuilding build/main/adapterset.o from src/adapterset.cpp[0m
[0;36mBuilding build/main/alignment.o from src/alignment.cpp[0m
[0;36mBuilding build/main/alignment_tables.o from src/alignment_tables.cpp[0m
[0;36mBuilding build/main/argparse.o from src/argparse.cpp[0m
[0;36mBuilding build/main/barcode_table.o from src/barcode_table.cpp[0m
[0;36mBuilding build/main/debug.o from src/debug.cpp[0m
[0;36mBuilding build/main/demultiplex.o from src/demultiplex.cpp[0m
src/alignment.cpp:66:2: warning: #warning SEE optimizations disabled! [-Wcpp]
66 | #warning SEE optimizations disabled!
| ^~~~~~~
[0;36mBuilding build/main/fastq.o from src/fastq.cpp[0m
[0;36mBuilding build/main/fastq_enc.o from src/fastq_enc.cpp[0m
[0;36mBuilding build/main/fastq_io.o from src/fastq_io.cpp[0m
[0;36mBuilding build/main/linereader.o from src/linereader.cpp[0m
[0;36mBuilding build/main/linereader_joined.o from src/linereader_joined.cpp[0m
[0;36mBuilding build/main/main_adapter_id.o from src/main_adapter_id.cpp[0m
[0;36mBuilding build/main/main_adapter_rm.o from src/main_adapter_rm.cpp[0m
[0;36mBuilding build/main/main_demultiplex.o from src/main_demultiplex.cpp[0m
[0;36mBuilding build/main/managed_writer.o from src/managed_writer.cpp[0m
[0;36mBuilding build/main/scheduler.o from src/scheduler.cpp[0m
[0;36mBuilding build/main/strutils.o from src/strutils.cpp[0m
[0;36mBuilding build/main/threads.o from src/threads.cpp[0m
[0;36mBuilding build/main/timer.o from src/timer.cpp[0m
[0;36mBuilding build/main/trimmed_reads.o from src/trimmed_reads.cpp[0m
[0;36mBuilding build/main/userconfig.o from src/userconfig.cpp[0m
[0;36mBuilding build/main/main.o from src/main.cpp[0m
[0;32mLinking executable build/AdapterRemoval[0m
make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
markdown README.md > README.html
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
# dh_auto_test
make test
make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
Building AdapterRemoval with coverage instrumentation: no
Building AdapterRemoval with debug information: no
[0;36mBuilding build/tests/main_test.o from tests/unit/main_test.cpp[0m
[0;36mBuilding build/tests/debug.o from src/debug.cpp[0m
[0;36mBuilding build/tests/alignment.o from src/alignment.cpp[0m
src/alignment.cpp:66:2: warning: #warning SEE optimizations disabled! [-Wcpp]
66 | #warning SEE optimizations disabled!
| ^~~~~~~
[0;36mBuilding build/tests/alignment_tables.o from src/alignment_tables.cpp[0m
[0;36mBuilding build/tests/alignment_test.o from tests/unit/alignment_test.cpp[0m
[0;36mBuilding build/tests/argparse.o from src/argparse.cpp[0m
[0;36mBuilding build/tests/argparse_test.o from tests/unit/argparse_test.cpp[0m
[0;36mBuilding build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp[0m
[0;36mBuilding build/tests/barcode_table.o from src/barcode_table.cpp[0m
[0;36mBuilding build/tests/fastq.o from src/fastq.cpp[0m
[0;36mBuilding build/tests/fastq_test.o from tests/unit/fastq_test.cpp[0m
[0;36mBuilding build/tests/fastq_enc.o from src/fastq_enc.cpp[0m
[0;36mBuilding build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp[0m
[0;36mBuilding build/tests/strutils.o from src/strutils.cpp[0m
[0;36mBuilding build/tests/strutils_test.o from tests/unit/strutils_test.cpp[0m
[0;32mLinking executable build/tests/main[0m
[0;32mRunning unit tests[0m
===============================================================================
All tests passed (827 assertions in 268 test cases)
make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
make clean_tests
make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
Building AdapterRemoval with coverage instrumentation: no
Building AdapterRemoval with debug information: no
[0;32mCleaning tests ...[0m
removed 'build/tests/main'
removed 'build/tests/strutils_test.deps'
removed 'build/tests/strutils_test.o'
removed 'build/tests/strutils.deps'
removed 'build/tests/strutils.o'
removed 'build/tests/fastq_enc_test.deps'
removed 'build/tests/fastq_enc_test.o'
removed 'build/tests/fastq_enc.deps'
removed 'build/tests/fastq_enc.o'
removed 'build/tests/fastq_test.deps'
removed 'build/tests/fastq_test.o'
removed 'build/tests/fastq.deps'
removed 'build/tests/fastq.o'
removed 'build/tests/barcode_table.deps'
removed 'build/tests/barcode_table.o'
removed 'build/tests/barcodes_test.deps'
removed 'build/tests/barcodes_test.o'
removed 'build/tests/argparse_test.deps'
removed 'build/tests/argparse_test.o'
removed 'build/tests/argparse.deps'
removed 'build/tests/argparse.o'
removed 'build/tests/alignment_test.deps'
removed 'build/tests/alignment_test.o'
removed 'build/tests/alignment_tables.deps'
removed 'build/tests/alignment_tables.o'
removed 'build/tests/alignment.deps'
removed 'build/tests/alignment.o'
removed 'build/tests/debug.deps'
removed 'build/tests/debug.o'
removed 'build/tests/main_test.deps'
removed 'build/tests/main_test.o'
removed directory 'build/tests'
make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
create-stamp debian/debhelper-build-stamp
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
make PREFIX=/build/reproducible-path/adapterremoval-2.3.4/debian/adapterremoval/usr
make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
Building AdapterRemoval with coverage instrumentation: no
Building AdapterRemoval with debug information: no
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
# Hmmm, this does nothing ...
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_install
dh_installdocs
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_installchangelogs CHANGES.md
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_fixperms
find debian -name benchmark.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4'
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.4-1_arm64.deb'.
dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_arm64.deb'.
dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.4-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.4-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../adapterremoval_2.3.4-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2792218 and its subdirectories
I: Current time: Sun Apr 5 08:15:43 -12 2026
I: pbuilder-time-stamp: 1775420143
Mon Mar 3 13:52:45 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net.
Mon Mar 3 13:52:45 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net.
Mon Mar 3 14:03:40 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
Mon Mar 3 14:03:41 UTC 2025 I: adapterremoval_2.3.4-1_arm64.changes:
Format: 1.8
Date: Sat, 01 Mar 2025 13:19:26 +0100
Source: adapterremoval
Binary: adapterremoval adapterremoval-dbgsym adapterremoval-examples
Architecture: arm64 all
Version: 2.3.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
adapterremoval - rapid adapter trimming, identification, and read merging of gene
adapterremoval-examples - rapid adapter trimming, identification, and read merging (example
Changes:
adapterremoval (2.3.4-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.3.4
* d/control: declare compliance to standards version 4.7.2.
* d/copyright: adjust Expat covered file name.
* privacy-breaches.patch: new: prevent privacy breaches.
Checksums-Sha1:
5e6266aa9eb082b7c289f590b1be91002df46157 2668944 adapterremoval-dbgsym_2.3.4-1_arm64.deb
0fdd9c6c80ee7a916b7bc9174dd6c1a973e0971d 380376 adapterremoval-examples_2.3.4-1_all.deb
62b3c435e5e16e58c81bf8b13f42a4f178b0dc2d 5409 adapterremoval_2.3.4-1_arm64.buildinfo
ac53f6ccb19a6939d9dfa75aaed3a125f1ab355b 173748 adapterremoval_2.3.4-1_arm64.deb
Checksums-Sha256:
472839d46b9f7e8f6918d64da29117a3cddd6c8859fcd8e41d750fe48803bd0e 2668944 adapterremoval-dbgsym_2.3.4-1_arm64.deb
53b817fba4239b54cec64ec3b2f7283be1c160dba8ac02e289331b4a6be96395 380376 adapterremoval-examples_2.3.4-1_all.deb
a55945e408351be363d6044520e956ee7c612e287de23c9eed4185823269ef97 5409 adapterremoval_2.3.4-1_arm64.buildinfo
e1a1dd746f467967fdaea96a31539816d707fe11242e37498c1bdf3046b92064 173748 adapterremoval_2.3.4-1_arm64.deb
Files:
3181c58410f3b3c1f342515b27aade32 2668944 debug optional adapterremoval-dbgsym_2.3.4-1_arm64.deb
5968f2244b0e4fef79eee5df552d3c42 380376 science optional adapterremoval-examples_2.3.4-1_all.deb
7e46ecc0f6fd3ff1b5c982303897de5b 5409 science optional adapterremoval_2.3.4-1_arm64.buildinfo
b746f77c571d7159be442366323b9a74 173748 science optional adapterremoval_2.3.4-1_arm64.deb
Mon Mar 3 14:03:42 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_6-81901.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/adapterremoval_2.3.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/adapterremoval_2.3.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/adapterremoval_2.3.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/b1/adapterremoval_2.3.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.P73KqO1w/b2/adapterremoval_2.3.4-1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 216ms
CPU time consumed: 217ms
Mon Mar 3 14:03:42 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Mon Mar 3 14:03:42 UTC 2025 I: adapterremoval from trixie built successfully and reproducibly on arm64.
Mon Mar 3 14:03:44 UTC 2025 I: Submitting .buildinfo files to external archives:
Mon Mar 3 14:03:44 UTC 2025 I: Submitting 8.0K b1/adapterremoval_2.3.4-1_arm64.buildinfo.asc
Mon Mar 3 14:03:44 UTC 2025 I: Submitting 8.0K b2/adapterremoval_2.3.4-1_arm64.buildinfo.asc
Mon Mar 3 14:03:45 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Mar 3 14:03:45 UTC 2025 I: Done submitting .buildinfo files.
Mon Mar 3 14:03:45 UTC 2025 I: Removing signed adapterremoval_2.3.4-1_arm64.buildinfo.asc files:
removed './b1/adapterremoval_2.3.4-1_arm64.buildinfo.asc'
removed './b2/adapterremoval_2.3.4-1_arm64.buildinfo.asc'