Fri Dec 6 06:45:21 UTC 2024 I: starting to build sweed/trixie/amd64 on jenkins on '2024-12-06 06:45' Fri Dec 6 06:45:21 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_36/39125/console.log Fri Dec 6 06:45:21 UTC 2024 I: Downloading source for trixie/sweed=3.2.1+dfsg-6 --2024-12-06 06:45:21-- http://deb.debian.org/debian/pool/main/s/sweed/sweed_3.2.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sweed_3.2.1+dfsg-6.dsc’ 0K . 100% 295M=0s 2024-12-06 06:45:21 (295 MB/s) - ‘sweed_3.2.1+dfsg-6.dsc’ saved [1978/1978] Fri Dec 6 06:45:21 UTC 2024 I: sweed_3.2.1+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sweed Binary: sweed Architecture: any Version: 3.2.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sweed Vcs-Git: https://salsa.debian.org/med-team/sweed.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: sweed deb science optional arch=any Checksums-Sha1: fb8c433ac9b860a66bcbd3beab1f7b89ddb902e8 62064 sweed_3.2.1+dfsg.orig.tar.xz 3066ecd83099f91b030ac43fc34e8366e89c6b0f 7784 sweed_3.2.1+dfsg-6.debian.tar.xz Checksums-Sha256: d93ca71debbb3d3c9b09aa9454ca594b25ab2e0eaaed156ade392cde5f00c2b3 62064 sweed_3.2.1+dfsg.orig.tar.xz 02c5cc5e65397ad548b515640ba240313991ec3ed79d82f0bb17c0b97c68b411 7784 sweed_3.2.1+dfsg-6.debian.tar.xz Files: abce23d90404a755920a28eef53b2a6b 62064 sweed_3.2.1+dfsg.orig.tar.xz 9eb0b6327fc0217029426425dc2c1ac8 7784 sweed_3.2.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdO3EcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH6rA//UUvgaS/9SmgZzyYqRcpdIyUoqhi5cC4z RPWveMlQy2g/yI5Hys9SiU+3AlBNV+uqFl9G0o3O2FAjj95l15t+VWfkoxstnPYK qQO3T6mEShDa2a0iX+LU+PxbaHPxlUbRWp5ykBFVxxZpYJpC7qeyEPl/t7AtnE5B 29JMQZmAscfnW77FJmIS+I8+BEk7aNe792sL3IIc7QmSom5Xq9ibMIGUOnyM2BKs 7f9RDvLtaTRVIPACOSwqb9SIFMgVjcAwy7KnCHEKaeCPMeSqVcIq63UXfLlwZDeC 0LXECpWt+gYCL5YHKV7Ow4+68hPP+333qsh/GTilYXahOT3jXcaknU2U+neTq5hN ZXyQ48GAkrTwVDcXFW6almRmT3ygteR8yvTVKaQENLqPHmuNZP13jHEZ0IRI7z4B z7onWmTQVoDBGjyTkJjKU5q85pq428ebZF4PvfMBxs5+wRcFquu0FjMHSgI3qkL0 2Lt0lcmUdF3A0ry9nFjboYwdYcfFt7T8Cle0nSmdCFHZDhhezwSE+6DoHt1Ej1oo dGHhaCun+exfopwz7sqEhJjsG+6o/2vr5TyOad8q8Awu8ZnnDk5yNa4jokyP6dVQ PM2/sdsLvJva2fWwif09Ysu24f6XVlmZDhFFMGfDLZ8o312wY/1i0GTYa+Kzp1E+ dOtbYmhcxkk= =u8sw -----END PGP SIGNATURE----- Fri Dec 6 06:45:21 UTC 2024 I: Checking whether the package is not for us Fri Dec 6 06:45:21 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Fri Dec 6 06:45:21 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Fri Dec 6 06:46:08 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 8 01:08:23 -12 2026 I: pbuilder-time-stamp: 1767877703 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sweed_3.2.1+dfsg-6.dsc] I: copying [./sweed_3.2.1+dfsg.orig.tar.xz] I: copying [./sweed_3.2.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 3 10:24:07 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting sweed in sweed-3.2.1+dfsg dpkg-source: info: unpacking sweed_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sweed_3.2.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying arm64.patch dpkg-source: info: applying integer_overflow.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3678427/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3678427' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/pbuilderrc_92Es --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/b1 --logfile b1/build.log sweed_3.2.1+dfsg-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' I: uname -a Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3678427/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 0s (70.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-6_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_clean rm -f *.o *~ SweeD make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_build --buildsystem=makefile -- -f Makefile.gcc make -j12 "INSTALL=install --strip-program=true" -f Makefile.gcc make[2]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD_Input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD_Kernel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD_SFS.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD_CLR.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -c SweeD_BFGS.c SweeD_Kernel.c: In function 'getAlpha': SweeD_Kernel.c:383:26: warning: 'lik' may be used uninitialized [-Wmaybe-uninitialized] 383 | *likelihood = lik[maxPos]; | ~~~^~~~~~~~ SweeD_Kernel.c:340:15: note: 'lik' declared here 340 | t_sfs lik[LOCALGRIDSIZE]; | ^~~ SweeD_Input.c: In function 'findFirstAlignment': SweeD_Input.c:1009:17: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 1009 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SweeD_Input.c: In function 'readLine_VCF': SweeD_Input.c:2672:41: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 2672 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -g -o SweeD SweeD.o SweeD_Input.o SweeD_Kernel.o SweeD_SFS.o SweeD_CLR.o SweeD_BFGS.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sweed/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-6_amd64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3678427 and its subdirectories I: Current time: Thu Jan 8 01:09:07 -12 2026 I: pbuilder-time-stamp: 1767877747 Fri Dec 6 06:46:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Fri Dec 6 06:46:09 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Fri Dec 6 06:46:45 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Fri Dec 6 06:46:45 UTC 2024 I: sweed_3.2.1+dfsg-6_amd64.changes: Format: 1.8 Date: Tue, 03 Dec 2024 09:28:04 +0100 Source: sweed Binary: sweed sweed-dbgsym Architecture: amd64 Version: 3.2.1+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: sweed - assessment of SNPs for their evolutionary advantage Closes: 1080069 Changes: sweed (3.2.1+dfsg-6) unstable; urgency=medium . * Team upload. * Catch potential integer overflow to buffer overflow Closes: #1080069 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 1c98a6915e1e5d684955ffa55e1bf254f354534c 114836 sweed-dbgsym_3.2.1+dfsg-6_amd64.deb 224159fb8be3070237bf90c0b924e487167ed93c 5040 sweed_3.2.1+dfsg-6_amd64.buildinfo 755e44468f358c42366b939daba109d7505cfd89 66204 sweed_3.2.1+dfsg-6_amd64.deb Checksums-Sha256: 4ac955a4b5358e52fb047ecb95942c3c612ba81e051125919db8b53b539d12c0 114836 sweed-dbgsym_3.2.1+dfsg-6_amd64.deb f5df46207cfb431a4ed53818ce2978d44e0dffdd4af6f8a96d7c5843e481e2db 5040 sweed_3.2.1+dfsg-6_amd64.buildinfo 1659b5e2d7b486663abb08f25993950e2d8861185d110944f41a2ec52cd135fa 66204 sweed_3.2.1+dfsg-6_amd64.deb Files: af11ed92bb5ce4fe5761a78bc8496773 114836 debug optional sweed-dbgsym_3.2.1+dfsg-6_amd64.deb 4e640691a80d4999772f0383a9b51b26 5040 science optional sweed_3.2.1+dfsg-6_amd64.buildinfo 133fced04a6ef8be8d6a30ed1dc0412e 66204 science optional sweed_3.2.1+dfsg-6_amd64.deb Fri Dec 6 06:46:46 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_36-39125.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/sweed_3.2.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/sweed_3.2.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/sweed_3.2.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/b1/sweed_3.2.1+dfsg-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zLAOjwDk/b2/sweed_3.2.1+dfsg-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.347s) 0.347s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 672ms CPU time consumed: 669ms Fri Dec 6 06:46:47 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 6 06:46:47 UTC 2024 I: sweed from trixie built successfully and reproducibly on amd64. Fri Dec 6 06:46:48 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Dec 6 06:46:48 UTC 2024 I: Submitting 8.0K b1/sweed_3.2.1+dfsg-6_amd64.buildinfo.asc Fri Dec 6 06:46:49 UTC 2024 I: Submitting 8.0K b2/sweed_3.2.1+dfsg-6_amd64.buildinfo.asc Fri Dec 6 06:46:50 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 6 06:46:50 UTC 2024 I: Done submitting .buildinfo files. Fri Dec 6 06:46:50 UTC 2024 I: Removing signed sweed_3.2.1+dfsg-6_amd64.buildinfo.asc files: removed './b1/sweed_3.2.1+dfsg-6_amd64.buildinfo.asc' removed './b2/sweed_3.2.1+dfsg-6_amd64.buildinfo.asc'