Tue Dec 17 20:06:25 UTC 2024 I: starting to build yanosim/trixie/amd64 on jenkins on '2024-12-17 20:06' Tue Dec 17 20:06:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/28770/console.log Tue Dec 17 20:06:25 UTC 2024 I: Downloading source for trixie/yanosim=0.1-6 --2024-12-17 20:06:26-- http://deb.debian.org/debian/pool/main/y/yanosim/yanosim_0.1-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1998 (2.0K) [text/prs.lines.tag] Saving to: ‘yanosim_0.1-6.dsc’ 0K . 100% 264M=0s 2024-12-17 20:06:26 (264 MB/s) - ‘yanosim_0.1-6.dsc’ saved [1998/1998] Tue Dec 17 20:06:26 UTC 2024 I: yanosim_0.1-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: yanosim Binary: yanosim Architecture: any Version: 0.1-6 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/bartongroup/yanosim Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/yanosim Vcs-Git: https://salsa.debian.org/med-team/yanosim.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam Package-List: yanosim deb science optional arch=any Checksums-Sha1: 9541e9b084efbb9918ed48867b247294350a0b66 7948 yanosim_0.1.orig.tar.gz 6e5818a040e3b7237133d820b11d06e1deb84ac5 3724 yanosim_0.1-6.debian.tar.xz Checksums-Sha256: cd6d732c3869f97bb0b69de13861a887e81b9c25d93c007ad9c8c4d6a29d462a 7948 yanosim_0.1.orig.tar.gz d0bba7a0e9a7302a4e94c6ef89bfc40b0d1d14d562e3b756dcd190bfb31004f6 3724 yanosim_0.1-6.debian.tar.xz Files: 4039859166283ac80a2221b08a0c3d88 7948 yanosim_0.1.orig.tar.gz 3900e9ad06c099232e34e526fe80cd6e 3724 yanosim_0.1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEE3lnVbvHK7ir4q61+p3sXeEcY/EFAmdaVQYSHGVhbWFudUBk ZWJpYW4ub3JnAAoJEPqd7F3hHGPx19IP/j1YdaBlXClULmOxSf96fysZu2FIqRfW VDsoXeHgRZn4QhgMX/JSGpX71s1t498jGtmK3XiuYYu84oak60sVXo7kqifE1qlb ZGr0ejkNjBGxn5PW99Ax9YyoV86BEN/mkifRZIyKGXRJOJR+YTUAK/pY4thBZ4eo 9WjNLP19bzTyQoiaXnErefOszZh0awlz36/0iVBxjZua245TccBg4xY59qIFPbsx gGOC7iobhuhGVtT6v+pH4C9m4pFkg1tFHs2t5JmFxAUISBOcRKdFPuH7KZ6lwM5j p+kHCnQWqmwXSxA+hHBaD+Z5kEOvPzGB1DKWk2z7zxSe0UiOSFOG/sClYKdsudmS hYUYCFFHSItwbYx8wogzQnFMRA3ajeKrTp7ZpViQDuQ9OVhuR10NDnURwj9KzfAp M97Hau5WZ0sXfL2P+Jo0VQFdtOGSWz1EnM3Gh1sKxATNghuSPRr2zXvX9CmwbODX +UJQanfOCjOGGz3qUXJ9k2voVBfrZ6nqZt9q15purvxr/BkdbLQRoSre2lFjtX5r 9TXfGIl1hODDgpfwLHhSO+mdOfBr8USLk3XBtf/GDvzZbTlDWA6V3ZCYASJiu5dW 99lyP5U0Kpo2LmBlLM5ZlL7ZX3Xyf/XWlMXWiKETs+9l8i5bOM+t5XHSIdC11ODw AwlIqwQVGvAh =+xQG -----END PGP SIGNATURE----- Tue Dec 17 20:06:26 UTC 2024 I: Checking whether the package is not for us Tue Dec 17 20:06:26 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Dec 17 20:06:26 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Dec 17 20:11:13 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 17 08:06:31 -12 2024 I: pbuilder-time-stamp: 1734465991 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [yanosim_0.1-6.dsc] I: copying [./yanosim_0.1.orig.tar.gz] I: copying [./yanosim_0.1-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 12 03:14:14 2024 gpgv: using RSA key 13796755BBC72BB8ABE2AEB5FA9DEC5DE11C63F1 gpgv: issuer "eamanu@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./yanosim_0.1-6.dsc: no acceptable signature found dpkg-source: info: extracting yanosim in yanosim-0.1 dpkg-source: info: unpacking yanosim_0.1.orig.tar.gz dpkg-source: info: unpacking yanosim_0.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3343835/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7095e349a3f94c0ca433cb8c280286a4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3343835' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/pbuilderrc_m5pV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/b1 --logfile b1/build.log yanosim_0.1-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3343835/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19959 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 34.8 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.1+ds-2+b2 [4412 kB] Fetched 34.8 MB in 2s (18.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19959 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20279 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/yanosim-0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../yanosim_0.1-6_source.changes dpkg-buildpackage: info: source package yanosim dpkg-buildpackage: info: source version 0.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Arias dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim copying yanosim/simulate.py -> /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim copying yanosim/model.py -> /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim copying yanosim/__init__.py -> /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim copying yanosim/main.py -> /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim copying yanosim/utils.py -> /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/yanosim/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/yanosim-0.1/debian/yanosim running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages creating /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/simulate.py -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim creating /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/__pycache__ copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/__pycache__ copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/model.py -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/__init__.py -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/main.py -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim copying /build/reproducible-path/yanosim-0.1/.pybuild/cpython3_3.12_yanosim/build/yanosim/utils.py -> /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim byte-compiling /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/simulate.py to simulate.cpython-312.pyc byte-compiling /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/main.py to main.cpython-312.pyc byte-compiling /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim/utils.py to utils.cpython-312.pyc running install_egg_info running egg_info creating yanosim.egg-info writing yanosim.egg-info/PKG-INFO writing dependency_links to yanosim.egg-info/dependency_links.txt writing entry points to yanosim.egg-info/entry_points.txt writing requirements to yanosim.egg-info/requires.txt writing top-level names to yanosim.egg-info/top_level.txt writing manifest file 'yanosim.egg-info/SOURCES.txt' reading manifest file 'yanosim.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'yanosim.egg-info/SOURCES.txt' Copying yanosim.egg-info to /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/lib/python3.12/dist-packages/yanosim-0.1.egg-info Skipping SOURCES.txt running install_scripts Installing yanosim script to /build/reproducible-path/yanosim-0.1/debian/yanosim/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package yanosim: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'yanosim' in '../yanosim_0.1-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../yanosim_0.1-6_amd64.buildinfo dpkg-genchanges --build=binary -O../yanosim_0.1-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3343835 and its subdirectories I: Current time: Tue Dec 17 08:11:12 -12 2024 I: pbuilder-time-stamp: 1734466272 Tue Dec 17 20:11:13 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Dec 17 20:11:13 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Dec 17 20:12:31 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Dec 17 20:12:32 UTC 2024 I: yanosim_0.1-6_amd64.changes: Format: 1.8 Date: Wed, 11 Dec 2024 23:37:30 -0300 Source: yanosim Binary: yanosim Architecture: amd64 Version: 0.1-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Emmanuel Arias Description: yanosim - read simulator nanopore DRS datasets Changes: yanosim (0.1-6) unstable; urgency=medium . * Team upload. * d/patches/fix-syntax-warning.patch: Add patch to fix SyntaxWarning during the build. Checksums-Sha1: 965e2356d1fa63c58d120f091ecc8ad8766e52ee 6519 yanosim_0.1-6_amd64.buildinfo 12a327319e0c6164cb25ea7158203434f6ba0442 9764 yanosim_0.1-6_amd64.deb Checksums-Sha256: b1dab8d5a4ae582f82e58da082c529ac2069e93105562375108fed29934c53d1 6519 yanosim_0.1-6_amd64.buildinfo 5ac4b2c04e18ef0d5be67954dc0eae1b5ecf395d76a58cd554041d3bc8423d22 9764 yanosim_0.1-6_amd64.deb Files: e845a9fe46c9be1c003c8654f17ab0ec 6519 science optional yanosim_0.1-6_amd64.buildinfo 402bcc7544efe334adab477041af987d 9764 science optional yanosim_0.1-6_amd64.deb Tue Dec 17 20:12:33 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_29-28770.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/yanosim_0.1-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/yanosim_0.1-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/yanosim_0.1-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/b1/yanosim_0.1-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.xsmeuOci/b2/yanosim_0.1-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.330s) 0.330s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 630ms CPU time consumed: 631ms Tue Dec 17 20:12:33 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 17 20:12:33 UTC 2024 I: yanosim from trixie built successfully and reproducibly on amd64. Tue Dec 17 20:12:35 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 17 20:12:35 UTC 2024 I: Submitting 8.0K b1/yanosim_0.1-6_amd64.buildinfo.asc Tue Dec 17 20:12:35 UTC 2024 I: Submitting 8.0K b2/yanosim_0.1-6_amd64.buildinfo.asc Tue Dec 17 20:12:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 17 20:12:36 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 17 20:12:36 UTC 2024 I: Removing signed yanosim_0.1-6_amd64.buildinfo.asc files: removed './b1/yanosim_0.1-6_amd64.buildinfo.asc' removed './b2/yanosim_0.1-6_amd64.buildinfo.asc'