Tue Oct 29 14:29:29 UTC 2024 I: starting to build toppic/trixie/amd64 on jenkins on '2024-10-29 14:29' Tue Oct 29 14:29:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/24883/console.log Tue Oct 29 14:29:29 UTC 2024 I: Downloading source for trixie/toppic=1.5.3+dfsg1-1 --2024-10-29 14:29:30-- http://deb.debian.org/debian/pool/main/t/toppic/toppic_1.5.3%2bdfsg1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2461 (2.4K) [text/prs.lines.tag] Saving to: ‘toppic_1.5.3+dfsg1-1.dsc’ 0K .. 100% 294M=0s 2024-10-29 14:29:30 (294 MB/s) - ‘toppic_1.5.3+dfsg1-1.dsc’ saved [2461/2461] Tue Oct 29 14:29:30 UTC 2024 I: toppic_1.5.3+dfsg1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: toppic Binary: toppic, toppic-common Architecture: any all Version: 1.5.3+dfsg1-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/toppic Vcs-Git: https://salsa.debian.org/debichem-team/toppic.git Build-Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Package-List: toppic deb science optional arch=any toppic-common deb science optional arch=all Checksums-Sha1: 0308e54adcd49c048ce1d88530a9d4c386582708 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 9633089f87294800c4b7edbd1403939d9c68e0b7 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz Checksums-Sha256: 74e305fc0ee99c6b268b042587adaca1f775c4e7c87249692dbee3e44c564ae7 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 428184b36184f9203a267b380d2b65ca73f942f8aaca10135f6bc387b2dfcaf9 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz Files: 0f1e142722fc75a2d52deed09297da51 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 6209f6ac0c7d59008a28aed31d2c00a9 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmNe/+YACgkQQatITXaU z0IsxQ/+NpEw0rbSlseEk6JAHc2MYz8LQLOLpZvCuf6tZB0Bh8xB5uWtsiW73DrH lpdCvLM6Q5cRzX/5nCKDa9F2fYrLEany9RBsWv2qa7brTu9JqIxiKb5XzuTmVo2x Ga4p5YCpCB2YbUomK5FeBXlsC7Y6ak7ljMBBxM0xSPtD5wTloxu1xrCHK9KStl9J u8q+ZznLbmvYeGoqRIuuXADC3JP6+wXJblHmqD9aaaVLp7FQj18zBXLZBPfs9pgA rDb8lkzkVXMBpBI8RAER/aFcuLeSP0bOmE7bRAOO4XSYN6TtW4DbzwpmkIVHBcJL xvJaVxhL/FPM9iRfr+4HE41jVmfnUdTkguH6dOhsNCfW1ejRqDkC7SrfpyAC8uJV 0czzV1a86tntOSxOLl9S8alLXbgjcJh4c42g4vaBFWsRFmfHlTKhSDXFQn9sJIRf DI/tSFk1Z7d3JHKH4FeaW0jYnTa16/Tx3gwfYl1TbtgWnZNHD+OX5cog9S0qOUS4 f5WxlALf8+tSqU6BzyP55+ftW3BcbR2IOVgSWJsdTIJGulfnteo1qGPp/K8r8eTH If8TdOZ+nUd6co5NM0NiIJ8+hzTCW/LIv7wDS6usq6dIl+G8Zn9iJtA4l6zyfN4/ WZ4DDxqq5c6W0ncjPEZ0eCEs4IFte12NITxIKmh8Sr+z4CkHhcQ= =hpRl -----END PGP SIGNATURE----- Tue Oct 29 14:29:30 UTC 2024 I: Checking whether the package is not for us Tue Oct 29 14:29:30 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Oct 29 14:29:30 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Oct 29 14:40:03 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 1 08:52:29 -12 2025 I: pbuilder-time-stamp: 1764622349 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [toppic_1.5.3+dfsg1-1.dsc] I: copying [./toppic_1.5.3+dfsg1.orig.tar.gz] I: copying [./toppic_1.5.3+dfsg1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 30 22:51:18 2022 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./toppic_1.5.3+dfsg1-1.dsc: no acceptable signature found dpkg-source: info: extracting toppic in toppic-1.5.3+dfsg1 dpkg-source: info: unpacking toppic_1.5.3+dfsg1.orig.tar.gz dpkg-source: info: unpacking toppic_1.5.3+dfsg1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-CMake-build-system-to-configure-the-DATADIR.patch dpkg-source: info: applying 0002-Fix-the-erroneous-bin-install-directory.patch dpkg-source: info: applying 0003-Ensure-the-GUI-variants-are-installed-and-shipped.patch dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1499799/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7fd6a387bde94efcab7eb3161294054e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1499799' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/pbuilderrc_JEgJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1499799/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libxerces-c-dev; however: Package libxerces-c-dev is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on libpwizlite-dev; however: Package libpwizlite-dev is not installed. pbuilder-satisfydepends-dummy depends on nlohmann-json3-dev; however: Package nlohmann-json3-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on libjs-filesaver; however: Package libjs-filesaver is not installed. pbuilder-satisfydepends-dummy depends on fonts-font-awesome; however: Package fonts-font-awesome is not installed. pbuilder-satisfydepends-dummy depends on fonts-freefont-ttf; however: Package fonts-freefont-ttf is not installed. pbuilder-satisfydepends-dummy depends on libjs-bootstrap4; however: Package libjs-bootstrap4 is not installed. pbuilder-satisfydepends-dummy depends on libjs-popper.js; however: Package libjs-popper.js is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-ui; however: Package libjs-jquery-ui is not installed. pbuilder-satisfydepends-dummy depends on node-jquery; however: Package node-jquery is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-freefont-ttf{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libinput-bin{a} libinput10{a} libjpeg62-turbo{a} libjs-bootstrap4{a} libjs-filesaver{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-popper.js{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm19{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libopengl-dev{a} libopengl0{a} libp11-kit-dev{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpwizlite-dev{a} libpwizlite3t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} nlohmann-json3-dev{a} node-jquery{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.12{a} python3.12-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} tzdata{a} x11-common{a} x11proto-dev{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus krb5-locales libarchive-cpio-perl libglib2.0-data libjs-sizzle libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libqt5opengl5-dev libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-pil python3-pygments qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 275 newly installed, 0 to remove and 0 not upgraded. Need to get 172 MB of archives. After unpacking 889 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1 [349 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5 [207 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 83 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2 [234 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2 [235 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2 [240 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2 [245 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 94 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2 [333 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2 [372 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2 [239 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 99 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2 [281 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2 [231 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2 [297 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 104 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2 [329 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5 [10.4 MB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2 [346 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2 [261 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 109 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2 [347 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2 [375 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 113 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2 [269 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2 [276 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 116 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b4 [313 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.10-2 [251 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.6-2 [439 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2 [439 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2 [123 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-2 [208 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.19.0-3+b2 [98.0 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1 [1316 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.6-2 [1381 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.63.0-1 [115 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.4.0-1 [86.5 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.6.0-1 [23.8 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libngtcp2-dev amd64 1.6.0-1 [170 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1 [77.4 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b4 [67.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.3.2-1 [2742 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.10.1-2 [471 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 151 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.0-1 [34.0 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.2.4-1 [37.9 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.2-1 [26.0 MB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 177 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.2.4-1 [9182 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.2.4-1 [42.7 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.0-1 [26.4 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libegl-mesa0 amd64 24.2.4-1 [133 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libegl1 amd64 1.7.0-1+b1 [34.3 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.2.4-1 [43.8 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.2.4-1 [154 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libglx-dev amd64 1.7.0-1+b1 [15.8 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libgl-dev amd64 1.7.0-1+b1 [101 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libegl-dev amd64 1.7.0-1+b1 [19.5 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.1-1 [1499 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libopengl0 amd64 1.7.0-1+b1 [31.1 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa amd64 9.0.2-1.1+b1 [180 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libopengl-dev amd64 1.7.0-1+b1 [5380 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b1 [219 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libgudev-1.0-0 amd64 238-5 [14.4 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 214 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4 [130 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1 [315 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.20+ds-1 [1684 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libwacom-common all 2.13.0-1 [98.0 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libwacom9 amd64 2.13.0-1 [24.0 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libinput-bin amd64 1.26.2-1 [25.3 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [22.2 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libinput10 amd64 1.26.2-1 [131 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libjs-filesaver all 2.0.4+dfsg+~2.0.5-2 [9776 B] Get: 231 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libpwizlite3t64 amd64 3.0.8-1 [874 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libpwizlite-dev amd64 3.0.8-1 [1232 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libqt5core5t64 amd64 5.15.13+dfsg-4 [1868 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libqt5concurrent5t64 amd64 5.15.13+dfsg-4 [44.0 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libqt5dbus5t64 amd64 5.15.13+dfsg-4 [216 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libqt5network5t64 amd64 5.15.13+dfsg-4 [680 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libxcb-util1 amd64 0.4.0-1+b2 [22.5 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b3 [15.7 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libxcb-render-util0 amd64 0.3.9-1+b2 [17.4 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.17.0-2 [105 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [105 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libxcb-xinput0 amd64 1.17.0-2 [130 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libxcb-xkb1 amd64 1.17.0-2 [129 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b1 [16.2 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libqt5gui5t64 amd64 5.15.13+dfsg-4 [3495 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 libqt5widgets5t64 amd64 5.15.13+dfsg-4 [2397 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libqt5printsupport5t64 amd64 5.15.13+dfsg-4 [204 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libqt5sql5t64 amd64 5.15.13+dfsg-4 [124 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libqt5test5t64 amd64 5.15.13+dfsg-4 [150 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libqt5xml5t64 amd64 5.15.13+dfsg-4 [125 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libvulkan-dev amd64 1.3.296.0-1 [1397 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [886 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libxerces-c-dev amd64 3.2.4+debian-1.3 [1696 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libxext-dev amd64 2:1.3.4-1+b2 [104 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 nlohmann-json3-dev all 3.11.3-1 [261 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 node-jquery all 3.6.1+dfsg+~3.5.14-1 [160 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 qt5-qmake-bin amd64 5.15.13+dfsg-4 [1065 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 qt5-qmake amd64 5.15.13+dfsg-4 [223 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 qtbase5-dev-tools amd64 5.15.13+dfsg-4 [775 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 qtbase5-dev amd64 5.15.13+dfsg-4 [1122 kB] Fetched 172 MB in 2s (103 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20267 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21339 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... 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Setting up libdrm-common (2.4.123-1) ... Setting up libevdev2:amd64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b4) ... Setting up libgudev-1.0-0:amd64 (238-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up qtchooser (66-2) ... Setting up libp11-kit-dev:amd64 (0.25.5-2) ... Setting up node-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libwacom-common (2.13.0-1) ... Setting up libxkbcommon0:amd64 (1.6.0-1+b1) ... Setting up libwayland-client0:amd64 (1.23.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... Setting up libllvm19:amd64 (1:19.1.2-1) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2) ... Setting up qt5-qmake:amd64 (5.15.13+dfsg-4) ... Setting up nettle-dev:amd64 (3.10-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libwacom9:amd64 (2.13.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.6.0-1) ... 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Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.10.1-2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libxerces-c3.2t64:amd64 (3.2.4+debian-1.3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libqt5core5t64:amd64 (5.15.13+dfsg-4) ... Setting up libxerces-c-dev:amd64 (3.2.4+debian-1.3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libqt5sql5t64:amd64 (5.15.13+dfsg-4) ... Setting up cmake (3.30.5-1) ... Setting up libhts3t64:amd64 (1.20+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libcups2t64:amd64 (2.4.10-2) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up mesa-libgallium:amd64 (24.2.4-1) ... Setting up libqt5dbus5t64:amd64 (5.15.13+dfsg-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up libgbm1:amd64 (24.2.4-1) ... Setting up libqt5concurrent5t64:amd64 (5.15.13+dfsg-4) ... Setting up python3.12 (3.12.6-1) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libgl1-mesa-dri:amd64 (24.2.4-1) ... Setting up libqt5network5t64:amd64 (5.15.13+dfsg-4) ... Setting up libqt5xml5t64:amd64 (5.15.13+dfsg-4) ... Setting up debhelper (13.20) ... Setting up libqt5test5t64:amd64 (5.15.13+dfsg-4) ... Setting up libcurl4-gnutls-dev:amd64 (8.10.1-2) ... Setting up qtbase5-dev-tools (5.15.13+dfsg-4) ... Setting up libegl-mesa0:amd64 (24.2.4-1) ... Setting up libpwizlite3t64:amd64 (3.0.8-1) ... Setting up libegl1:amd64 (1.7.0-1+b1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up libglx-mesa0:amd64 (24.2.4-1) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libhts-dev:amd64 (1.20+ds-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-roman (4.2-1) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up libpwizlite-dev:amd64 (3.0.8-1) ... Setting up libglx-dev:amd64 (1.7.0-1+b1) ... Setting up libgl-dev:amd64 (1.7.0-1+b1) ... Setting up libvulkan-dev:amd64 (1.3.296.0-1) ... Setting up libegl-dev:amd64 (1.7.0-1+b1) ... Setting up libqt5gui5t64:amd64 (5.15.13+dfsg-4) ... Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b1) ... Setting up libqt5widgets5t64:amd64 (5.15.13+dfsg-4) ... Setting up libqt5printsupport5t64:amd64 (5.15.13+dfsg-4) ... Setting up qtbase5-dev:amd64 (5.15.13+dfsg-4) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1' rm -f debian/topfd.1 rm -f debian/toppic.1 rm -f debian/topmg.1 rm -f debian/topdiff.1 dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1' rst2man debian/topfd.1.rst > debian/topfd.1 rst2man debian/toppic.1.rst > debian/toppic.1 rst2man debian/topmg.1.rst > debian/topmg.1 rst2man debian/topdiff.1.rst > debian/topdiff.1 dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_BUILD_TYPE=release .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- system name Linux -- PwizLite_INCLUDE_DIRS: /usr/include/pwizlite -- PwizLite_LIBRARIES: /usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") The PkgConfig package was found. -- Checking for one of the modules 'htslib;libhts;hts' -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -- Configuring done (0.6s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory 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/build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 0%] Built target topindex_autogen_timestamp_deps [ 0%] Built target topfd_autogen_timestamp_deps [ 0%] Built target topfd_gui_autogen_timestamp_deps make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend [ 0%] Built target topindex_gui_autogen_timestamp_deps [ 0%] Built target toppic_gui_autogen_timestamp_deps make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend [ 0%] Built target topmg_gui_autogen_timestamp_deps [ 0%] Built target topdiff_gui_autogen_timestamp_deps [ 0%] Built target topmerge_autogen_timestamp_deps [ 0%] Built target toppic_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend [ 0%] Built target topmg_autogen_timestamp_deps [ 0%] Built target topdiff_autogen_timestamp_deps make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" [ 0%] Built target topmerge_gui_autogen_timestamp_deps make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend [ 0%] Built target topconvert_autogen_timestamp_deps make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 0%] Automatic MOC and UIC for target topindex [ 0%] Automatic MOC and UIC for target topindex_gui [ 0%] Automatic MOC and UIC for target topfd [ 0%] Automatic MOC and UIC for target topfd_gui [ 1%] Automatic MOC and UIC for target topmg_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target toppic_gui [ 1%] Automatic MOC and UIC for target topdiff_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target topmerge /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target topmerge_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target topconvert /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/console/topindex.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/console/topfd.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/console/topmerge.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: 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"SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: 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"SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_autogen/deps" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: 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AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/deps" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: 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"SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/console/topconvert.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_autogen/deps" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/timestamp AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/timestamp AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/timestamp /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 1%] Built target topindex_autogen make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend [ 1%] Built target topmerge_autogen [ 1%] Built target topfd_autogen make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend [ 1%] Built target topconvert_autogen make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topfd.dir/build.make 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&& /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert.dir/DependInfo.cmake "--color=" Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target topindex Dependencies file "topfd_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd.dir/compiler_depend.internal". make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Dependencies file "topmerge_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Dependencies file "topconvert_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert.dir/compiler_depend.internal". make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/build Consolidate compiler generated dependencies of target topfd make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build Consolidate compiler generated dependencies of target topmerge Consolidate compiler generated dependencies of target topconvert make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge.dir/build.make CMakeFiles/topmerge.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topconvert.dir/build.make CMakeFiles/topconvert.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 1%] Automatic MOC and UIC for target topdiff [ 1%] Automatic MOC and UIC for target toppic [ 1%] Automatic MOC and UIC for target topmg make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o [ 1%] Building CXX object CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_argument.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include 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-I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.30/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/toppic.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: 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AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: 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"SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: 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"SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp.cpp AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: 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"SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topdiff.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" [ 2%] Building CXX object CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/toppic_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/toppic_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing 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"SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert.cpp AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: 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"SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/deps" [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/timestamp AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmg_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmg_autogen/deps" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/timestamp AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" [ 2%] Built target toppic_autogen [ 2%] Built target topdiff_autogen [ 2%] Built target topmg_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/deps" [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_a.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue.cpp.o [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_b.cpp /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 2%] Built target topfd_gui_autogen /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex.cpp.o [ 2%] Built target topmerge_gui_autogen /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/vertex.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/vertex.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/vertex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.cpp [ 2%] Built target topdiff_gui_autogen [ 2%] Built target topindex_gui_autogen [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_a.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include 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CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp [ 2%] Building CXX object CMakeFiles/topconvert.dir/src/console/toppic_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" [ 3%] Building CXX object 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CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" [ 3%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 3%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend [ 3%] Built target toppic_gui_autogen make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic.dir/DependInfo.cmake "--color=" [ 3%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp Dependencies file "toppic_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic.dir/compiler_depend.internal". [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp Consolidate compiler generated dependencies of target toppic make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/build [ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/timestamp [ 3%] Building CXX object CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/mocs_compilation.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 3%] Built target topmg_gui_autogen [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic.cpp [ 3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp [ 3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp [ 3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/depend [ 3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg.dir/DependInfo.cmake "--color=" [ 3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o -c 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Consolidate compiler generated dependencies of target topmg make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 3%] Building CXX object CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/mocs_compilation.cpp [ 3%] Automatic RCC for src/gui/topmg/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutoRcc_icon_OBJ2MOUSMQ_Info.json release make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Dependencies file "topdiff_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff.dir/compiler_depend.internal". [ 3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/icon.qrc /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg.cpp Consolidate compiler generated dependencies of target topdiff make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/build AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutoRcc_icon_OBJ2MOUSMQ_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui.dir/DependInfo.cmake "--color=" [ 3%] Automatic RCC for src/gui/topdiff/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Info.json release make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Dependencies file "topmg_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topmg_gui AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc [ 3%] Building CXX object CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/build /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/mocs_compilation.cpp AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' Dependencies file "topdiff_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topdiff_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 3%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o [ 3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp [ 3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp [ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_process.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : | ^ /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' [ 3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp [ 3%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_process.cpp [ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/detail/error_code.hpp:14, from /usr/include/boost/system/errc.hpp:14, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/thread_data.hpp:10, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp [ 4%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp [ 4%] Building CXX object CMakeFiles/topmg.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 4%] Building CXX object CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp [ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 4%] Building CXX object CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 4%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 4%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 5%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, from /usr/include/boost/typeof/typeof.hpp:16, from /usr/include/boost/numeric/ublas/traits.hpp:29, from /usr/include/boost/numeric/ublas/storage.hpp:27, from /usr/include/boost/numeric/ublas/vector.hpp:21, from /usr/include/boost/numeric/ublas/matrix.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o [ 5%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 5%] Automatic RCC for src/gui/topmerge/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutoRcc_icon_FNASZ5VCWY_Info.json release [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod.cpp.o AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/icon.qrc /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutoRcc_icon_FNASZ5VCWY_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui.dir/DependInfo.cmake "--color=" Dependencies file "topmerge_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topmerge_gui [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod_base.cpp.o make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 5%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/threadtopmerge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 5%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 5%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/mod.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 5%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/util/logger.cpp.o [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 6%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:18: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 6%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 6%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.cpp [ 10%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include 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CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_argument.cpp [ 10%] Building CXX object CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp [ 10%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:19: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 13%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 13%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 14%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/toppic.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/toppic.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp [ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 15%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 15%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp [ 17%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp [ 17%] Building CXX object CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 17%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 17%] Building CXX object CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 17%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp [ 17%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp [ 17%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 17%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 19%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 19%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 19%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 19%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 19%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 19%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp [ 19%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp [ 19%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 19%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 19%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 19%] Building CXX object 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 20%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 20%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o [ 20%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 20%] Building CXX object CMakeFiles/topindex.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 20%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp [ 20%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 20%] Building CXX object CMakeFiles/topmg.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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[ 24%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 24%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp [ 24%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp [ 24%] Building CXX object CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp [ 24%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp [ 24%] Building CXX object CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 24%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 24%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp [ 24%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 24%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/mem_check.cpp.o [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o [ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 24%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 25%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 26%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp [ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 26%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 26%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 26%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 26%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 26%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 26%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 26%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o 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-o CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 26%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 26%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 26%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 28%] Building CXX object CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 28%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 28%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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Building CXX object CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 29%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 29%] Building CXX object CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 29%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 29%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 33%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 33%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp [ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 33%] Built target topindex [ 33%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 33%] Building CXX object CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 34%] Automatic RCC for src/gui/topfd/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release [ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/icon.qrc AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/DependInfo.cmake "--color=" Dependencies file "topfd_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topfd_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/build [ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp [ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 34%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp [ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 34%] Building CXX object CMakeFiles/topfd.dir/src/para/sp_para.cpp.o [ 34%] Automatic RCC for src/gui/topindex/icon.qrc /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutoRcc_icon_PJRF6ORA5X_Info.json release AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/icon.qrc [ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutoRcc_icon_PJRF6ORA5X_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui.dir/DependInfo.cmake "--color=" Dependencies file "topindex_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui.dir/compiler_depend.internal". [ 34%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp Consolidate compiler generated dependencies of target topindex_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/build make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 35%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp [ 35%] Automatic RCC for src/gui/toppic/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutoRcc_icon_23BTPJIYMA_Info.json release AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/icon.qrc AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutoRcc_icon_23BTPJIYMA_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui.dir/DependInfo.cmake "--color=" Dependencies file "toppic_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui.dir/compiler_depend.internal". [ 35%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp Consolidate compiler generated dependencies of target toppic_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 35%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp [ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 35%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o [ 35%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp [ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.cpp [ 35%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.cpp [ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 36%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 36%] Building CXX object 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CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 36%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 36%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 36%] Building CXX object CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:19: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/detail/error_code.hpp:14, from /usr/include/boost/system/errc.hpp:14, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/thread_data.hpp:10, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 36%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o [ 36%] Building CXX object CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 36%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o [ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:18: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/error_category.hpp:10, from /usr/include/boost/filesystem/detail/path_traits.hpp:25, from /usr/include/boost/filesystem/path.hpp:21, from /usr/include/boost/filesystem.hpp:16, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o [ 36%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_b.cpp [ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 37%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 38%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 39%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/envcnn/env_cnn.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp [ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 39%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp [ 40%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 40%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 40%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 40%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include 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CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp [ 40%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp [ 42%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 42%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : | ^ /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' [ 42%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 42%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 43%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 43%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 44%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 44%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 44%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 44%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp [ 44%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp [ 44%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 44%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 44%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 44%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, from /usr/include/boost/typeof/typeof.hpp:16, from /usr/include/boost/numeric/ublas/traits.hpp:29, from /usr/include/boost/numeric/ublas/storage.hpp:27, from /usr/include/boost/numeric/ublas/vector.hpp:21, from /usr/include/boost/numeric/ublas/matrix.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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-O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 44%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 44%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp [ 44%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 44%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 44%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 44%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 44%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 44%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 44%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 44%] Building CXX object 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CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 45%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 45%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 45%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 45%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 45%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 45%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp [ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 45%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 45%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 45%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp [ 45%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 46%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 46%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 46%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 46%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 46%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 48%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 50%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 50%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 51%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 51%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 52%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp [ 52%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp [ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 52%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 52%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 52%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 52%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 52%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 52%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp [ 52%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 53%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp [ 54%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 57%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include 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CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 58%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 63%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 63%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp [ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 63%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 63%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 64%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 64%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o [ 64%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 64%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 64%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp [ 64%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp [ 64%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o [ 64%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 64%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp [ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o [ 64%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 66%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 66%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp [ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include 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CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 67%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 67%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 67%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp [ 67%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp [ 67%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp [ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp [ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp [ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 69%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o [ 69%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 69%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp [ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 70%] Built target topfd [ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 72%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp [ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 73%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp [ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include 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Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 73%] Linking CXX executable /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topindex_gui /usr/bin/cmake -E cmake_link_script CMakeFiles/topindex_gui.dir/link.txt --verbose=1 [ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp /usr/bin/c++ -g -O2 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CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteofo[ 73%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp rm_factory.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topindex_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_serialization -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp [ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp [ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp [ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 79%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 79%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 79%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 79%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 79%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ 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CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topconvert -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread /usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz -lhts [ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp [ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include 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CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp [ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp [ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 82%] Built target topdiff_gui [ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp [ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o /usr/bin/c++ 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp [ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include 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CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 86%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 86%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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87%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp [ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 88%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp [ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 89%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp [ 89%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp [ 89%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp [ 89%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp [ 89%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp [ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp [ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 89%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 89%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o /usr/bin/c++ 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp [ 90%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp [ 91%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp [ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp [ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp [ 91%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [ 91%] Building CXX object 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CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp [ 91%] Built target topmerge [ 91%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp [ 92%] Built target topmerge_gui [ 92%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp [ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 92%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp [ 92%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp [ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 92%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o [ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o [ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp [ 95%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o [ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp [ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp [ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp [ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp [ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp [ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp [ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include 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CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp [100%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o [100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/toppic_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [100%] Built target toppic_gui make[2]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/css/bootstrap.min.css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js.map -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js.map -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/README.md -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/Readme.md -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/package.json -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/License.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.min.css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.min.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules.sh -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/package-lock.json -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/README.md -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/index.html -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm1.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm2.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm2.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm0.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm1.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm0.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm1.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm2.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm0.txt make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin cp --reflink=auto -a ./debian/tmp/usr/bin/topconvert ./debian/tmp/usr/bin/topdiff ./debian/tmp/usr/bin/topdiff_gui ./debian/tmp/usr/bin/topfd ./debian/tmp/usr/bin/topfd_gui ./debian/tmp/usr/bin/topindex ./debian/tmp/usr/bin/topindex_gui ./debian/tmp/usr/bin/topmerge ./debian/tmp/usr/bin/topmerge_gui ./debian/tmp/usr/bin/topmg ./debian/tmp/usr/bin/topmg_gui ./debian/tmp/usr/bin/toppic ./debian/tmp/usr/bin/toppic_gui debian/toppic/usr/bin/ install -m0755 -d debian/toppic-common//usr/share cp --reflink=auto -a debian/tmp/usr/share/toppic debian/toppic-common//usr/share/ install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common/ cp --reflink=auto -a ./doc/images ./doc/linux_build.md ./doc/msconvert_linux.md ./doc/records_of_the_gui.md ./doc/topfd_manual.md ./doc/topmg_manual.md ./doc/toppic_manual.md ./doc/tutorial.md ./doc/windows_build.md ./releases/example_files debian/toppic-common/usr/share/doc/toppic-common// install -m0755 -d debian/toppic-common/usr/share/toppic/local-source-copies/ cp --reflink=auto -a ./debian/local-source-copies/datatables.min.css ./debian/local-source-copies/datatables.min.js debian/toppic-common/usr/share/toppic/local-source-copies// dh_installdocs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/README.Debian debian/toppic/usr/share/doc/toppic/README.Debian install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/toppic.1 debian/toppic/usr/share/man/man1/toppic.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topdiff_gui.1.gz ln -s topdiff.1.gz debian/toppic/usr/share/man/man1/topdiff_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topmg_gui.1.gz ln -s topmg.1.gz debian/toppic/usr/share/man/man1/topmg_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/toppic_gui.1.gz ln -s toppic.1.gz debian/toppic/usr/share/man/man1/toppic_gui.1.gz install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/css rm -f debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf ln -s ../../../../fonts/truetype/freefont/FreeMono.ttf debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js ln -s ../../../../nodejs/popper.js/dist/popper.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js ln -s ../../../../nodejs/jquery/dist/jquery.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js ln -s ../../../../javascript/jquery-ui/jquery-ui.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/js/prsm rm -f debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/download rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/inspect/js/download rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js ln -s ../../../../../nodejs/bootstrap/dist/js/bootstrap.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js dh_strip_nondeterminism -O--buildsystem=cmake Using 1667166702 as canonical time Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic cd debian/toppic-common chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md cd '/build/reproducible-path/toppic-1.5.3+dfsg1' cd '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_fixperms -O--buildsystem=cmake find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug -- debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/toppic_gui objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug dh_strip -a -O--buildsystem=cmake install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fe/817c46ad98ecf17e7576a40c7a0fec843f2e14.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fe/817c46ad98ecf17e7576a40c7a0fec843f2e14.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fe/817c46ad98ecf17e7576a40c7a0fec843f2e14.debug debian/toppic/usr/bin/topmerge install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8d/6b333c0e8f4a5688f81b0b5ffec098e5c5230b.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8d/6b333c0e8f4a5688f81b0b5ffec098e5c5230b.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8d/6b333c0e8f4a5688f81b0b5ffec098e5c5230b.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8e/6f02629594ba499c08d6e561d1595fc429a96c.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8e/6f02629594ba499c08d6e561d1595fc429a96c.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/8e/6f02629594ba499c08d6e561d1595fc429a96c.debug debian/toppic/usr/bin/topindex install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d9/911beefef8d4573f638d9fbd1769f6430d9165.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d9/911beefef8d4573f638d9fbd1769f6430d9165.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d9/911beefef8d4573f638d9fbd1769f6430d9165.debug debian/toppic/usr/bin/topmg install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/45 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/45/1d1fe386ba2605288ea7d082f1fca4c82ed7a5.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/45/1d1fe386ba2605288ea7d082f1fca4c82ed7a5.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/45/1d1fe386ba2605288ea7d082f1fca4c82ed7a5.debug debian/toppic/usr/bin/topdiff_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4d/5766831f5609957dc277366bf7de504d17f7d7.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4d/5766831f5609957dc277366bf7de504d17f7d7.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4d/5766831f5609957dc277366bf7de504d17f7d7.debug debian/toppic/usr/bin/topfd install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba/c64109edeb4a91268786df99ad881b3aa04faf.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba/c64109edeb4a91268786df99ad881b3aa04faf.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba/c64109edeb4a91268786df99ad881b3aa04faf.debug debian/toppic/usr/bin/topdiff install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/e4f447c3c806f3687afedaa2417dc7a882ca3c.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/e4f447c3c806f3687afedaa2417dc7a882ca3c.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/e4f447c3c806f3687afedaa2417dc7a882ca3c.debug debian/toppic/usr/bin/toppic_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/33db120c223e33abf7e26261d5dbecc63aacf1.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/33db120c223e33abf7e26261d5dbecc63aacf1.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ac/33db120c223e33abf7e26261d5dbecc63aacf1.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6b/614b59925d9862c0447b4caf213d44d51a3554.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6b/614b59925d9862c0447b4caf213d44d51a3554.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6b/614b59925d9862c0447b4caf213d44d51a3554.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/4f06b70e722c61614437c88cd7503ac6247126.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/4f06b70e722c61614437c88cd7503ac6247126.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/4f06b70e722c61614437c88cd7503ac6247126.debug debian/toppic/usr/bin/topmg_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/9875bbebb2090a39eb5fa8c2f8033c7cc16c62.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/9875bbebb2090a39eb5fa8c2f8033c7cc16c62.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/9875bbebb2090a39eb5fa8c2f8033c7cc16c62.debug debian/toppic/usr/bin/topindex_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/60/a4059bc11f3dbb90d34a510e14fbce059b8f2e.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/60/a4059bc11f3dbb90d34a510e14fbce059b8f2e.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/60/a4059bc11f3dbb90d34a510e14fbce059b8f2e.debug debian/toppic/usr/bin/topmerge_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/toppic/usr/lib/debug install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/share/doc ln -s toppic debian/.debhelper/toppic/dbgsym-root/usr/share/doc/toppic-dbgsym install -m0755 -d debian/.debhelper/toppic dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge_gui dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake install -m0755 -d debian/toppic-common/DEBIAN echo misc:Depends= >> debian/toppic-common.substvars echo misc:Pre-Depends= >> debian/toppic-common.substvars dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=451d1fe386ba2605288ea7d082f1fca4c82ed7a5 4d5766831f5609957dc277366bf7de504d17f7d7 539875bbebb2090a39eb5fa8c2f8033c7cc16c62 60a4059bc11f3dbb90d34a510e14fbce059b8f2e 6b614b59925d9862c0447b4caf213d44d51a3554 8d6b333c0e8f4a5688f81b0b5ffec098e5c5230b 8e6f02629594ba499c08d6e561d1595fc429a96c ac33db120c223e33abf7e26261d5dbecc63aacf1 ace4f447c3c806f3687afedaa2417dc7a882ca3c bac64109edeb4a91268786df99ad881b3aa04faf d9911beefef8d4573f638d9fbd1769f6430d9165 ec4f06b70e722c61614437c88cd7503ac6247126 fe817c46ad98ecf17e7576a40c7a0fec843f2e14" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic-common/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb --root-owner-group --build debian/toppic-common .. dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_amd64.deb'. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1499799 and its subdirectories I: Current time: Mon Dec 1 09:02:57 -12 2025 I: pbuilder-time-stamp: 1764622977 Tue Oct 29 14:40:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Oct 29 14:40:04 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Oct 29 14:56:49 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Oct 29 14:56:50 UTC 2024 I: toppic_1.5.3+dfsg1-1_amd64.changes: Format: 1.8 Date: Sun, 30 Oct 2022 22:51:42 +0100 Source: toppic Binary: toppic toppic-common toppic-dbgsym Architecture: all amd64 Version: 1.5.3+dfsg1-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: toppic - Top-down proteoform identification and characterization (programs toppic-common - Top-down proteoform identification and characterization (common d Changes: toppic (1.5.3+dfsg1-1) unstable; urgency=low . * Repackaged source tree to actually remove doc/wiki. * Fixes to license names and small designations (Boost, MIT). * Also ship example files in toppic-common doc. Checksums-Sha1: 0e7e9f793bc16c3a55658a28bb0d9c2ea5abcd98 18754620 toppic-common_1.5.3+dfsg1-1_all.deb 8c185fa4b6e77b4cdc1d0d4c31e3f38bd19921e5 198637176 toppic-dbgsym_1.5.3+dfsg1-1_amd64.deb 299245fc3d640d585f09c181821a0835eaa2377b 13414 toppic_1.5.3+dfsg1-1_amd64.buildinfo bedef02cb3a3efb3d170ce51b88e57422cfabd71 4925024 toppic_1.5.3+dfsg1-1_amd64.deb Checksums-Sha256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 18754620 toppic-common_1.5.3+dfsg1-1_all.deb 18d4c11f0e5cdccffa3c8b1316039c0aec8da1872e9a30e15dc940019f2b9868 198637176 toppic-dbgsym_1.5.3+dfsg1-1_amd64.deb 0f4f16eb5aa2318bf28131460ee75c7108cd06a34aac441d56dad9ce2e6fbc4c 13414 toppic_1.5.3+dfsg1-1_amd64.buildinfo 97e08f0e9515c978dc8a6e738061364aae45a2b81d382b973255054f82b7ad32 4925024 toppic_1.5.3+dfsg1-1_amd64.deb Files: 3295d191cf96b8e41749cb9c91950588 18754620 science optional toppic-common_1.5.3+dfsg1-1_all.deb 4afa03ca47d8f98aca100a9ff0bc55df 198637176 debug optional toppic-dbgsym_1.5.3+dfsg1-1_amd64.deb 4f8a8099858e06c246a34d061fe36d45 13414 science optional toppic_1.5.3+dfsg1-1_amd64.buildinfo fa596a93febbdcee8db108e1de0c8c25 4925024 science optional toppic_1.5.3+dfsg1-1_amd64.deb Tue Oct 29 14:56:52 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_6-24883.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/toppic_1.5.3+dfsg1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/toppic_1.5.3+dfsg1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/toppic_1.5.3+dfsg1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/b1/toppic_1.5.3+dfsg1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.9pOt3luJ/b2/toppic_1.5.3+dfsg1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.773s) 2.773s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 2.364s) 2.364s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3.150s CPU time consumed: 3.130s Tue Oct 29 14:56:56 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 29 14:56:56 UTC 2024 I: toppic from trixie built successfully and reproducibly on amd64. Tue Oct 29 14:56:57 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 29 14:56:57 UTC 2024 I: Submitting 16K b1/toppic_1.5.3+dfsg1-1_amd64.buildinfo.asc Tue Oct 29 14:56:58 UTC 2024 I: Submitting 16K b2/toppic_1.5.3+dfsg1-1_amd64.buildinfo.asc Tue Oct 29 14:56:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 29 14:56:59 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 29 14:56:59 UTC 2024 I: Removing signed toppic_1.5.3+dfsg1-1_amd64.buildinfo.asc files: removed './b1/toppic_1.5.3+dfsg1-1_amd64.buildinfo.asc' removed './b2/toppic_1.5.3+dfsg1-1_amd64.buildinfo.asc'