Wed May 8 17:43:27 UTC 2024 I: starting to build unifrac/trixie/amd64 on jenkins on '2024-05-08 17:43' Wed May 8 17:43:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/20007/console.log Wed May 8 17:43:27 UTC 2024 I: Downloading source for trixie/unifrac=1.3-2 --2024-05-08 17:43:27-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2260 (2.2K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-2.dsc’ 0K .. 100% 334M=0s 2024-05-08 17:43:27 (334 MB/s) - ‘unifrac_1.3-2.dsc’ saved [2260/2260] Wed May 8 17:43:27 UTC 2024 I: unifrac_1.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.3-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~) , python3-iow , libssu-dev (>= 1.4-2~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: ce9c8b95b5567503d21902912ac222f1e7f27b28 65918 unifrac_1.3.orig.tar.gz 84e74a3ba3a7e3a18dbbb43755ea0a67d5a4b759 7420 unifrac_1.3-2.debian.tar.xz Checksums-Sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377 65918 unifrac_1.3.orig.tar.gz 085e70c90c853e2acb9c68c3a3e9a93fc0d484b6cc6702951d605d93a4274f8e 7420 unifrac_1.3-2.debian.tar.xz Files: 5b9f4c8ff4caf738771a7c467ce6e043 65918 unifrac_1.3.orig.tar.gz c334e6f7606533f5f50b74eec252624e 7420 unifrac_1.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmV/VeQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG/XA//XzV7zZtIIX6zrx/7NetIFOt4ZFRU8lOc u50DwXd+KNI2OGHIhuBJuX5E4EVCkcUU5lkJfTgdAiayzWRko0Tfxg0R/JajZyzR HBUews5jA+MZjjzBCWmNIOL9So8R7h5yXxjCx3ghlVGpMuoe1BhAfrAC1RZqaV9U cJgmXVm36arxs9Cr11yqNr6dImd5fvn7hOk/e1B1/Feolk0Bl6c5rs0jGYnKLTbZ r8deZWwM14kAj8T+zLg4Tdt7z8qRC5Kb+l206jOJi/l/6t9icGiZJrdsLZWaqXtB 26yazXerhpjvDZT8TW5J+CA0RFaekGET2D0utGk8uol4PKxff3FXQnUbUzGDosZI JUCNa/s3RRAI3bkQ9V2P+6ylyHXM6chEKm3QbFsZBGEIXSagni8lOWiBozd/uYjA CEUcMUtz1quADYI+woHKRftO2C6FsAYesTvT0iYfIhvPPtkvhqkfGCkpcZo/Hn4T ZDvRUjvyxixCCd2rWfjvBqvDBFqMvgZhgvqLnKknSxX7ZMFmtYIphyiCIC5g5aLU +q7kxquVJRVmpPQBGxAfnVo8g/osPOFPZiiHRlJe/obKL5xRVvf2QLVPm7J4cn8G DctWahpHGFjZfCWExQpeK6lZqQvC/C1KV7X8kU6JrI+DKt/Kv4TvdM6vVTxFC9GW mt6Qu4ZLLB0= =dpW/ -----END PGP SIGNATURE----- Wed May 8 17:43:27 UTC 2024 I: Checking whether the package is not for us Wed May 8 17:43:27 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed May 8 17:43:27 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed May 8 17:49:09 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 10 12:06:31 -12 2025 I: pbuilder-time-stamp: 1749600391 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-2.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 17 20:11:16 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-2.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/612970/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='99ad6c123c804386b89a0704466301ee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='612970' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/pbuilderrc_QI1k --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/b1 --logfile b1/build.log unifrac_1.3-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/612970/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~), python3-iow, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.5.8-3~); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtmglib3{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-asttokens{a} python3-attr{a} python3-biom-format{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-executing{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-iow{a} python3-ipython{a} python3-jedi{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-mpmath{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-skbio{a} python3-stack-data{a} python3-sympy{a} python3-tk{a} python3-traitlets{a} python3-typeshed{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wcwidth{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After unpacking 700 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dh-exec amd64 0.29 [25.4 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 81 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 87 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.7.1-3 [547 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libtmglib3 amd64 3.12.0-3 [127 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 liblapacke amd64 3.12.0-3 [379 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 134 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 138 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libssu0 amd64 1.4-3+b2 [155 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libssu-dev amd64 1.4-3+b2 [9888 B] Get: 143 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-14+b1 [21.2 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 152 http://deb.debian.org/debian trixie/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 156 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.10.0-1+b3 [1400 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get: 171 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.15.2-3 [182 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.12-7 [3869 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-5.1 [170 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.5.0-2 [90.7 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 194 http://deb.debian.org/debian trixie/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 python3-prompt-toolkit all 3.0.43-2 [276 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 python3-pure-eval all 0.2.2-2 [11.0 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.5.9-4 [875 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-iow amd64 1.0.6-5 [611 kB] Fetched 154 MB in 26s (5947 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-2_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf unifrac.egg-info unifrac/_api.c make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/unifrac x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c unifrac/_api.c -o build/temp.linux-x86_64-cpython-312/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23770:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23770 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27151:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27151 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/unifrac/_api.o -L/usr/lib/x86_64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/unifrac x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c unifrac/_api.c -o build/temp.linux-x86_64-cpython-311/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23770:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23770 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27151:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27151 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/unifrac/_api.o -L/usr/lib/x86_64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_api.cpython-311-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build; python3.12 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok test_unweighted_fp32_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok test_unweighted_fp64_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok test_unweighted_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok test_meta_validation (unifrac.tests.test_methods.StateUnifracTests.test_meta_validation) ... ok ---------------------------------------------------------------------- Ran 49 tests in 27.420s OK I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build; python3.11 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok test_unweighted_fp32_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok test_unweighted_fp64_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok test_unweighted_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok test_meta_validation (unifrac.tests.test_methods.StateUnifracTests.test_meta_validation) ... ok ---------------------------------------------------------------------- Ran 49 tests in 20.996s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12 creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_meta.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_methods.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_meta.py to _meta.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_methods.py to _methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_api.py to test_api.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11 creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/_methods.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/_meta.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_api.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/_meta.py to _meta.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/_methods.py to _methods.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/test_api.py to test_api.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_python3 dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-2_amd64.deb'. dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-2_amd64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/612970 and its subdirectories I: Current time: Tue Jun 10 12:12:09 -12 2025 I: pbuilder-time-stamp: 1749600729 Wed May 8 17:49:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed May 8 17:49:10 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed May 8 18:05:15 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed May 8 18:05:16 UTC 2024 I: unifrac_1.3-2_amd64.changes: Format: 1.8 Date: Sun, 17 Dec 2023 21:02:39 +0100 Source: unifrac Binary: python3-unifrac python3-unifrac-dbgsym Architecture: amd64 Version: 1.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-unifrac - high-performance phylogenetic diversity calculations Closes: 1058015 Changes: unifrac (1.3-2) unstable; urgency=medium . * execute dh_numpy3 after dh_python3 to assign python3-numpy-abi * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * Drop cython3 dependency from binary package Closes: #1058015 Checksums-Sha1: f860e14a5968debb54beec0f29f5d04c0c280c4a 990112 python3-unifrac-dbgsym_1.3-2_amd64.deb 54fd01e54a8ab7f4e22edcbe38bd07bbdefe3823 206000 python3-unifrac_1.3-2_amd64.deb cb2a76b283e7343f81eef009ef8c472e5c021d5d 11127 unifrac_1.3-2_amd64.buildinfo Checksums-Sha256: cdd0407f69a41765dfeaf911c4d677346f1a1a27da40ace5e06b92dfdfcec4d0 990112 python3-unifrac-dbgsym_1.3-2_amd64.deb 6a0176577156e6fd60e8880a07d2fdcf73ccde37bfd855a347be579b06f04525 206000 python3-unifrac_1.3-2_amd64.deb e9372192870540f47748831549c7d96de8cb9badda195e756b07e96d3a6dbfc1 11127 unifrac_1.3-2_amd64.buildinfo Files: 856ade3ae9412e16a5b0f8ce3c7df4a6 990112 debug optional python3-unifrac-dbgsym_1.3-2_amd64.deb 79a9f9eb8b6b9479bcc85a39aecf3f42 206000 python optional python3-unifrac_1.3-2_amd64.deb 583388eaa4e799b2c5652a489ae76b8a 11127 science optional unifrac_1.3-2_amd64.buildinfo Wed May 8 18:05:17 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_24-20007.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/unifrac_1.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/unifrac_1.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/unifrac_1.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/b1/unifrac_1.3-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Sf0po7lG/b2/unifrac_1.3-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.393s) 0.393s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 752ms CPU time consumed: 751ms Wed May 8 18:05:19 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 18:05:19 UTC 2024 I: unifrac from trixie built successfully and reproducibly on amd64. Wed May 8 18:05:20 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 18:05:20 UTC 2024 I: Submitting 12K b1/unifrac_1.3-2_amd64.buildinfo.asc Wed May 8 18:05:23 UTC 2024 I: Submitting 12K b2/unifrac_1.3-2_amd64.buildinfo.asc Wed May 8 18:05:24 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 18:05:24 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 18:05:24 UTC 2024 I: Removing signed unifrac_1.3-2_amd64.buildinfo.asc files: removed './b1/unifrac_1.3-2_amd64.buildinfo.asc' removed './b2/unifrac_1.3-2_amd64.buildinfo.asc'