Wed Oct 30 12:23:17 UTC 2024 I: starting to build spoa/trixie/amd64 on jenkins on '2024-10-30 12:23' Wed Oct 30 12:23:17 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/21833/console.log Wed Oct 30 12:23:17 UTC 2024 I: Downloading source for trixie/spoa=4.1.4-2 --2024-10-30 12:23:18-- http://deb.debian.org/debian/pool/main/s/spoa/spoa_4.1.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2306 (2.3K) [text/prs.lines.tag] Saving to: ‘spoa_4.1.4-2.dsc’ 0K .. 100% 314M=0s 2024-10-30 12:23:18 (314 MB/s) - ‘spoa_4.1.4-2.dsc’ saved [2306/2306] Wed Oct 30 12:23:18 UTC 2024 I: spoa_4.1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa7.0.0, libspoa-dev Architecture: any Version: 4.1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/rvaser/spoa Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386] Package-List: libspoa-dev deb libdevel optional arch=any libspoa7.0.0 deb libs optional arch=any spoa deb science optional arch=any Checksums-Sha1: 4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz b6b267b927d061faad721546907cfc2fe5f8de17 8916 spoa_4.1.4-2.debian.tar.xz Checksums-Sha256: ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz 4829ccc110a3b45b65ec89bf781d0b872a3b3e7d05dd0ea6f83138ea9c8b96fe 8916 spoa_4.1.4-2.debian.tar.xz Files: b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz 4b1c264b2541ae76ad230cedf82d1dbc 8916 spoa_4.1.4-2.debian.tar.xz Dgit: 42af53d79785430a8d68c815f2e48d8786ebc476 debian archive/debian/4.1.4-2 https://git.dgit.debian.org/spoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahXg8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpt0BAAqboi+lvHXH3U2zN6ek60fTDEorTx anmKlDgzk57ZTv+7woccGHJ+43o5q27k7AYLjKiAESK4wWIt3p8z0Vc/B2sKeN/A qKyIyZ8fkfH9CZVQzzZH7BFqRl4SYTBiaoXcatvUYKiu6/nE62NE+EvR2pJUP7I2 UsjVW7I1sJyrZgnYrA30KjMo6y4W70l+CP4oVRJwd2D7HCyNXCXG8o4nl6592rxl dtEpLPhQXzL2MzlrLyefGCEGsASQ513JO5B0yBODmY/ZGrkw0iFwx274fi2Qw8Hp GMOp037AbyCA7KB9vT+OSCNXH5wimvluTKQdRiOne5A3+/urczhbRJ/nJa/TXb5d kCAdV1+j7a+wYBU4PNMpAWy27WCicSUsYjJAqivdFhf963zBnGpnGhbhTKyZI9ri ju59ifnOyXHLobgIXEKQxGMIbKsdYiaKzz/YBKtT2NWWUJGdPRawMW2hBkhy1hNQ w/vkR8jizsrgYsq1G4/uWaQj6deRPVuBOOuY6VSyiWJ8ESfn9TRnZLN7JeLEfKSR LliGsaaSQcdpcYTihEMc8LXq2VUFwOlcR7YKdyZOE6ZMSGRAeACDG79Gdgq/+b7m osLwVT8a/9eIPp+p/8gaGBwAsji09K9A2NQFL9SnX9EliVcuSsB5gFo8K/n9aAmZ /EIBm5jgzqRoVF0= =w30O -----END PGP SIGNATURE----- Wed Oct 30 12:23:18 UTC 2024 I: Checking whether the package is not for us Wed Oct 30 12:23:18 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Oct 30 12:23:18 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Oct 30 12:26:56 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 30 00:23:20 -12 2024 I: pbuilder-time-stamp: 1730291000 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-2.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 24 20:03:27 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: no acceptable signature found dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2037229/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ea4b4a29d67c45e9b5623abc98125fdc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2037229' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/pbuilderrc_8hJ8 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/b1 --logfile b1/build.log spoa_4.1.4-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2037229/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19949 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libcpu-features-dev; however: Package libcpu-features-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcpu-features-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After unpacking 155 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 42 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.107 [11.0 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 googletest all 1.15.2-1 [514 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 57 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libcpu-features-dev amd64 0.9.0-1+b1 [22.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.15.2-1 [259 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Fetched 39.7 MB in 5s (7256 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19949 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-2_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.30/Modules/FetchContent.cmake:1953 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:53 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/share/cmake-3.30/Modules/FetchContent.cmake:1978 (cmake_language) CMakeLists.txt:53 (FetchContent_Populate) -- Configuring done (2.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -mavx2 -MD -MT CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 5%] Built target spoa_avx2 make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 11%] Building CXX object CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse4.1 -MD -MT CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 11%] Built target spoa_sse4.1 make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 17%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse2 -MD -MT CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 17%] Built target spoa_sse2 make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 23%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 29%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 41%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 47%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 52%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 52%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 58%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 70%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 76%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 76%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 82%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 88%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 88%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [ 94%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (155 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (70 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (105 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (147 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (79 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (120 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (153 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (74 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (108 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (138 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (73 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (106 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (141 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (73 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (106 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (139 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (73 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (113 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (149 ms) [----------] 19 tests from SpoaTest (2136 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (2136 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/cmake /usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libspoa-dev//usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols doesn't match completely debian/libspoa7.0.0.symbols.amd64 --- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.1.4-2_amd64) +++ dpkg-gensymbolsugNYHk 2024-10-30 12:26:47.558769790 +0000 @@ -28,8 +28,8 @@ GetXCR0Eax@Base 4.0.7 StackLineReader_Initialize@Base 4.0.7 StackLineReader_NextLine@Base 4.0.7 - (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 _ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaa@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaa@Base 4.0.5 @@ -120,10 +120,10 @@ _ZN4spoa5GraphD1Ev@Base 1.1.3 _ZN4spoa5GraphD2Ev@Base 1.1.3 _ZN4spoa7VersionB5cxx11Ev@Base 4.1.4 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 _ZNK4spoa15AlignmentEngine23WorstCaseAlignmentScoreEll@Base 4.0.5 _ZNK4spoa5Graph15ExtractSubgraphEPKNS0_4NodeES3_@Base 4.0.5 _ZNK4spoa5Graph15UpdateAlignmentERKSt6vectorIPKNS0_4NodeESaIS4_EEPS1_ISt4pairIiiESaISA_EE@Base 4.0.5 @@ -134,7 +134,7 @@ _ZNK4spoa5Graph8PrintDotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 4.0.5 _ZNK4spoa5Graph8SubgraphEjjPSt6vectorIPKNS0_4NodeESaIS4_EE@Base 4.0.5 _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.5 - (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 (optional)_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 4.1.4 _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3 _ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_@Base 4.0.5 @@ -142,38 +142,38 @@ _ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE17_M_reallocate_mapEmb@Base 4.0.5 _ZNSt6vectorIN4spoa7StorageESaIS1_EE17_M_default_appendEm@Base 4.1.4 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRS5_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_@Base 4.0.5 (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_appendIJS3_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRKS3_EEEvDpOT_@Base 4.1.4 (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRS3_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev@Base 4.1.4 - (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.7 - (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.7 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJRjiEEEvDpOT_@Base 4.1.4 (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJijEEEvDpOT_@Base 4.1.4 (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJjjEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 - (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJiEEEvDpOT_@Base 4.1.4 (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJjEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 4.1.4 +#MISSING: 4.1.4-2# (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 4.1.4 _ZTIN4spoa15AlignmentEngineE@Base 1.1.3 _ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EEE@Base 4.0.5 _ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE@Base 4.0.5 @@ -189,4 +189,4 @@ _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE@Base 4.0.5 _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EEE@Base 4.0.5 _ZTVN4spoa19SisdAlignmentEngineE@Base 1.1.3 - (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.4-2# (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_amd64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_amd64.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_amd64.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_amd64.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-2_amd64.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2037229 and its subdirectories I: Current time: Wed Oct 30 00:26:56 -12 2024 I: pbuilder-time-stamp: 1730291216 Wed Oct 30 12:26:57 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Oct 30 12:26:57 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Oct 30 12:29:53 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Oct 30 12:29:53 UTC 2024 I: spoa_4.1.4-2_amd64.changes: Format: 1.8 Date: Wed, 24 Jul 2024 21:59:08 +0200 Source: spoa Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym Architecture: amd64 Version: 4.1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa7.0.0 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 1075532 Changes: spoa (4.1.4-2) unstable; urgency=medium . * d/libspoa7.0.0.symbols.amd64: mark some compiler symbols as optional. (Closes: #1075532) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: d0c176dd456525ff45b5b569e51e8aa1a2a17a81 9532 libspoa-dev_4.1.4-2_amd64.deb 2ad508cb4925ca23e443a1a9cca9d4d374ff099e 941432 libspoa7.0.0-dbgsym_4.1.4-2_amd64.deb fdfaa7549d5623e21ecfc97322dc2686886e902c 73956 libspoa7.0.0_4.1.4-2_amd64.deb a47d26870d40caa3a3a9445126c5c65e6eb9d3ef 246552 spoa-dbgsym_4.1.4-2_amd64.deb a8483fd2c3a194a3bc4a3f844ac70c01c9a0de27 7279 spoa_4.1.4-2_amd64.buildinfo 2560977b91d051a249e0c54ee602f5882d61f6e1 38012 spoa_4.1.4-2_amd64.deb Checksums-Sha256: 746d5610cbda273ec54f814cf427a8fc7efa62627b981359e1328a11ab1a56c9 9532 libspoa-dev_4.1.4-2_amd64.deb f38b3b769099ddf51bc196fa70fca3d5ca724d514186b55080c93d19644d9692 941432 libspoa7.0.0-dbgsym_4.1.4-2_amd64.deb 5d4806dfedeca688a96eefaa2180335246801759e1664b8c914aadbe20321254 73956 libspoa7.0.0_4.1.4-2_amd64.deb 25b81f09dda4e4bcdb7625d76a07eba3d705db813542eb0f1fb6abbe3f064b7d 246552 spoa-dbgsym_4.1.4-2_amd64.deb b82989b22c787c77556278c8fb8b638212745f73f671d7a6748036f251702719 7279 spoa_4.1.4-2_amd64.buildinfo c37fbae1f7b692d5b8e9e05b641af9dc19cf6bf8155a410033e70e5245f79c93 38012 spoa_4.1.4-2_amd64.deb Files: 32396cb5449561cf9da9387fa5e2da24 9532 libdevel optional libspoa-dev_4.1.4-2_amd64.deb f7d18c8c182316d1d26930e4d78e4d5a 941432 debug optional libspoa7.0.0-dbgsym_4.1.4-2_amd64.deb 2aaf10b8e1d62148446c6080399bfc8d 73956 libs optional libspoa7.0.0_4.1.4-2_amd64.deb a3fc6897209f4a76bdaa44e7c98cb52f 246552 debug optional spoa-dbgsym_4.1.4-2_amd64.deb be22821e96b4941f422d3879366a2ed6 7279 science optional spoa_4.1.4-2_amd64.buildinfo 83142cd6ad904824d554f89a06ca35e7 38012 science optional spoa_4.1.4-2_amd64.deb Wed Oct 30 12:29:54 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_25-21833.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/spoa_4.1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/spoa_4.1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/spoa_4.1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/b1/spoa_4.1.4-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tvZKygzn/b2/spoa_4.1.4-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.417s) 0.417s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.033s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 773ms CPU time consumed: 765ms Wed Oct 30 12:29:56 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 30 12:29:56 UTC 2024 I: spoa from trixie built successfully and reproducibly on amd64. Wed Oct 30 12:29:57 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Oct 30 12:29:57 UTC 2024 I: Submitting 8.0K b1/spoa_4.1.4-2_amd64.buildinfo.asc Wed Oct 30 12:30:01 UTC 2024 I: Submitting 8.0K b2/spoa_4.1.4-2_amd64.buildinfo.asc Wed Oct 30 12:30:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Oct 30 12:30:05 UTC 2024 I: Done submitting .buildinfo files. Wed Oct 30 12:30:05 UTC 2024 I: Removing signed spoa_4.1.4-2_amd64.buildinfo.asc files: removed './b1/spoa_4.1.4-2_amd64.buildinfo.asc' removed './b2/spoa_4.1.4-2_amd64.buildinfo.asc'