Fri Dec 6 22:50:22 UTC 2024 I: starting to build snpsift/trixie/amd64 on jenkins on '2024-12-06 22:50' Fri Dec 6 22:50:22 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/25534/console.log Fri Dec 6 22:50:22 UTC 2024 I: Downloading source for trixie/snpsift=5.2.e+dfsg-1 --2024-12-06 22:50:22-- http://deb.debian.org/debian/pool/main/s/snpsift/snpsift_5.2.e%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2429 (2.4K) [text/prs.lines.tag] Saving to: ‘snpsift_5.2.e+dfsg-1.dsc’ 0K .. 100% 295M=0s 2024-12-06 22:50:22 (295 MB/s) - ‘snpsift_5.2.e+dfsg-1.dsc’ saved [2429/2429] Fri Dec 6 22:50:22 UTC 2024 I: snpsift_5.2.e+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snpsift Binary: libsnpsift-java, snpsift, libsnpsift-java-doc Architecture: all Version: 5.2.e+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Homepage: https://pcingola.github.io/SnpEff/ss_introduction/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/snpsift Vcs-Git: https://salsa.debian.org/med-team/snpsift.git Testsuite: autopkgtest Testsuite-Triggers: default-jdk-headless, junit5 Build-Depends: debhelper-compat (= 13), antlr4, antlr4-doc, javahelper, junit5, libcommons-math3-java, libcommons-math3-java-doc, libhtsjdk-java, libhtsjdk-java-doc, libmaven-assembly-plugin-java, libmaven-javadoc-plugin-java, libsnpeff-java, libsnpeff-java-doc, libtrove3-java, libtrove3-java-doc, maven-debian-helper Package-List: libsnpsift-java deb java optional arch=all libsnpsift-java-doc deb doc optional arch=all snpsift deb java optional arch=all Checksums-Sha1: e5d56bc6dec034511f9b87855fc06ed752f9b31a 6505900 snpsift_5.2.e+dfsg.orig.tar.xz 78404b95925ddc93da0dfa5eba961493f9c318e2 7460 snpsift_5.2.e+dfsg-1.debian.tar.xz Checksums-Sha256: 996ab84add816354cd4007779e10c109cee8290386586cbc409caae9b8cfe406 6505900 snpsift_5.2.e+dfsg.orig.tar.xz 3b1f852e5d6ed938477f690f4625d4bd15d528f2874e4edb01dc9e2b33e4da29 7460 snpsift_5.2.e+dfsg-1.debian.tar.xz Files: 4178f3bca437f48b93596d5237392cdf 6505900 snpsift_5.2.e+dfsg.orig.tar.xz 9c00755fc0dd5d7b9a75fa033f173983 7460 snpsift_5.2.e+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmcDyBAACgkQYAMWptwn dHbnvg/5AbIztzxkO4prk7g0Y0lpNQqAwCkmk2hOnTmqmw2GzfqkZokV4QWsVuPz qvn2nFjBWyYyP9ELoNpg+USqmXpnWfp9r2XVLj36Dblkd/nCz/s6vR71gg906gHv 3V+ClVFUbqYBQcnSk47XnCct3RyXdeouoeZ8WakPz3u3xQq5ghb3hPS7M9j+uvc5 t4a2aws3Us+lnNxrgjrk+nQMKMzlAuhP5naQkW71m2br1ZZJQ6zhBJtiudr7/ADR XiUW61D+YGjuH3R+xNzMUeUDq12fyrZG0AoYaO8+TfcdHSxGypUBv7EIIoWh4bd4 57iaITzY3iAqRUrzcBbbA+GqSpFFVwRsB/uB61+JWGX4tn91/oy+mcTDjCH4xXsZ eAYd4Xm1odb60mrDSDQ5zxrybylUTHHA0/ZV/BbcRr9N9+cEhLmvyQwUvgDFh4Ah hASmu2BZiTUU5Rg3O6ziudHX1miP3RAaux2glWT+TjkgdC23iVWDcMPqs28ni5m3 bBhsytODygLkZup/CU0BN1RwnsczCxUyt8F4f+ycAioCekDPxgFSd+wndy/j2zY9 WnCIHx+UA39VWFHZB71UH7+E4hhCe+fEfW8GYOx+/1wDJSHicJbN6OwdQADMbN6o KRXGpLcDn+NV6liQhdgnI3+1lUfsgi4gp9zXs4ChImTpYm4vOtA= =l8MQ -----END PGP SIGNATURE----- Fri Dec 6 22:50:22 UTC 2024 I: Checking whether the package is not for us Fri Dec 6 22:50:22 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Dec 6 22:50:22 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Dec 6 22:57:47 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 8 17:13:26 -12 2026 I: pbuilder-time-stamp: 1767935606 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [snpsift_5.2.e+dfsg-1.dsc] I: copying [./snpsift_5.2.e+dfsg.orig.tar.xz] I: copying [./snpsift_5.2.e+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 7 11:37:52 2024 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./snpsift_5.2.e+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting snpsift in snpsift-5.2.e+dfsg dpkg-source: info: unpacking snpsift_5.2.e+dfsg.orig.tar.xz dpkg-source: info: unpacking snpsift_5.2.e+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying alter_pom_for_debian_packaging.patch dpkg-source: info: applying omit_unused_junit_classes.patch dpkg-source: info: applying Debian_specific_config_file.patch dpkg-source: info: applying test_scope_for_junit.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4160292/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='038c1351ab81458f84f812e31965e588' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4160292' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/pbuilderrc_ufzK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/b1 --logfile b1/build.log snpsift_5.2.e+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4160292/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), antlr4, antlr4-doc, javahelper, junit5, libcommons-math3-java, libcommons-math3-java-doc, libhtsjdk-java, libhtsjdk-java-doc, libmaven-assembly-plugin-java, libmaven-javadoc-plugin-java, libsnpeff-java, libsnpeff-java-doc, libtrove3-java, libtrove3-java-doc, maven-debian-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on antlr4; however: Package antlr4 is not installed. pbuilder-satisfydepends-dummy depends on antlr4-doc; however: Package antlr4-doc is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on junit5; however: Package junit5 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java-doc; however: Package libcommons-math3-java-doc is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java-doc; however: Package libhtsjdk-java-doc is not installed. pbuilder-satisfydepends-dummy depends on libmaven-assembly-plugin-java; however: Package libmaven-assembly-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libmaven-javadoc-plugin-java; however: Package libmaven-javadoc-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libsnpeff-java; however: Package libsnpeff-java is not installed. pbuilder-satisfydepends-dummy depends on libsnpeff-java-doc; however: Package libsnpeff-java-doc is not installed. pbuilder-satisfydepends-dummy depends on libtrove3-java; however: Package libtrove3-java is not installed. pbuilder-satisfydepends-dummy depends on libtrove3-java-doc; however: Package libtrove3-java-doc is not installed. pbuilder-satisfydepends-dummy depends on maven-debian-helper; however: Package maven-debian-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr4{a} antlr4-doc{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-doc{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} junit4{a} junit5{a} libactivation-java{a} libantlr3-runtime-java{a} libantlr4-runtime-java{a} libaopalliance-java{a} libapache-pom-java{a} libapfloat-java{a} libapiguardian-java{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libassuan9{a} libatinject-jsr330-api-java{a} libb-hooks-op-check-perl{a} libbiojava6-java{a} libbsh-java{a} libcdi-api-java{a} libcharts4j-java{a} libciftools-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcodemodel-java{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-digester-java{a} libcommons-exec-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-math3-java{a} libcommons-math3-java-doc{a} libcommons-parent-java{a} libcommons-text-java{a} libcommons-validator-java{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdistlib-java{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} liberror-prone-java{a} libexec-maven-plugin-java{a} libexpat1{a} libfastinfoset-java{a} libfastutil-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfreemarker-java{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgoogle-gson-java{a} libgssapi-krb5-2{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhtsjdk-java{a} libhtsjdk-java-doc{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libicu4j-java{a} libicu72{a} libimport-into-perl{a} libinchi1.07{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libitext5-java{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjetty9-java{a} libjgrapht-java{a} libjgraphx-java{a} libjheaps-java{a} libjmol-java{a} libjni-inchi-java{a} libjni-inchi-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-jquery-ui-theme-base{a} libjs-mathjax{a} libjson-simple-java{a} libjsonp-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblog4j1.2-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmaven-archiver-java{a} libmaven-artifact-transfer-java{a} libmaven-assembly-plugin-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-invoker-java{a} libmaven-jar-plugin-java{a} libmaven-javadoc-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-resolver-1.6-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmjson-java{a} libmmtf-java{a} libmodule-runtime-perl{a} libmoo-perl{a} libmsgpack-java{a} libnaga-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libngs-java{a} libngs-jni{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libparams-classify-perl{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interactivity-api-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libplexus-xml-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox2-java{a} libreadline8t64{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libservlet-api-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsnpeff-java{a} libsnpeff-java-doc{a} libstax-ex-java{a} libstreambuffer-java{a} libstringtemplate4-java{a} libsub-quote-perl{a} libsurefire-java{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtreelayout-java{a} libtrove3-java{a} libtrove3-java-doc{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} libunivocity-parsers-java{a} liburi-perl{a} libvecmath-java{a} libvelocity-tools-java{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-http-shaded-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libxbean-reflect-java{a} libxerces2-java{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxml2-utils{a} libxsom-java{a} libxz-java{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} media-types{a} ncbi-vdb-data{a} netbase{a} openjdk-21-doc{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} unzip{a} velocity{a} wdiff{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libasound2t64 libbiojava6-java-doc libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjline3-java libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian linux-sysctl-defaults lynx pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace wget 0 packages upgraded, 321 newly installed, 0 to remove and 0 not upgraded. Need to get 310 MB of archives. After unpacking 1094 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-1 [815 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-1 [2163 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-1 [1970 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-1 [677 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 java-common all 0.76 [6776 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.106-1 [1392 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.3.0-3 [55.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 openjdk-21-jre-headless amd64 21.0.5+11-1 [41.8 MB] Get: 47 http://deb.debian.org/debian trixie/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get: 48 http://deb.debian.org/debian trixie/main amd64 ant all 1.10.15-1 [2163 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 ant-optional all 1.10.15-1 [456 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libantlr4-runtime-java all 4.9.2-2 [317 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libantlr3-runtime-java all 3.5.3-2 [165 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libicu4j-java all 73.2-1 [16.4 MB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libjsonp-java all 1.1.2-4 [127 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libstringtemplate4-java all 4.3.3-1 [247 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libtreelayout-java all 1.0.3-2 [27.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 antlr4 all 4.9.2-2 [1399 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui-theme-base all 1.12.1+dfsg-1.1 [44.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 openjdk-21-doc all 21.0.5+11-1 [13.2 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 default-jdk-doc amd64 2:1.21-76 [3264 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 antlr4-doc all 4.9.2-2 [852 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 75 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 openjdk-21-jdk-headless amd64 21.0.5+11-1 [82.8 MB] Get: 84 http://deb.debian.org/debian trixie/main amd64 default-jdk-headless amd64 2:1.21-76 [1124 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnpth0t64 amd64 1.6-3.1+b1 [18.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 dirmngr amd64 2.2.45-2 [368 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 gnupg-l10n all 2.2.45-2 [705 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.45-2 [531 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 pinentry-curses amd64 1.2.1-4+b1 [79.7 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 gpg-agent amd64 2.2.45-2 [251 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 gpgsm amd64 2.2.45-2 [255 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 gnupg all 2.2.45-2 [376 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 100 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 103 http://deb.debian.org/debian trixie/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 131 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 wdiff amd64 1.2.2-6 [119 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 devscripts all 2.24.5 [1080 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 jarwrapper all 0.80 [9692 B] Get: 144 http://deb.debian.org/debian trixie/main amd64 javahelper all 0.80 [80.4 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 junit4 all 4.13.2-5 [350 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] Get: 148 http://deb.debian.org/debian trixie/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] Get: 149 http://deb.debian.org/debian trixie/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libpicocli-java all 4.6.2-2 [390 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 junit5 all 5.10.3-1 [2459 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get: 155 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 156 http://deb.debian.org/debian trixie/main amd64 libapfloat-java all 1.14.0-2 [725 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libargs4j-java all 2.33-2 [138 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libasm-java all 9.7.1-1 [391 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 160 http://deb.debian.org/debian trixie/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libciftools-java all 6.0.0-1 [2211 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libcommons-math-java all 2.2-9 [933 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libitext5-java all 5.5.13.3-4 [2667 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libjackson2-annotations-java all 2.14.0-1 [68.8 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libjackson2-core-java all 2.14.1-1 [447 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libjackson2-databind-java all 2.14.0-1 [1584 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-5 [214 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.17.0-1 [488 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libcommons-lang3-java all 3.17.0-1 [641 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libmaven-parent-java all 43-2 [6252 B] Get: 183 http://deb.debian.org/debian trixie/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libmaven-resolver-1.6-java all 1.6.3-2.1 [558 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 189 http://deb.debian.org/debian trixie/main amd64 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 192 http://deb.debian.org/debian trixie/main amd64 libcdi-api-java all 1.2-4 [55.3 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libmaven3-core-java all 3.8.8-2 [1579 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libsnappy-jni amd64 1.1.10.7-1 [6492 B] Get: 203 http://deb.debian.org/debian trixie/main amd64 libsnappy-java all 1.1.10.7-1 [87.6 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libxz-java all 1.9-1 [143 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-11 [164 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 librngom-java all 2.3.0.1-11 [292 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libxsom-java all 2.3.0.1-11 [401 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 libtxw2-java all 2.3.0.1-11 [134 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libjaxb-java all 2.3.0.1-11 [1980 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libmaven-archiver-java all 3.6.2-1 [26.1 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libcommons-text-java all 1.12.0-1 [222 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libfastutil-java all 8.5.15+dfsg-1 [20.0 MB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libjheaps-java all 0.14-2 [144 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libjgraphx-java all 2.1.0.7-4 [807 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libjgrapht-java all 1.5.2-1 [1610 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libinchi1.07 amd64 1.07.1+dfsg-5 [556 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libjni-inchi-jni amd64 0.8+dfsg-8 [9188 B] Get: 234 http://deb.debian.org/debian trixie/main amd64 libcommons-exec-java all 1.3-2 [48.1 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libexec-maven-plugin-java all 3.1.0-2 [66.7 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-incremental-java all 1.1-6 [9916 B] Get: 237 http://deb.debian.org/debian trixie/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libxbean-reflect-java all 4.5-9 [132 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libplexus-compiler-java all 2.13.0-1 [99.5 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libqdox2-java all 2.0.3-1 [296 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libplexus-languages-java all 1.1.1-2 [47.3 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libmaven-compiler-plugin-java all 3.13.0-1 [78.8 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libjni-inchi-java all 0.8+dfsg-8 [33.6 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libnaga-java all 3.0+svn80-5 [43.5 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libjmol-java all 16.2.33+dfsg-1 [10.4 MB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libjson-simple-java all 2.3.0-1 [63.8 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libmsgpack-java all 0.9.6-1 [161 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libmmtf-java all 1.0.11-1 [187 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libbiojava6-java all 6.1.0+dfsg-5 [5359 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libbsh-java all 2.0b4-20 [291 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libcharts4j-java all 1.3-4 [162 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libcommons-digester-java all 1.8.1-7 [138 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libcommons-math3-java-doc all 3.6.1-3 [1560 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libcommons-validator-java all 1:1.9.0-1 [191 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libdistlib-java all 1.0-5 [72.5 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libdoxia-core-java all 2.0.0-1 [149 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libplexus-xml-java all 3.0.1-2 [93.7 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libdoxia-java all 2.0.0-1 [113 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-api-java all 4.0.0-1 [6724 B] Get: 268 http://deb.debian.org/debian trixie/main amd64 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 velocity all 1.7-7 [431 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libplexus-velocity-java all 1.2-4 [9676 B] Get: 271 http://deb.debian.org/debian trixie/main amd64 liboro-java all 2.0.8a-14 [70.5 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libvelocity-tools-java all 2.0-9 [311 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 libdoxia-sitetools-java all 2.0.0-1 [176 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libel-api-java all 3.0.0-3 [64.9 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libfreemarker-java all 2.3.32-2 [1546 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7 [157 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libngs-jni amd64 3.0.9+dfsg-7 [25.6 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libngs-java amd64 3.0.9+dfsg-7 [112 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 libhtsjdk-java all 4.1.0+dfsg-2 [1833 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 libhtsjdk-java-doc all 4.1.0+dfsg-2 [1044 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 libjansi-java all 2.4.1-2 [100 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libjetty9-java all 9.4.56-1 [2964 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libjtidy-java all 7+svn20110807-5 [250 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libmaven-common-artifact-filters-java all 3.4.0-1 [47.7 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libmaven-artifact-transfer-java all 0.13.1-2 [158 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libplexus-build-api-java all 0.0.7-4 [10.3 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libmaven-filtering-java all 3.4.0-1 [51.4 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libmaven-assembly-plugin-java all 3.4.2-2 [242 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libmaven-invoker-java all 3.3.0-1 [29.1 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 libplexus-interactivity-api-java all 1.3-1 [11.6 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 libmaven-javadoc-plugin-java all 3.10.1-2 [451 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] Get: 304 http://deb.debian.org/debian trixie/main amd64 libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] Get: 306 http://deb.debian.org/debian trixie/main amd64 libmaven-plugin-tools-java all 3.10.2-1 [245 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-exec-java all 2.0.0-1 [23.9 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libmaven-resources-plugin-java all 3.3.1-1 [27.5 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libmaven-site-plugin-java all 3.21.0-1 [106 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libtrove3-java all 3.0.3-5 [2146 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libsnpeff-java all 5.2.e+dfsg-1 [2157 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libsnpeff-java-doc all 5.2.e+dfsg-1 [668 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 libsurefire-java all 2.22.3-3 [1284 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 libtrove3-java-doc all 3.0.3-5 [823 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libwagon-file-java all 3.5.3-1 [8388 B] Get: 316 http://deb.debian.org/debian trixie/main amd64 libwagon-http-shaded-java all 3.5.3-1 [1341 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 libxml2-utils amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [99.4 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 maven all 3.8.8-2 [19.5 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.5 [108 kB] Fetched 310 MB in 17s (18.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20313 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. 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Setting up openssl (3.3.2-2) ... Setting up libjsonp-java (1.1.2-4) ... Setting up libinchi1.07 (1.07.1+dfsg-5) ... Setting up libcdi-api-java (1.2-4) ... Setting up libsnappy-jni (1.1.10.7-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libargs4j-java (2.33-2) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libnaga-java (3.0+svn80-5) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libjetty9-java (9.4.56-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libstringtemplate4-java (4.3.3-1) ... Setting up libplexus-languages-java (1.1.1-2) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.4.7-8) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libmaven-parent-java (43-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:amd64 (2:3.106-1) ... Setting up libciftools-java (6.0.0-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libjackson2-databind-java (2.14.0-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up librngom-java (2.3.0.1-11) ... Setting up libjni-inchi-jni (0.8+dfsg-8) ... Setting up libjgraphx-java (2.1.0.7-4) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libcommons-beanutils-java (1.9.4-2) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libsnappy-java (1.1.10.7-1) ... Setting up libxsom-java (2.3.0.1-11) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libxml2-utils (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up velocity (1.7-7) ... Setting up gpg-agent (2.2.45-2) ... Setting up openjdk-21-jre-headless:amd64 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libcommons-io-java (2.17.0-1) ... Setting up libcommons-digester-java (1.8.1-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libdistlib-java (1.0-5) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmaven-resolver-1.6-java (1.6.3-2.1) ... Setting up dirmngr (2.2.45-2) ... Setting up libmaven-filtering-java (3.4.0-1) ... Setting up openjdk-21-doc (21.0.5+11-1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libmaven-common-artifact-filters-java (3.4.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up libmaven-resources-plugin-java (3.3.1-1) ... Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7) ... Setting up libngs-jni:amd64 (3.0.9+dfsg-7) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-1) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcommons-validator-java (1:1.9.0-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.8-1) ... Setting up libmaven-invoker-java (3.3.0-1) ... Setting up debhelper (13.20) ... Setting up default-jdk-doc (2:1.21-76) ... Setting up antlr4-doc (4.9.2-2) ... Setting up libmaven-clean-plugin-java (3.2.0-2) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libngs-java:amd64 (3.0.9+dfsg-7) ... Setting up libhtsjdk-java (4.1.0+dfsg-2) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up libmaven-archiver-java (3.6.2-1) ... Setting up python3 (3.12.6-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.24.5) ... Setting up libguava-java (32.0.1-1) ... Setting up javahelper (0.80) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libplexus-i18n-java (1.0-beta-10-6) ... Setting up libplexus-container-default1.5-java (2.1.1-1) ... Setting up libplexus-velocity-java (1.2-4) ... Setting up libmaven3-core-java (3.8.8-2) ... Setting up libmaven-shared-incremental-java (1.1-6) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-bsh-factory-java (1.0~alpha7-5) ... Setting up libplexus-compiler-java (2.13.0-1) ... Setting up libmaven-compiler-plugin-java (3.13.0-1) ... Setting up libjni-inchi-java (0.8+dfsg-8) ... Setting up libmaven-artifact-transfer-java (0.13.1-2) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libjmol-java (16.2.33+dfsg-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libmaven-assembly-plugin-java (3.4.2-2) ... Setting up libcommons-text-java (1.12.0-1) ... Setting up libmsgpack-java (0.9.6-1) ... Setting up libmmtf-java (1.0.11-1) ... Setting up libjgrapht-java (1.5.2-1) ... Setting up libdoxia-core-java (2.0.0-1) ... Setting up libdoxia-java (2.0.0-1) ... Setting up libmaven-reporting-api-java (4.0.0-1) ... Setting up libmaven-reporting-exec-java (2.0.0-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven-repo-helper (1.11) ... Setting up maven (3.8.8-2) ... update-alternatives: using /usr/share/maven/bin/mvn to provide /usr/bin/mvn (mvn) in auto mode Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up openjdk-21-jdk-headless:amd64 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up antlr4 (4.9.2-2) ... Setting up libplexus-ant-factory-java (1.0~alpha2.1-4) ... Setting up ant-optional (1.10.15-1) ... Setting up default-jdk-headless (2:1.21-76) ... Setting up junit5 (5.10.3-1) ... Setting up libmaven-plugin-tools-java (3.10.2-1) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libsurefire-java (2.22.3-3) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-11) ... Setting up libtxw2-java (2.3.0.1-11) ... Setting up libjaxb-java (2.3.0.1-11) ... Setting up libbiojava6-java (6.1.0+dfsg-5) ... Setting up libsnpeff-java (5.2.e+dfsg-1) ... Processing triggers for sgml-base (1.31) ... Setting up libvelocity-tools-java (2.0-9) ... Setting up libdoxia-sitetools-java (2.0.0-1) ... Setting up libmaven-site-plugin-java (3.21.0-1) ... Setting up maven-debian-helper (2.6.5) ... Setting up libmaven-javadoc-plugin-java (3.10.1-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/snpsift-5.2.e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snpsift_5.2.e+dfsg-1_source.changes dpkg-buildpackage: info: source package snpsift dpkg-buildpackage: info: source version 5.2.e+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with javahelper dh_auto_clean bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibsnpsift-java jh_clean Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/snpsift-5.2.e+dfsg' # Removing all the sidx files created during the tests. Then one of them must # be restored, it has been saved prior to the tests. find . \( -name "*.sidx" -a ! -name "gnomad_db_multiple_entries.vcf.sidx" \) -delete if [ -e test/ann/gnomad_db_multiple_entries.vcf.sidx.old ]; then \ mv test/ann/gnomad_db_multiple_entries.vcf.sidx.old test/ann/gnomad_db_multiple_entries.vcf.sidx; \ fi # Restoring another file modified during the tests if [ -e test/gt_test.01.gt.vcf.old ]; then \ mv test/gt_test.01.gt.vcf.old test/gt_test.01.gt.vcf; \ fi dh_clean make[1]: Leaving directory '/build/reproducible-path/snpsift-5.2.e+dfsg' debian/rules binary dh binary --with javahelper dh_update_autotools_config dh_autoreconf dh_auto_configure mh_patchpoms -plibsnpsift-java --debian-build --keep-pom-version --maven-repo=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian/maven-repo Failed to parse /build/reproducible-path/snpsift-5.2.e+dfsg/debian/maven-repo/org/biojava/biojava-structure/6.x/biojava-structure-6.x.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.repo.Repository.scanOnce(Repository.java:196) at org.debian.maven.repo.POMTransformer.usePluginVersionsFromRepository(POMTransformer.java:107) at org.debian.maven.repo.POMTransformer.main(POMTransformer.java:779) Failed to parse /build/reproducible-path/snpsift-5.2.e+dfsg/debian/maven-repo/org/biojava/biojava-structure/6.1.0/biojava-structure-6.1.0.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.repo.Repository.scanOnce(Repository.java:196) at org.debian.maven.repo.POMTransformer.usePluginVersionsFromRepository(POMTransformer.java:107) at org.debian.maven.repo.POMTransformer.main(POMTransformer.java:779) jh_linkjars dh_auto_build /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/snpsift-5.2.e\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian/maven-repo --batch-mode package javadoc:jar javadoc:aggregate -DskipTests -Dnotimestamp=true -Dlocale=en_US OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ------------------------< org.snpsift:snpsift >------------------------- [INFO] Building SnpSift 5.2 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact org.apache.maven.plugins:maven-surefire-plugin:jar:2.12.4 has been relocated to org.apache.maven.plugins:maven-surefire-plugin:jar:2.22.3 [WARNING] The artifact org.apache.maven.plugins:maven-jar-plugin:jar:2.4 has been relocated to org.apache.maven.plugins:maven-jar-plugin:jar:3.3.0 [WARNING] The POM for org.biojava:biojava-structure:jar:6.x is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details [INFO] [INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ snpsift --- [INFO] skip non existing resourceDirectory /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ snpsift --- [INFO] Recompiling the module because of changed source code. [INFO] Compiling 144 source files with javac [debug deprecation release 21] to target/classes [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:[112,25] org.antlr.v4.runtime.ANTLRInputStream in org.antlr.v4.runtime has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:[112,54] org.antlr.v4.runtime.ANTLRInputStream in org.antlr.v4.runtime has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[116,45] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[116,80] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[116,116] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[116,152] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[117,45] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[117,84] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:[117,119] factorialLog(int) in org.apache.commons.math3.util.ArithmeticUtils has been deprecated [INFO] [INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ snpsift --- [INFO] skip non existing resourceDirectory /build/reproducible-path/snpsift-5.2.e+dfsg/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ snpsift --- [INFO] Recompiling the module because of changed dependency. [INFO] Compiling 46 source files with javac [debug deprecation release 21] to target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ snpsift --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ snpsift --- [INFO] Building jar: /build/reproducible-path/snpsift-5.2.e+dfsg/target/snpsift-5.2.jar [INFO] [INFO] --- maven-javadoc-plugin:3.10.1:jar (default-cli) @ snpsift --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/dataFrame/dataFrameColumn/DataFrameColumnString.java:34: warning: @param argument "dataSize" is not a parameter name. [WARNING] * @param dataSize: Total size of all strings (i.e. memory used) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:31: warning: @param argument "starType" is not a parameter name. [WARNING] * @param starType [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:32: warning: @param argument "max" is not a parameter name. [WARNING] * @param max [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:138: warning: @param argument "starType" is not a parameter name. [WARNING] * @param starType [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:552: warning: @return tag cannot be used in method with void return type. [WARNING] public void line(Individual parent1, Individual parent2, Individual child) { [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:612: warning: @param argument "xpos" is not a parameter name. [WARNING] * @param xpos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:626: warning: @param argument "xpos" is not a parameter name. [WARNING] * @param xpos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdAnnotate.java:403: warning: invalid input: '&' [WARNING] * @param createList : If true, return a list with all annotated entries (used for test cases & debugging) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdAnnotateMem.java:290: warning: invalid input: '&' [WARNING] * @param createList : If true, return a list with all annotated entries (used for test cases & debugging) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilter.java:32: warning: invalid input: '<' [WARNING] * - Int, double fields: FiledZZ == N, FiledZZ < X, FiledZZ > X, FiledZZ <= X, FiledZZ >= X [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilter.java:32: warning: invalid input: '<' [WARNING] * - Int, double fields: FiledZZ == N, FiledZZ < X, FiledZZ > X, FiledZZ <= X, FiledZZ >= X [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilterGt.java:25: warning: invalid input: '<' [WARNING] * e.g. if the expression is "GQ < 20", all genotypes [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervals.java:101: warning: @param argument "fileName" is not a parameter name. [WARNING] * @param fileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervalsIndex.java:55: warning: @param argument "bedFileNames" is not a parameter name. [WARNING] * @param bedFileNames [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervalsIndex.java:127: warning: @param argument "fileName" is not a parameter name. [WARNING] * @param fileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:106: warning: @param argument "tfamFile" is not a parameter name. [WARNING] * @param tfamFile [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:107: warning: @param argument "vcfFileName" is not a parameter name. [WARNING] * @param vcfFileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:108: warning: @param argument "outputDir" is not a parameter name. [WARNING] * @param outputDir [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:109: warning: @param argument "chrPos" is not a parameter name. [WARNING] * @param chrPos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdVcf2Tped.java:179: warning: @param argument "tpedFile" is not a parameter name. [WARNING] * @param tpedFile [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/arrays/StringArrayBase.java:32: warning: @param argument "numElements" is not a parameter name. [WARNING] * @param numElements : Number of elements in the array [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/database/VariantDatabase.java:230: warning: @param argument "databaseVcfFileName" is not a parameter name. [WARNING] * @param databaseVcfFileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:12: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:131: warning: invalid input: '&' [WARNING] * References: "Principles of population genetics", Hartl & Clark, page 58 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] 47 warnings [INFO] Building jar: /build/reproducible-path/snpsift-5.2.e+dfsg/target/snpsift-5.2-javadoc.jar [INFO] [INFO] ------------------------< org.snpsift:snpsift >------------------------- [INFO] Building SnpSift 5.2 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] >>> maven-javadoc-plugin:3.10.1:aggregate (default-cli) > compile @ snpsift >>> [INFO] [INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ snpsift --- [INFO] skip non existing resourceDirectory /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ snpsift --- [INFO] Nothing to compile - all classes are up to date. [WARNING] Overwriting artifact's file from /build/reproducible-path/snpsift-5.2.e+dfsg/target/snpsift-5.2.jar to /build/reproducible-path/snpsift-5.2.e+dfsg/target/classes [INFO] [INFO] <<< maven-javadoc-plugin:3.10.1:aggregate (default-cli) < compile @ snpsift <<< [INFO] [INFO] [INFO] --- maven-javadoc-plugin:3.10.1:aggregate (default-cli) @ snpsift --- [INFO] Adding the --ignore-source-errors option [INFO] Configuration changed, re-generating javadoc. [WARNING] Javadoc Warnings [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/dataFrame/dataFrameColumn/DataFrameColumnString.java:34: warning: @param argument "dataSize" is not a parameter name. [WARNING] * @param dataSize: Total size of all strings (i.e. memory used) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:31: warning: @param argument "starType" is not a parameter name. [WARNING] * @param starType [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:32: warning: @param argument "max" is not a parameter name. [WARNING] * @param max [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/expression/FieldIterator.java:138: warning: @param argument "starType" is not a parameter name. [WARNING] * @param starType [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:552: warning: @return tag cannot be used in method with void return type. [WARNING] public void line(Individual parent1, Individual parent2, Individual child) { [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:612: warning: @param argument "xpos" is not a parameter name. [WARNING] * @param xpos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/pedigree/PedigreeDraw.java:626: warning: @param argument "xpos" is not a parameter name. [WARNING] * @param xpos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdAnnotate.java:403: warning: invalid input: '&' [WARNING] * @param createList : If true, return a list with all annotated entries (used for test cases & debugging) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdAnnotateMem.java:290: warning: invalid input: '&' [WARNING] * @param createList : If true, return a list with all annotated entries (used for test cases & debugging) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilter.java:32: warning: invalid input: '<' [WARNING] * - Int, double fields: FiledZZ == N, FiledZZ < X, FiledZZ > X, FiledZZ <= X, FiledZZ >= X [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilter.java:32: warning: invalid input: '<' [WARNING] * - Int, double fields: FiledZZ == N, FiledZZ < X, FiledZZ > X, FiledZZ <= X, FiledZZ >= X [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdFilterGt.java:25: warning: invalid input: '<' [WARNING] * e.g. if the expression is "GQ < 20", all genotypes [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervals.java:101: warning: @param argument "fileName" is not a parameter name. [WARNING] * @param fileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervalsIndex.java:55: warning: @param argument "bedFileNames" is not a parameter name. [WARNING] * @param bedFileNames [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdIntervalsIndex.java:127: warning: @param argument "fileName" is not a parameter name. [WARNING] * @param fileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:106: warning: @param argument "tfamFile" is not a parameter name. [WARNING] * @param tfamFile [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:107: warning: @param argument "vcfFileName" is not a parameter name. [WARNING] * @param vcfFileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:108: warning: @param argument "outputDir" is not a parameter name. [WARNING] * @param outputDir [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdPedShow.java:109: warning: @param argument "chrPos" is not a parameter name. [WARNING] * @param chrPos [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdVcf2Tped.java:179: warning: @param argument "tpedFile" is not a parameter name. [WARNING] * @param tpedFile [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/arrays/StringArrayBase.java:32: warning: @param argument "numElements" is not a parameter name. [WARNING] * @param numElements : Number of elements in the array [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/annotate/mem/database/VariantDatabase.java:230: warning: @param argument "databaseVcfFileName" is not a parameter name. [WARNING] * @param databaseVcfFileName [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:12: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:131: warning: invalid input: '&' [WARNING] * References: "Principles of population genetics", Hartl & Clark, page 58 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/lang/LangFactory.java:99: warning: invalid input: '&' [WARNING] * Create an AST from a program (using ANTLR lexer & parser) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/gwasCatalog/GwasCatalog.java:38: warning: invalid input: '&' [WARNING] * Get all entries at a given chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:96: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/hwe/VcfHwe.java:187: warning: invalid input: '&' [WARNING] * "Principles of population genetics", Hartl & Clark, page 58 (formula 2.5) [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/SnpSiftCmdSort.java:16: warning: invalid input: '&' [WARNING] * Sort VCF file/s by chromosome & position [WARNING] ^ [WARNING] /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/java/org/snpsift/VcfLd.java:12: warning: invalid input: '&' [WARNING] * Reference: "Principles of population genetics (4th edition)" Hartl & Clark, pages 73 to 81 [WARNING] ^ [WARNING] 47 warnings [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12.496 s [INFO] Finished at: 2026-01-08T17:16:55-12:00 [INFO] ------------------------------------------------------------------------ debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/snpsift-5.2.e+dfsg' # Saving some files that are modified during the tests, in order to restore them later. cp test/ann/gnomad_db_multiple_entries.vcf.sidx test/ann/gnomad_db_multiple_entries.vcf.sidx.old cp test/gt_test.01.gt.vcf test/gt_test.01.gt.vcf.old make[1]: Leaving directory '/build/reproducible-path/snpsift-5.2.e+dfsg' dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/snpsift-5.2.e\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian/maven-repo --batch-mode test OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ------------------------< org.snpsift:snpsift >------------------------- [INFO] Building SnpSift 5.2 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact org.apache.maven.plugins:maven-surefire-plugin:jar:2.12.4 has been relocated to org.apache.maven.plugins:maven-surefire-plugin:jar:2.22.3 [WARNING] The POM for org.biojava:biojava-structure:jar:6.x is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details [INFO] [INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ snpsift --- [INFO] skip non existing resourceDirectory /build/reproducible-path/snpsift-5.2.e+dfsg/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ snpsift --- [INFO] Nothing to compile - all classes are up to date. [INFO] [INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ snpsift --- [INFO] skip non existing resourceDirectory /build/reproducible-path/snpsift-5.2.e+dfsg/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ snpsift --- [INFO] Nothing to compile - all classes are up to date. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ snpsift --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.snpsift.tests.unit.TestCasesGeneSets TestCasesGeneSets.test_01(25): Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 s - in org.snpsift.tests.unit.TestCasesGeneSets [INFO] Running org.snpsift.tests.unit.TestCasesVarType TestCasesVarType.test_05_multiple(82): Test TestCasesVarType.test_01_SNP(58): Test TestCasesVarType.test_02_MNP(64): Test TestCasesVarType.test_03_INS(70): Test TestCasesVarType.test_04_DEL(76): Test [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in org.snpsift.tests.unit.TestCasesVarType [INFO] Running org.snpsift.tests.unit.TestCasesDbNsfp TestCasesDbNsfp.test_01(113): Test TestCasesDbNsfp.test_02(138): Test TestCasesDbNsfp.test_03(160): Test TestCasesDbNsfp.test_04(179): Test TestCasesDbNsfp.test_05(200): Test TestCasesDbNsfp.test_06(223): Test [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.858 s - in org.snpsift.tests.unit.TestCasesDbNsfp [INFO] Running org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache TestCasesDbNsfp.test_01(113): Test TestCasesDbNsfp.test_02(138): Test TestCasesDbNsfp.test_03(160): Test TestCasesDbNsfp.test_04(179): Test TestCasesDbNsfp.test_05(200): Test TestCasesDbNsfp.test_06(223): Test [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.697 s - in org.snpsift.tests.unit.TestCasesDbNsfpDeleteCache [INFO] Running org.snpsift.tests.unit.TestCasesHwe [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.snpsift.tests.unit.TestCasesHwe [INFO] Running org.snpsift.tests.unit.TestCasesSort TestCasesSort.test_01(30): Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.snpsift.tests.unit.TestCasesSort [INFO] Running org.snpsift.tests.unit.TestCasesFilterGt TestCasesFilterGt.test_01(28): Test TestCasesFilterGt.test_02(62): Test [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.051 s - in org.snpsift.tests.unit.TestCasesFilterGt [INFO] Running org.snpsift.tests.unit.TestCasesAnnotateMem TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test TestCasesAnnotate.test_02(153): Test TestCasesAnnotate.test_03(161): Test TestCasesAnnotate.test_04(169): Test TestCasesAnnotate.test_05(181): Test TestCasesAnnotate.test_06(192): Test TestCasesAnnotate.test_07(217): Test TestCasesAnnotate.test_08(232): Test TestCasesAnnotate.test_09(245): Test TestCasesAnnotate.test_11(273): Test TestCasesAnnotate.test_12(300): Test TestCasesAnnotate.test_13(320): Test TestCasesAnnotate.test_14(340): Test TestCasesAnnotate.test_15(356): Test TestCasesAnnotate.test_16(372): Test TestCasesAnnotate.test_17(390): Test TestCasesAnnotate.test_18(415): Test TestCasesAnnotate.test_19(428): Test TestCasesAnnotate.test_20(439): Test TestCasesAnnotate.test_21(453): Test TestCasesAnnotate.test_22(479): Test TestCasesAnnotate.test_24(509): Test TestCasesAnnotate.test_25(539): Test TestCasesAnnotate.test_35(693): Test TestCasesAnnotate.test_36(711): Test TestCasesAnnotate.test_38(732): Test TestCasesAnnotate.test_39(743): Test TestCasesAnnotate.test_40(762): Test TestCasesAnnotate.test_41(770): Test TestCasesAnnotate.test_42(781): Test TestCasesAnnotate.test_43(809): Test TestCasesAnnotate.test_44(835): Test TestCasesAnnotate.test_45(861): Test TestCasesAnnotate.test_33_empty_db(665): Test TestCasesAnnotate.test_26_repeat_db_entry(568): Test TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test TestCasesAnnotate.test_28_exists(596): Test TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test [INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.182 s - in org.snpsift.tests.unit.TestCasesAnnotateMem [INFO] Running org.snpsift.tests.unit.TestCasesVariantTypeCounter [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesVariantTypeCounter [INFO] Running org.snpsift.tests.unit.TestCasesExtractFields TestCasesExtractFields.test_31_ann(291): Test TestCasesExtractFields.test_00(71): Test TestCasesExtractFields.test_01(98): Test TestCasesExtractFields.test_02(104): Test TestCasesExtractFields.test_03(110): Test TestCasesExtractFields.test_04(116): Test TestCasesExtractFields.test_05(122): Test TestCasesExtractFields.test_06(128): Test TestCasesExtractFields.test_07(134): Test TestCasesExtractFields.test_08(140): Test TestCasesExtractFields.test_09(146): Test TestCasesExtractFields.test_10(152): Test TestCasesExtractFields.test_11(158): Test TestCasesExtractFields.test_12(164): Test TestCasesExtractFields.test_13(170): Test TestCasesExtractFields.test_14(176): Test TestCasesExtractFields.test_15(182): Test TestCasesExtractFields.test_16(188): Test TestCasesExtractFields.test_17(194): Test TestCasesExtractFields.test_18(200): Test TestCasesExtractFields.test_19(206): Test TestCasesExtractFields.test_20(212): Test TestCasesExtractFields.test_23(218): Test TestCasesExtractFields.test_24(224): Test TestCasesExtractFields.test_25(230): Test TestCasesExtractFields.test_26(236): Test TestCasesExtractFields.test_27(242): Test TestCasesExtractFields.test_28(253): Test TestCasesExtractFields.test_29(262): Test TestCasesExtractFields.test_30(273): Test TestCasesExtractFields.test_31(282): Test TestCasesExtractFields.test_32(300): Test TestCasesExtractFields.test_33(312): Test TestCasesExtractFields.test_34(323): Test TestCasesExtractFields.test_35(340): Test [INFO] Tests run: 35, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 s - in org.snpsift.tests.unit.TestCasesExtractFields [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMixed DataFrame: MIXED, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | GACTC | ATGCTTTTACC | H | null | 1660292060 | true | VGUIHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGLETAEGILYUTDVAIFEOZYGHKA | null | 0.1505474834792303 | FVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPLWOJYB | 1 719 | AA | TTTCATAC | D | null | null | false | null | null | 0.2821982861306481 | null | 2 1667 | GGCGTG | ACG | N | null | null | true | KT | null | 0.6610508916166571 | MFMQTLZADZBNDXVFRJHSDKMELBXLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSR | 3 2408 | GCGG | TGA | X | null | -926287273 | false | ETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXAIMKCTVQNSDPJFZM | null | 0.6053218598587271 | CTXUKSW | 4 2905 | CAGGA | TGTC | C | null | -2110639781 | false | BKSLLDJGZKGHDVQLAAK | null | 0.0987491349432944 | LUYOJPARNUOSX | 5 3569 | TACATC | GGTTA | Y | null | -1619827948 | true | FDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKDDP | null | 0.6958254788801048 | HRUNJEPJ | 6 3942 | AGG | GC | E | null | 1759468634 | true | POXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQ | null | 0.31191986699310315 | GKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKG | 7 4309 | GCGT | TGTGGA | B | null | 1001974229 | false | AMFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQ | null | 0.9430161143370018 | OPXYAVBUFKFXCYZJXGYVI | 8 5266 | CCA | GGCC | G | null | -1921530556 | true | GOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWY | null | 0.4442576436641098 | QAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKI | 9 5514 | TAG | CC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | 10 6338 | AG | CTCG | M | null | -536631031 | false | FHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUC | null | 0.6880295632898734 | SCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJWQVRQ | 11 6556 | GACGG | TCGATA | Y | null | -1809889978 | false | null | null | null | XSRWAOUSCYHUHUBGDWQETIVGKEMLVCL | 12 7530 | GCCTC | TTTA | F | null | 125900821 | false | KFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAE | null | 0.040427108343605966 | WLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZTPWRVHQM | 13 7848 | GCTTTT | TGAA | V | null | 552048597 | false | null | null | 0.2229941719444838 | GIC | 14 8230 | GC | ATC | X | null | -1901567179 | false | AITLYHHFQB | null | 0.9281005456025566 | LOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSNTPANSIG | 15 9168 | CGGG | GTCCG | U | null | -1414511684 | true | TIMJZ | null | null | PMQNUGIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYV | 16 9658 | ACG | TGCCC | H | null | -192898018 | true | null | null | 0.4896099581558816 | WHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOCPKFQIYOKFUCMTYDAXAWLEPFSOPHVFZUEFDEJNVDJVDIURYCMIRNPAQXDX | 17 10210 | CTCT | GCT | I | null | -374215497 | false | QABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGF | null | 0.16071858764042235 | UUXUBSELUPRBRXWHBLPLKJKWNFXJFPCSFTBCOGQ | 18 10777 | AGAA | CAGCT | O | null | 779853740 | false | RJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRAB | null | 0.792349918144592 | XGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFIN | 19 11693 | ACTGCC | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | 20 12285 | TGCACA | CA | V | null | null | true | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | null | 0.6271643404105325 | null | 21 12310 | ACGTGT | CTTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | 22 13067 | GT | AAAACT | null | null | -1111392265 | null | LPNFFRJWMCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOV | null | 0.6293056149475463 | TDQXXMYLARYBPGPAPLSOYBUKFPBAFIBSUFQU | 23 13721 | CCTTC | GGC | I | null | -479647117 | true | null | null | 0.975556283988524 | IANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUUVSTM | 24 14152 | TTCCTC | CCG | P | null | 446527421 | false | IUXDNSLHWUDRUSZUWXBVOU | null | 0.7515769772774136 | null | 25 14934 | GAG | ACCC | L | null | null | false | PVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTM | null | 0.5907961912348977 | JNJFGBQRLQGVCFGVOADMYOHSRX | 26 15751 | TA | CCT | J | null | 1599579110 | true | PLGGEVWJSEISSN | null | 0.4264956752414417 | HK | 27 16453 | GGG | CC | Q | null | 167756937 | false | YPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCS | null | 0.07643741004951432 | | 28 16633 | GG | CTCA | H | null | -1598495659 | true | MJNIGBCJUBZXLDNNXPCVBJPSNJTEHOWCPZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIOBZJSTXAOFYSGHZWIFOJXYYHZGVI | null | 0.37999657635046324 | | 29 17489 | CTG | GACCA | D | null | -1354298566 | true | LCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYW | null | 0.9746654097927338 | PMURZGGYMIELVHMRKLLCGOGZ | 30 17606 | TGTAG | CCACAGAAGC | V | null | 1878366945 | true | TSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQ | null | 0.3397356585960569 | XUCJTEKJBHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMV | 31 18076 | GCT | CTCG | P | null | -1494948578 | false | KXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXN | null | 0.7635122604571503 | ZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIGIACWWMBNSJU | 32 18957 | TGTG | GT | C | null | 1406916527 | true | FHE | null | 0.3484911209670729 | | 33 19938 | ATCT | TGAAC | O | null | 1149795017 | null | NTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXBPTXHXONSYUZUFENSQQWZ | null | null | KRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJ | 34 20585 | TA | GTCA | G | null | null | false | WOAEHZWLSQJATLMHBLMPH | null | 0.9344242335487438 | GCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVS | 35 21560 | GA | TTA | H | null | -205155770 | null | null | null | null | JDWQYQEYTRZGFJYAWMGVKTNMFTZSO | 36 21988 | AA | GGGT | F | null | -1432480630 | true | TILJJSHAQMNRS | null | 0.3133917870266195 | BMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOP | 37 22427 | CCCACG | TTGT | E | null | 860447657 | true | LHWZQAMTRPVRWFEGXRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTC | null | 0.694454522391098 | null | 38 22883 | CGA | TCGTGTTGCA | U | null | -1787101930 | true | YNVOKDHIXALLPU | null | 0.36980056706464903 | DGWDDGQCUCQXBOMEYSHE | 39 23461 | TGTCC | CA | B | null | -1176210216 | false | SRAABIXFMQFNGHXLSOEAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOYV | null | 0.3517610111383015 | null | 40 23891 | GATC | TCG | K | null | -2118220436 | true | TOZFRCDZWFXPYAZDFJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMY | null | 0.6397097529450779 | XXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOERGUMYY | 41 24581 | CGG | TTTT | A | null | 426196393 | false | KUOAQXSZYHTFPESQNYFKQEPAP | null | 0.5332729085977445 | IVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQMAPZOPDSXSKNPUUTRASSVAQLB | 42 24617 | AGAG | GACCT | null | null | -298680206 | false | COPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQXJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUO | null | 0.9217536754688332 | UYRRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYB | 43 25109 | AAT | TCAGT | S | null | -1807342243 | true | PKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOV | null | 0.028187333666930825 | QHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOT | 44 25687 | GA | CGCCCC | R | null | 1025744915 | true | LAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJDP | null | 0.761817576180882 | WOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDK | 45 25708 | TC | GTCTC | null | null | 1837325288 | false | null | null | 0.7695808495019865 | OOINVKQYHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQ | 46 26557 | CC | GAA | Z | null | 1120279121 | false | LTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNR | null | 0.8524057650440213 | null | 47 27162 | GTAG | TCGTT | Z | null | 52752038 | true | BPZBSVD | null | 0.8135675453387192 | KD | 48 27375 | CAA | ACGTT | O | null | 350350448 | false | null | null | 0.03426922763719786 | JAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNC | 49 27499 | AAG | TGCAGT | A | null | 23904471 | false | null | null | 0.555524367802816 | NYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOEXCNXBDIORIOEWPXUPJBBEKPQSARFFXUWDNIYWXADIYLUONTQ | 50 27892 | TT | GGAG | Z | null | 980648983 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.9356403643683727 | DXIFUGVSFLODMYZHIL | 51 28540 | GCCG | AG | D | null | -1499042282 | false | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | null | 0.2701407767298879 | null | 52 29421 | GGTC | AAGGGG | H | null | -1649570894 | true | DFFUUTDDXURSPKSC | null | 0.5873439005542106 | URGROVHDGOLLVMWBULF | 53 30224 | TAT | AGGC | O | null | null | false | null | null | 0.07495722896453205 | VEDGKFHPAFTMIKDCKWPZQGZKFCTREWKRHVHNGEOUBUIDIWX | 54 31106 | GCAA | TA | C | null | -130152109 | true | PXLEGILTKJKBPLEWXUAUUEGQTKNBBOPMKWBRCLYRX | null | 0.8287913220463654 | UDXOHXBODYUAKYGAHTLQELXYTJ | 55 31183 | GGA | CA | Z | null | 2067688714 | true | CKZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVT | null | 0.24977730671660292 | GJOTHKAVFTWIUOIHRTVRUY | 56 31297 | ATTG | TG | R | null | 1742753232 | false | NSIEYGJ | null | 0.7375087780942288 | MUPECSVBKGRQSNGD | 57 31496 | AGGAAT | GT | I | null | 2017697704 | true | FHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGN | null | 0.3831208851383727 | EBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZG | 58 32442 | GCCCG | TAAGTT | A | null | -1205957868 | false | EERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOWLPEKVRDEKAKMMIVCNFXLMUOOKIR | null | 0.8878475241886875 | ZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCIPPPILVEHYJBDBLQWQ | 59 33428 | GG | CCTATG | null | null | 1219143705 | false | NVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPP | null | 0.7441218930581249 | HHGTIVJGFPETBDVJSQBAQBCZIHQFIGJUIQDVGBKHIBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFE | 60 33855 | AGTTTG | GCG | D | null | -2022598863 | false | SRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTAXWNYPFV | null | null | DZLRXCLXTZSXTKYSTMBQGGRL | 61 33915 | ACGC | TACGACCGTGT | H | null | -1128367852 | null | TMPMZPSCZTRZLGJ | null | 0.5491902435953122 | null | 62 34483 | TAGC | CGCGAT | null | null | -1557358100 | true | CYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEI | null | 0.31295892252145074 | CGZALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJK | 63 34709 | CCC | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | 64 35340 | TTC | GGACA | K | null | -166905458 | true | WFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBG | null | 0.8602483882443271 | NPJBGGWENLYYCJTPADCDDQOGHMOVVSZJD | 65 35472 | TGAGGC | GCGAA | E | null | -1631313891 | true | NDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXV | null | 0.12363944563302387 | null | 66 35669 | ATTGA | TCCTCA | C | null | -588298380 | false | IQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJBEA | null | 0.8550234837562305 | VMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLE | 67 35728 | GAACCT | CTTT | H | null | -747544882 | null | IDKXPHFOTFRATSTVGMMNADVITTBCUBYQE | null | 0.7490687548616841 | OMXYIBMPQHOMYJBNEODMVEEFBCTJXH | 68 36183 | AC | CATTA | I | null | -1319632117 | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | 69 36578 | AAAT | GGCAT | R | null | null | false | GDVIDDYSIARMFNRXIDQWTWJFLQPICW | null | 0.43186967699327505 | HYNPLTFNBOQDFQOS | 70 36971 | ACTTG | GG | null | null | 1277958572 | false | DARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZDPHFWRRBUMUSFMSQDSIHADOFZLPCQVYZEBMKVBMFPHNELK | null | 0.4453573989044963 | TPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQD | 71 37618 | TTAG | CAG | B | null | 1037393841 | false | BHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDB | null | 0.39609232226749236 | null | 72 38201 | TAC | ACGTC | D | null | -2079477320 | false | ZGJVDJEEACE | null | 0.07742081110010546 | YUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLLIVKIMHNAJEWWRVWIZSG | 73 38493 | GCCTG | CAGA | H | null | -1463798583 | null | KVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRG | null | 0.9277467500723097 | | 74 38540 | GGA | TATT | J | null | -1689361592 | true | IUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLV | null | 0.8092660381674348 | KTOJGDTUTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSW | 75 39183 | AG | CTTTG | R | null | -1961645317 | false | UHAVSYGXMMWZ | null | 0.7538616470122224 | LYWEJMYHNTTSXXCLCCPJRBGGEOPFR | 76 39799 | GT | AAT | null | null | -110423199 | false | TENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCUOEWSCGDKYTEGYYTNJQB | null | 0.12046287233320274 | IYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJ | 77 40229 | TTGTTT | CCAA | V | null | 1431130355 | false | KLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIUBJHULZAQBBRFRJGAZJ | null | 0.7558427773660447 | BVHLRZZCIVSXZRKBEOERVKNQMYPBSUHNQKRZJLAUPUQUKFCWVILOI | 78 40732 | CTCC | AATGT | G | null | 587644912 | true | LHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEAN | null | 0.4224823862977449 | MDCUYXFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDII | 79 41491 | CACA | ACTGCTTCG | H | null | -554956194 | false | OLXJAFLXULPZGOHHPVYKONTTVCOQ | null | 0.5208315202141268 | LOGWYTQNLEWXWB | 80 41770 | AAAT | CTGATTAGAC | W | null | -985447616 | true | ORFBZWSPFYBDENAEMVIQZBDVRTNVQWSKU | null | 0.7821972190790509 | NRKHLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKN | 81 42042 | AAGCGC | GT | M | null | -1038527991 | true | MSBKHRYXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZRA | null | 0.37288256822247545 | TKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKYANUQQSBHH | 82 42652 | GTG | AC | P | null | 1557281811 | true | SFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHXQZJGMJQZLJFYKYFBXNSV | null | null | DYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFDSSXEVDGHUMRBMPSIPOELOIZ | 83 43313 | GAGAA | ATACTTAGAA | R | null | 978785572 | true | null | null | 0.32522709311038844 | ULOETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAP | 84 43685 | TA | CTGA | S | null | 1153307754 | true | UVXJVCQCBJLYOLUVOCIFUEZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNV | null | 0.17365479912109194 | LFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBU | 85 44141 | ACG | CGCCATT | I | null | -999066038 | false | QVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXIWYNWPONALNRDOU | null | 0.8295755949338437 | null | 86 44779 | CTATA | TGGAGT | R | null | null | false | VNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURGSXFJCAXCGZKZKGXUYPFWXONPKQUQOCSOLG | null | 0.7400197473135066 | YBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFW | 87 45371 | GACTA | CC | K | null | 468567806 | true | RORVMYYKPYAM | null | 0.11273881633613159 | IGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQ | 88 45571 | TAACTC | GCC | F | null | -287500759 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.8056508189855021 | EGYAKQZXEGXNLLREPZFWVCTQTH | 89 46066 | GGCAG | AAA | C | null | -493586842 | true | AHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGT | null | 0.612124337258956 | UNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPI | 90 46985 | TAG | CTTA | W | null | 351786237 | null | XUNGJITKBVEEPVVKXCSIXIBPDCIIEIJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVVK | null | 0.27826706664560996 | AMVZAAQHDHBHFFAYFMRFB | 91 47081 | TACCC | AGAG | E | null | -36353828 | true | KKJO | null | 0.0291007292139015 | TKZUZKDQYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWS | 92 47907 | ATTCA | TCC | A | null | 613424168 | false | FSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMP | null | 0.2190837769941144 | YSMVTAGLUX | 93 48226 | TAGC | GTATTATCGC | Q | null | 1202745151 | false | HMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZVCSKRHFAOHYQERO | null | 0.3656546516594086 | HTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAADWL | 94 48416 | GA | ATTC | B | null | -1923088956 | false | NYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | null | 0.8751078883243962 | YOQUBORWBWITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYREHOBNQZAXRCSAFUCKBVTXSFZIRE | 95 49291 | TCCT | GGG | B | null | null | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | 96 49771 | TGGT | CAC | P | null | -1705231585 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | 0.03359993949940343 | null | 97 50142 | TTCTA | GAAA | R | null | 789177677 | true | null | null | 0.42057612519588505 | NLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZAUQLGKFGNIUNTJWMMJQHSKQBSLLSGOWIMIRRBIEZVEAOMGJ | 98 50305 | GGA | AAGG | G | null | -1078219233 | null | LOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIBFJARVKVELGNMJBSLVSOJJPATNF | null | 0.7680804977882877 | null | 99 50789 | CTCC | TGATA | N | null | -1627198920 | false | JAJASVDEOFQ | null | 0.5578843763975981 | GYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEH | [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.snpsift.tests.unit.TestCasesDataFrameMixed [INFO] Running org.snpsift.tests.unit.TestCasesGwasCatalog TestCasesGwasCatalog.test_01(34): Test WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '19:16185558' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs8109288' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '19:46172277' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs11671664' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '11:116648916' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs964184' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '6:161010117' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs10455872' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '1:67705957' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs11209026' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '19:45412078' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs7412' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos '2:169763147' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry RS number 'rs560887' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: GwasCatalog entry chr:pos ':-1' already exists WARNING_DUPLICATE_PRIMARY_KEY: Too many 'WARNING_DUPLICATE_PRIMARY_KEY' warnings, no further warnings will be shown. TestCasesGwasCatalog.test_02(50): Test [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.704 s - in org.snpsift.tests.unit.TestCasesGwasCatalog [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameIns DataFrame: INS, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | | GACTC | W | null | 392236186 | false | FFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUV | null | 0.36878291341130565 | ZVMGTYMKSHHVG | 1 1113 | | CAG | Y | null | 1248616208 | true | EGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQ | null | 0.805730942661998 | IHFQWUSYUOXQVRXNTLWTQRTLGZHNXJGL | 2 2034 | | TGA | H | null | 2096791762 | false | UVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOET | null | 0.20057805982204702 | XLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKT | 3 2775 | | TCTGG | R | null | 416003605 | false | CTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBK | null | 0.20222269912693658 | QDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGCXHAYYLXA | 4 3709 | | GTT | A | null | -2030386360 | false | NJEPJICSFDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKD | null | 0.9001801157494951 | DCZNFMRXEWAMVAFWWRYGGOTPRS | 5 4212 | | AAAGGT | N | null | -343155651 | true | IKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZR | null | 0.1015136969559961 | RDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQ | 6 4241 | | CGT | W | null | -1117389689 | true | null | null | 0.6213511710359201 | LBJTOPXYAVBUFKFXCYZJXGYVICKOAMFVVWSPTNCGQIEMXRMHTEIGR | 7 4605 | | TCTCG | G | null | -1170372084 | false | TZPNIWMONL | null | 0.47810166001754617 | TUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPO | 8 4989 | | AAAT | B | null | 1856078580 | false | XNMTUYJPZYRUZCWFGZVEUUGMRBHYLGVDHQHETXOLCKQWDSOOPYFTKEUSOFRMKCHTCDASCZBWYYWFGVFTKARFUSEWVKGO | null | 0.357239736902605 | YMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVUDHD | 9 5739 | | AGAAT | X | null | 82125448 | true | QIYBBUBAZLCDFWYENCGBPHXSRWAOUSCYHUHUBGDWQETIVGKEMLV | null | 0.5895111591883899 | LZVCADPXDFSLLACZQMHEWEYJWJWQVRQKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSW | 10 6339 | | AGTT | I | null | 1487791715 | false | ZWLITSIB | null | 0.4546689517646505 | QHTZFSFVYK | 11 6409 | | CA | S | null | 1763965218 | true | XLOBWQRTANIBWUKCXIEUXXTAZJ | null | 0.007031523778798898 | FIYNIVADIWAXPTXTVODSUOZTPWRVHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZG | 12 7233 | | ATGCT | Q | null | -1705138200 | false | ZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKKGFWKBYZYNSN | null | 0.7645424751954817 | AEJFNLPAVTXNBSMPGICZGSAAKUXYRDHISDKIKEXJRDMJIBLOBLSKDWFONVIKAEYDXPO | 13 7870 | | GCCT | H | null | 353184724 | false | | null | 0.2791777177971343 | ATIARJNANENEUPMRUWTMUTOOPMQNUGIHZTBJTLIFFBHNWHX | 14 8682 | | GTA | Y | null | 411614493 | null | YXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHOC | null | 0.982808162985235 | KN | 15 9587 | | TAGC | A | null | -152282141 | true | ZUEFDEJNV | null | 0.8385493805073976 | SOP | 16 10532 | | AA | P | null | -1558269714 | true | WHBLPLKJKWNFXJF | null | 0.28736669172469376 | OXPYASMSHLSHBDGHYGPIRBDKXCPUUXUBSELUPR | 17 11463 | | TATCAA | W | null | -384510011 | false | NNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOV | null | 0.6371545550232023 | HKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQ | 18 11520 | | AAGCAT | P | null | 2074911081 | true | HUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBL | null | 0.6872285243865529 | INZHSRJSFVGSMSRVAWKXGXIITFR | 19 12303 | | TCAA | K | null | 1170265868 | true | QYRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJSAMYSFHFDOWTMCRLMYTTAVQ | null | 0.8333157560452243 | null | 20 12973 | | GCCG | D | null | 115966875 | true | GPCRPYIKDMFUPNFRTNVP | null | 0.8139963787551981 | ZLOHQRTHZUBYWZORERPCZFUSOSSEKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEF | 21 13953 | | CC | Y | null | 859044042 | false | OCPCAQQYHVYMSZDYZLGDMWLBJJADJNZBAVOBMTNXMJZATPEZATDQXXMYLARYBPGPAPLSOYB | null | null | XXWSJZQXNQOQTVATSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQR | 22 14607 | | AGGTAC | L | null | 941788784 | false | XDPIKBKIANCKLACLYINUQMDKFXDI | null | 0.6624030276873565 | MCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJ | 23 14825 | | TACGC | R | null | -2074325123 | true | TMUPXGOVUIDXQKLPRET | null | 0.018681289917958255 | WXBHOJWCYZUUUVSTMVQTOL | 24 15691 | | ACA | W | null | 252862157 | true | RXWUDPVRSRMKLUCGTCFRDYIDIJFXVPQAKHPQEWWNHVSQLOTMXOVRAGOTTXTCDDIX | null | 0.8168426301088789 | WXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGVOADMY | 25 16531 | | CT | X | null | 1665655642 | false | GNGFXOY | null | null | VWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPN | 26 17527 | | CCCGAG | F | null | null | true | TUTUSRRDMJNIGBCJUBZXLDNN | null | 0.5822841538996832 | YLCD | 27 17938 | | TTA | W | null | -1600039699 | true | null | null | 0.32403626900832316 | WDHOYTRBOKNAZOGGLAHUDG | 28 18033 | | ATCAT | A | null | 1645484388 | false | FFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPBUDSQGLOBMZVVFLNSWMQXUCJTEKJBHRBK | null | 0.209445808007097 | WIFOJXYYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELVHMRKLLCG | 29 18069 | | AAGTGG | null | null | 641853241 | false | GXUEAFPGVRPBB | null | 0.9492585897886805 | MMVQSQTSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEB | 30 18925 | | ATGAGA | G | null | -1415227265 | true | UXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRPSISCUD | null | 0.5796633000167881 | MMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQ | 31 19488 | | CCA | H | null | -943628690 | false | NEDJSAMHXJDPHXFJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXB | null | 0.3113658731648862 | DVXAMQMWWROUPEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYV | 32 19537 | | AGGCGA | Q | null | 1251603443 | false | null | null | 0.5257286882896216 | GPCOYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLI | 33 19780 | | GGA | null | null | null | true | UXJCGASKRFLVSUERWOAEHZWLSQJATLMHBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZ | null | 0.2230352688593391 | null | 34 20604 | | AAT | L | null | 356208355 | false | null | null | 0.5020444853612951 | MXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNN | 35 20862 | | ACT | T | null | -660348769 | true | XRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIU | null | 0.34360523073670424 | QMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZQAMTRPVRW | 36 20881 | | GTCCT | Q | null | 1228241393 | true | CUCQXBOMEYSHEELIYNVOKDHIXALLPUSA | null | null | MCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHWPTPDSDLDEGQHTUUHBYSKXKDGWD | 37 20979 | | TCC | F | null | -1865060559 | false | EAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOY | null | null | UVDIAXJXSRAABIXFMQFNGHX | 38 21774 | | AG | I | null | 1214916171 | true | null | null | 0.14525940093796808 | KMIVESHZXXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOER | 39 22146 | | ATCT | F | null | -33582533 | false | CHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKC | null | 0.7079952995511792 | JJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUY | 40 22171 | | TCGT | K | null | -1463321969 | true | null | null | 0.7829445841041348 | null | 41 22799 | | TCG | N | null | -1055384584 | true | PSQQOQTKLV | null | 0.06566831133672113 | SVAQLBASZKUOAQXSZYHTFPESQNYFKQ | 42 23368 | | ACGCTG | W | null | 731584253 | true | XJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUOIJTCPZTXKZAMMIUSG | null | 0.048538059777159304 | RRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMY | 43 23897 | | GC | Q | null | 1411429955 | true | JUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLR | null | 0.7530274401586365 | HJFIMPPDVZXFSSIZVMSEVENLFRCLO | 44 24368 | | GGGCGC | T | null | 1231169964 | false | XSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJ | null | 0.23882485221390193 | AXHWOPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDKTYCLAZVIC | 45 24399 | | GATCTC | A | null | 2006361315 | true | VOVQ | null | 0.33097788987005283 | BQXLOOINVKQYHMPA | 46 24971 | | GAT | null | null | 1172063121 | null | SUDFREILZDQY | null | 0.393494187985291 | G | 47 25760 | | TCCTGC | Z | null | -352846139 | true | LNSWYQIJLEMSYPRLUMZYSM | null | 0.8566224034706998 | PFDMLTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWR | 48 26121 | | TGTTT | J | null | null | true | SKNTNRRWSWPOQJYEQWTHBQXHRKWBEPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDC | null | 0.10357285179981146 | null | 49 26452 | | CCG | K | null | -1807694237 | false | FNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVP | null | 0.3354411676849467 | C | 50 26526 | | CGG | W | null | -72850326 | false | YHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTV | null | 0.7967442732591338 | EKPQSARFFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSFLFTPMDXIFUGVSFLODMYZHIL | 51 27174 | | GCCG | W | null | null | true | UEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNONXNRMRDSFQOYVQPTTMGBOOHSFOWUIJURGROVHDGOLLV | null | 0.6066375620808753 | ZRIJLEGPLJGZK | 52 27844 | | ATA | T | null | 1372927724 | true | PZLVEDGKFHPAFTMIKDCKW | null | 0.21487970910288356 | KSCNVRUEZJVGIUWTXHUDCOQ | 53 27861 | | AG | R | null | 1390363635 | false | IDIWXCNWIISITBTVMNPAYTHIPNCKCARBOCHEUDXOHXBO | null | 0.11814515756399246 | | 54 28452 | | CTATTT | J | null | 1766551354 | false | JKBPLEWXUAUU | null | 0.2813757556627646 | GI | 55 29004 | | CGT | R | null | 1223664887 | true | KZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZTOJMMUPECSV | null | 0.24077856032548373 | BQJIXFRTNVCQIBZZQJAARJSGJOTHKAVFTWIUOIHRTVRUYF | 56 29577 | | TT | null | null | -1150139141 | false | HXADISRKTIKXY | null | 0.2091512021346421 | VFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZGOEXFH | 57 30447 | | CCCA | E | null | 1869461585 | false | YEASQAPHIVZCCVYKLUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNB | null | 0.5355040682130194 | HDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMB | 58 31106 | | GGTAA | L | null | -1508617016 | false | KVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPETBDVJSQBAQBCZIHQFIG | null | 0.07320212412633109 | BLQWQTZGEERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOW | 59 31573 | | CTGCGC | Q | null | 1571851493 | false | HDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRLEXDSRBZJGXWOWHUPII | null | 0.4386539601851286 | EEGLMSAWQTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPH | 60 31615 | | TAGGT | N | null | -2016612795 | false | NSROCBCLTAXWNYPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQDLSFTTMPMZPSCZTRZLGJQQUKIIAPGAD | null | 0.1310981753882957 | DKOMRLKHNSPEVN | 61 31948 | | TGCG | null | null | 1344148300 | true | KAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPB | null | 0.5842806130061003 | ALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLFHEH | 62 32257 | | AGGA | J | null | -835675181 | true | JCLUBGMVFISLNJIC | null | 0.9602366045493509 | VLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZ | 63 32888 | | TTC | P | null | -1774917499 | false | EVABQVGYCHUOTAEUPCXSMJBZNDQIYDBVMBDDWTLHTNDQJWCWVCQRXQVDNPNI | null | 0.47228181628336274 | OBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCDAWFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEP | 64 33812 | | CGC | W | null | 901085161 | true | JJKHDMASERCYWA | null | 0.4163303952758649 | ZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOFRZAWQCTHQNXHDVMXZWXANQSZ | 65 34662 | | ACGG | Y | null | -938444986 | true | BFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLEYB | null | 0.9407833954772991 | null | 66 35254 | | TCGA | C | null | -1971349990 | false | BNEVBDRXIXKVQHAMWTPLWPN | null | 0.6169287820253964 | ZOISZGQEGO | 67 35973 | | AGTCA | R | null | -1785568496 | true | TFRATSTVGMMNADVITTBCUBYQEBQREDVK | null | 0.46702535450962157 | FAHKHSJBEALCXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXHBDBIDKXP | 68 36029 | | TAA | I | null | null | false | CTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRL | null | 0.4413689991083415 | EUXCUGFHDUYGCNDAMPRDV | 69 36424 | | AAAT | null | null | 731496163 | true | IARM | null | 0.24726460602879008 | HBLGOAIHYNPLTFNBOQDFQOSGIMGDVID | 70 36697 | | TGC | P | null | -1784374440 | false | ULBRVHWTPPXLD | null | 0.9767443437342928 | WYRVDDYVZKYHE | 71 36781 | | TTTCT | W | null | -626578806 | null | NAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCR | null | 0.5825804546132891 | XIOZZRBJJIUCGRJFDBUXNZ | 72 37733 | | GCCTTC | E | null | 74119738 | true | EZDPHF | null | 0.2393563548507074 | null | 73 38525 | | TACAT | A | null | -493531815 | false | JVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMV | null | 0.9468290018256974 | QVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDBT | 74 39493 | | TG | I | null | -1080358974 | false | AHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGA | null | 0.07293217555193243 | WRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNG | 75 40464 | | TC | B | null | -1895266390 | true | DMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLVFIECDHCJEXBP | null | 0.02613012878314258 | UTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABS | 76 41209 | | GTTTGT | L | null | 1351870056 | true | null | null | 0.5198764636109314 | NTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKLGQIGRWFRRQPOKVFNLU | 77 42149 | | CT | X | null | null | false | SCGDKYTEGYYTNJQBYHCWLKKNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOER | null | 0.7721649771204521 | BZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCU | 78 42284 | | ATGTA | J | null | -597273619 | null | ULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZXHGROHWPSYMDCUYXFUMVUZPPY | null | 0.12562854211500862 | QUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIU | 79 43116 | | GTCCG | H | null | -1183505179 | true | HEFPDIISRJLHXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEANBDLHYXXFKJMJVZNNVT | null | 0.6498267424172269 | KBIKE | 80 44066 | | TA | X | null | -123349300 | true | null | null | 0.14198551661486014 | GWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCHQQLSV | 81 44869 | | TGT | N | null | -935455867 | false | DENAEMVIQ | null | 0.8050034418999328 | HLCUIXZZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKNBHTORFBZWSP | 82 45374 | | CATAGT | Y | null | 128319085 | true | QQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAH | null | 0.944310006681651 | RLFULNBVZYMWMCWSNATKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKSBPMDLKY | 83 45794 | | GCC | D | null | -103662317 | true | E | null | 0.6836398150836674 | QMSSRMHZWJVVUOMBPVLGTNWXG | 84 46251 | | AGT | I | null | null | false | IUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCNFD | null | 0.12377768791440902 | PGGYYEALDQDPRHSPDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWEI | 85 46963 | | TCTTGC | I | null | 1786679007 | true | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | null | ALCSFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | 86 47125 | | GTTTC | N | null | -1587699739 | true | QCBJLYOLUVOCIFUEZZGW | null | 0.6283732696129124 | DRXZBYFDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVX | 87 47839 | | AA | null | null | -1042917316 | true | FFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAVYBXSVREX | null | 0.5413399443121274 | LJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVL | 88 48232 | | AAAT | F | null | -887604636 | null | KXJIAKLYIUGICL | null | 0.6177093967642714 | CYFWSDUVNNDFUBOGYSZGEJGR | 89 49227 | | AT | Z | null | -471111821 | true | null | null | 0.9656868712398303 | PFWXONPKQU | 90 49693 | | GGTG | A | null | 1044117360 | false | XGQLGWRORVMYYKPYAMAZCXGYJCALSCGAZOEWAOGVKFINKYIWQEGYAKQZXEGXNLLREPZFWVCTQTHORMW | null | 0.07708649570475923 | TKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVT | 91 50459 | | CCTAA | A | null | -1370440665 | false | AXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFX | null | null | IUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEEPCH | 92 50481 | | GCG | R | null | 2066697767 | false | MWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCA | null | 0.872347902538948 | CSZJSNBGPIFIBAHZYTPMRBM | 93 50858 | | CAT | H | null | -587101376 | false | MYCFSVUZWZMVVVAMVZAAQHDHBHFFAYFMRFBHJSXUNGJIT | null | 0.7620400986238222 | LYNCQJNXKGTZFGXFMSS | 94 50860 | | CAGCA | I | null | 1098547523 | true | ESMQRCAXYFQXI | null | null | IJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVV | 95 51603 | | TTAAT | G | null | 1908010737 | true | MVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMPTPSDIRXOPHWHAEEWOYVMXSL | null | 0.43238451506653686 | QYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELON | 96 51648 | | CCATGC | N | null | -1749037701 | false | SVJIAGBAADWLGGNHMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMHOMCUHBNTWZFLRLFXDZV | null | 0.24978790296557885 | RSJAEXCVDZTHLX | 97 51910 | | TGGAT | F | null | 895867645 | true | EASCDWYPBMUTRLSEYOQUBORWBWITTSCTVWERU | null | 0.41222705817949823 | null | 98 52327 | | ATCAGG | K | null | null | false | UBYREHOBNQZAXRCSAFUCKBVTXSFZIREOPSNYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJKZFB | null | 0.5758661835439116 | JHJMNUZVVGBGRNL | 99 52862 | | TCGGGA | I | null | -1934920832 | false | OHYE | null | 0.6240226122495972 | UIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFG | [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.snpsift.tests.unit.TestCasesDataFrameIns [INFO] Running org.snpsift.tests.unit.TestCasesVariantDatabase 1 1000 . A T . . ZZZ_FIELD_FLOAT=3.14;ZZZ_FIELD_STRING=Value1;ZZZ_FIELD_FLAG=false;ZZZ_FIELD_INT=123 [ZZZ_FIELD_FLOAT, ZZZ_FIELD_FLAG, ZZZ_FIELD_INT, ZZZ_FIELD_STRING] [FIELD_FLOAT, FIELD_STRING, FIELD_FLAG, FIELD_INT] [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.snpsift.tests.unit.TestCasesVariantDatabase [INFO] Running org.snpsift.tests.unit.TestCasesGt TestCasesGt.test_01(25): Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 s - in org.snpsift.tests.unit.TestCasesGt [INFO] Running org.snpsift.tests.unit.TestCasesPrivate TestCasesPrivate.test_01(48): Test TestCasesPrivate.test_02(59): Test TestCasesPrivate.test_03(70): Test TestCasesPrivate.test_04(81): Test TestCasesPrivate.test_05(89): Test TestCasesPrivate.test_06(95): Test TestCasesPrivate.test_07(101): Test TestCasesPrivate.test_08(107): Test [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.snpsift.tests.unit.TestCasesPrivate [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameDel DataFrame: DEL, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | GACT | | G | null | -1436456258 | true | ZVMGTYMKSHHVG | null | null | | 1 223 | CTGG | | X | null | null | false | NNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPLWOJYBWQKVGU | null | null | PXBTJGJYGUPJF | 2 545 | GTCG | | null | null | -1976073951 | false | QTLZADZBNDXVFRJHSDKMELBXLUSSYJ | null | 0.6940557826497827 | TLGZHNXJGLETAEGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYE | 3 1055 | AATGG | | E | null | -1010079021 | true | BOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWOVIJFGCPTTGMGC | null | 0.8502834502384514 | FDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKTJLEUVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOETZU | 4 1446 | C | | T | null | 1403132403 | true | AUODCZNFMRXEWAMVAFWWRYGGOTPRSHRUNJEPJICSFDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXP | null | 0.39316353033715945 | FZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBKSLLDJGZKGHDVQLAA | 5 1881 | TTGA | | T | null | null | false | TEPZKMCQAQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZRFKJCJOARSXBEQN | null | 0.13527063443116194 | RNHENWGVSRDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVODCKIZGLHJCVW | 6 2563 | T | | T | null | null | false | UKJLUZTUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPOGDMTZPNIWMONL | null | 0.6240261637520885 | UFKFXCYZJXGYVICKOAMFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFB | 7 2947 | AAA | | B | null | 114930024 | false | FKUXNMTUYJPZYRUZCWFGZVEUUGMRBHYLGVDHQHETXOLCK | null | 0.07793307836710994 | EYMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVU | 8 3347 | GTCT | | F | null | 845126422 | false | HEWEYJWJWQVRQKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJ | null | 0.6161471556789055 | DASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLAC | 9 3983 | CTTCA | | Q | null | 468178437 | false | WQETIVGKEMLVCLMYKFYMDAGCGBDIDZEEHKQQHTZFSFVYKAZIZWLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIV | null | 0.04108960045004717 | ZLCDFWYENCGBPHXSRWAOUSCYHUHU | 10 4433 | GTAT | | O | null | 1130020054 | true | RYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNAEJFNLPAVTXNBSMPGICZ | null | 0.6382849215814441 | QMFXCKFYTNWGKENKRJLZXOP | 11 4689 | TGC | | K | null | -445790332 | false | KBYZYNSNTPANSIGHYIAITLYHHFQBGATATIARJNANENEUPMRUWTMUTOOPMQNU | null | 0.7382253789492977 | MJIBLOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVIBKK | 12 5001 | GGG | | B | null | -1313067818 | true | RREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNXIQFM | null | null | GYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYVCLDTIMJZUEMQPCYGQY | 13 5198 | GGGTA | | Y | null | -1251908859 | false | SMSHLSHBDGHYGPIRBDKXCPUUXUBSELUPRBRXWHBLPLKJKWNFXJFPCSFT | null | 0.9167833442482675 | PFSOPHVFZUEFDEJNVDJVDIURYCMIRNPAQXDXXUOX | 14 6041 | AT | | I | null | -6330919 | true | XGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQCNFNNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOVNOHLLTOINN | null | 0.3800326067140799 | KOXRNGJ | 15 6581 | GGGG | | F | null | null | false | EDKUZSKCFJZPOWKBQYRYSGVHXBWNYGWXWV | null | 0.06012241070042468 | SFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRA | 16 6936 | TTA | | A | null | 511856758 | false | YTWLRZOEZULNPISA | null | 0.896994305092103 | | 17 7804 | GAACG | | F | null | -1272606888 | true | USOSSEKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEFFMC | null | 0.7560910517289061 | CRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERP | 18 8572 | TGG | | null | null | null | true | SNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQS | null | null | VPWIOXYXTHTYNYBDMMZVHXXWSJZQXNQOQTVATSQRUUCAK | 19 8788 | AACGT | | O | null | 74880996 | false | MWLBJJADJNZBAVOBMTNXMJZATPEZATDQXXMYLARYBPGPAPLSOYBUKFPBAFIBSUFQU | null | 0.07910641251928785 | QREDBOCPCAQQYHVYMSZDYZ | 20 9670 | TC | | U | null | -1276786925 | true | QO | null | 0.6263524583490568 | HZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJKJIXDPIKBKIANCKLACLYINUQMDKFXDI | 21 9827 | G | | R | null | null | true | TMUPXGOVUIDXQKLPRET | null | 0.018681289917958255 | WXBHOJWCYZUUUVSTMVQTOL | 22 10693 | AC | | L | null | null | false | GVCFGVOADMYOHSRXWUDPVRSRMKLUCGTCFRDYIDIJFXVP | null | 0.6111167283426931 | ZUWXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQ | 23 11663 | C | | S | null | -31088424 | true | VWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPN | null | 0.7531929524822482 | VRAGOTTXTCDDIXWJJSJYHEWHKXIGPL | 24 12601 | GGCC | | Z | null | null | false | XPCVBJPSNJTEHOWCPZLVRQWDHOY | null | 0.31339935880017655 | YJGTFPZIVULMYLCDHDSTUTUSRRDMJNIGBCJUBZXL | 25 13072 | AAC | | U | null | 1330843747 | true | GYMIELVHMRKLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPBUDSQGLOBMZVVFLNSWMQXUCJ | null | 0.4692113581027457 | NLRITIOBZJSTXAOFYSGHZWIFOJXYYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMU | 26 13867 | GCC | | G | null | null | false | XP | null | 0.22199844675396851 | NZQEAQKWLSYJMMVQSQTSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTF | 27 13962 | GAG | | L | null | 146571832 | null | MOPIMPXRLKAIE | null | 0.510346538643695 | FPGVRPBBCUZUTIRNMBZQIBPCTGQWJECWFMMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOIT | 28 14288 | GTC | | H | null | 1548333524 | false | UXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRPSISCUD | null | 0.07446599626789219 | NSDERCMAIXBNIQRIEMDHOQFQ | 29 14851 | CC | | null | null | -1696167297 | null | HXJDPHXFJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHA | null | 0.0799845503474157 | WIMEDVXAMQMWWROUPEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJ | 30 14999 | TGTTC | | Y | null | -522360497 | false | TLMHBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZSOSWWVMRPXNYNXLQTNZOAMMXFPMGJWHVBMIISK | null | 0.5344552293903443 | QQWZBPWGGGPCOYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVSUERWOAEHZWLS | 31 15537 | GACGA | | S | null | -578434703 | false | OMZVWXWMONE | null | 0.8251475537214046 | BGIV | 32 15731 | ATAC | | null | null | 400671947 | null | HTILJJSHAQMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZQAMTRPVRWF | null | 0.5579494955102167 | YIKDTO | 33 15777 | GCT | | M | null | -319681430 | false | DSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXBOMEYSHEELIYNVOKDHIXALLPUSAKUWJOTDSNJKSFBXNRJBTUVDIAXJ | null | 0.3831246943809442 | BFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHW | 34 16236 | AACCC | | L | null | -1117096939 | true | COUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOERGUMY | null | 0.17249805940518959 | RSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXRGCNLDFIXNZUPCZBSDO | 35 16372 | C | | W | null | 1179462312 | true | EZAYOPAVIWWDSBKGVIERZVVKW | null | 0.985450039923121 | FJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUYTHQCHTPHGWMYYPIWPAHZMSNEIIVXNKHDI | 36 17216 | G | | N | null | -1055384584 | true | PSQQOQTKLV | null | 0.06566831133672113 | SVAQLBASZKUOAQXSZYHTFPESQNYFKQ | 37 17785 | ACGCT | | null | null | -298680206 | false | COPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQXJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUO | null | 0.9217536754688332 | UYRRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDKCZJYFXCWGKYB | 38 18277 | AA | | I | null | -863116862 | true | null | null | 0.5623763340669743 | JDTKELPQHQDIEBEXBHJFIMPP | 39 18468 | AT | | N | null | 1924436227 | true | WCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLRHFHNQ | null | 0.1749105387303984 | VRJUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKE | 40 18910 | CCCCG | | Q | null | -2031335518 | false | LAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJDP | null | 0.11273244680001182 | OPEORODIVFVMHWOXPGIWSRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKYLGDK | 41 18931 | T | | W | null | 1899206506 | false | VGKGUNPFZAZQHYKIPFDMLTTAXEEGFQ | null | 0.4671423995923216 | RUGBQXLOOINVKQYHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCL | 42 19089 | CC | | R | null | 1118819099 | false | DQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKKYEXOXXC | null | 0.4478386559636307 | LWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNRRWSWPOQJYEQWTHBQXHRKWBEPZCHIAW | 43 19894 | CCCTA | | N | null | -605014644 | false | null | null | 0.7303047459316435 | BPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOEXCNXBDIORIOEWPXUPJBBEKPQSARFFXUWDNIYWXAD | 44 20045 | ACGA | | C | null | null | false | WALBHBZSDNPAZQNUZCBTVECALPBVRYGCTNGWNEHDQFNZRIJLEGPLJGZK | null | 0.8179955180515363 | INSSHZSFLFTPMDXIFUGVSFLODMYZHILGJSYHWBHIFILQDCHDCFNPVQXTQLDDLRNNWGPVDM | 45 20405 | CCTT | | Y | null | -1514625439 | true | JURGROVHDGOLLVMWBULFCGKDFFUUTDDXURSPKSCNVRUE | null | null | DVQTYZFJUUCLNKWXYBNONXNRMRDSFQOYVQPTTMGBOOHSFO | 46 20912 | GGCA | | O | null | 1616307207 | false | null | null | null | VEDGKFHPAFTMIKDCKWPZQGZKFCTREWKRHVHNGEOUBUIDIWX | 47 21794 | GCA | | T | null | -1227593025 | false | HTLQ | null | 0.2772271069547678 | ARBOCHEUDXOHXBODYUAK | 48 22268 | CGAGT | | T | null | -284068841 | true | AVFTWIUOIHRTVRUYFU | null | 0.31929058625899376 | WXUAUUEGQTKNBBOPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJO | 49 23112 | GAAT | | K | null | null | false | MMUPECSVBKGRQSNGDQGTNSIEYGJHVFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBR | null | null | OSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZ | 50 24097 | ATAGC | | I | null | -598926481 | true | VEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMBTCCYEASQAPHIVZCCVYKLU | null | 0.21927388862578912 | KLNHGVIVMCRZGOEXFHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGH | 51 25083 | AC | | G | null | -293064464 | false | QDTZPZQRZIACBFBDNFDLHOOWLPEKVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCY | null | 0.747238647577231 | UZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCIPPPILVEHYJBDBLQWQTZGEERZXKCHCR | 52 25744 | CG | | E | null | -1360501385 | false | WKGGQCSTRTLHEEGLMSAWQ | null | 0.024172844226171386 | BAQBCZIHQFIGJUIQDVGBKH | 53 26411 | G | | F | null | -1304874868 | false | BLDDWEOFLBRGUYZKDJNGXPPHVJBHDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRL | null | 0.6860774121795407 | ASDAKTYBU | 54 27081 | A | | W | null | -1161853101 | true | ZPSCZTRZLGJQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIE | null | 0.21385656542785914 | KVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTAXWNYPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQDLSFTT | 55 27218 | CT | | O | null | -1894851746 | false | NHSZRCNCFBCWIZCNXGDEIMCPBZSBYHGCJJCHZAJAJHIZFPZJVLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJU | null | 0.6536096755688723 | KVJRPQASSROBWVZDJKOCRCYMTXUBTD | 56 27282 | AGATT | | F | null | 884228440 | true | OBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEPQAOEVABQVGYCHUOTAEUPCXSM | null | 0.2686316223942542 | NTQKOCGCXSKCEDPKOLOTGKOBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCDAW | 57 27641 | GGGGA | | T | null | 1676893454 | true | ZZIIIHFMWTOZMHCMXPF | null | 0.8439224234714445 | WCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDX | 58 28077 | CGTG | | D | null | -1203020043 | false | AQJJKHDMASERCYWAWE | null | 0.710936431698637 | NQ | 59 29035 | G | | Q | null | -609488607 | true | DSDUABTFOWDJHCNWEFLH | null | 0.911924838137379 | RQGBFWBJNIIFD | 60 29911 | CT | | L | null | -2089153437 | false | GOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJBEALCXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIB | null | null | YAOLFVXWCCSCLZTPSWEZOISZ | 61 30667 | CTT | | V | null | -1973450833 | true | null | null | 0.9012258507873285 | XHBDBIDKXPHFOTFRATSTVGMMNADVITT | 62 31223 | AA | | K | null | -1755477375 | false | XKFCDSZTVBKMHRHBLGOAIHYNPLTFNBOQDFQOSGIMGDVIDDYSIARM | null | null | SWRGIDIFQAFZGNEUXCUGFHDUYGCNDAMPRDVDPCCTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRLBEQPW | 63 31496 | TG | | Q | null | 1180677504 | false | XNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZDPH | null | 0.984760373484259 | PWYRVDDYVZKYHEGNPULBRVHWTPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJF | 64 32187 | ATA | | S | null | -724345447 | true | BMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHU | null | 0.8850906678117744 | LPCQVYZEB | 65 32391 | C | | L | null | -875561924 | true | UODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLL | null | 0.3715021908115971 | | 66 32515 | GTAG | | I | null | -375267285 | false | OKWRVKHVYQCQKXUPYHKVOPSCJY | null | 0.5900730230722597 | GJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCKV | 67 32590 | G | | Y | null | 1514413576 | true | EVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANBMVAX | null | 0.7341836835763552 | IJKMWIEKPDQQBBTBRGBKZFM | 68 32667 | G | | T | null | 797572977 | false | PSXDXCZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJN | null | 0.5332105043498733 | null | 69 32820 | A | | E | null | -415835914 | false | TNNUGGNQRCFGCLCZLYWEJMYHNTTSXXCLCCPJRBGGEOPFR | null | 0.1335174125223052 | VFIECDHCJEX | 70 33205 | A | | M | null | 520142376 | true | KTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCUOEWS | null | 0.43211074741851097 | GQIGRWFRRQPOKVFNLUBIYFBAUNPDVYD | 71 34069 | GGTC | | Q | null | 1433331585 | true | YPBSUHNQKRZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJA | null | null | KNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOERVK | 72 34819 | CG | | Q | null | -739082506 | true | null | null | null | IUBJHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVST | 73 34912 | T | | D | null | -1883492175 | true | HXNORWCADYZZKOKNDIJQWVENOKRPELATYNBXBIXFN | null | 0.653882331978058 | VUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDIIS | 74 35777 | TA | | D | null | -502617652 | true | NTTVCOQNLCWSMQUCHQQLSVPYLUIDGCGAOOIWYYNIQHONRK | null | 0.8711203219921168 | PCPEANBDLHYXXFKJMJVZNNVTYOGCLPAAEWFHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPV | 75 36380 | ATTAC | | T | null | 1571795832 | false | ZC | null | null | DEOMBEYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJ | 76 36754 | TC | | R | null | 1758196166 | true | TYHRYIKSBPMDLKYANUQQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWF | null | 0.6417540860653896 | YBDENAEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQ | 77 37602 | C | | V | null | 298122992 | true | WXGFKDELXIPNUBIQSXJ | null | null | L | 78 38525 | AAGAA | | L | null | -1359626233 | true | ELTXVWYOGYCNFDSSXEVDGHUMRBM | null | 0.40993593188707933 | PDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUXBMYTCTJJQZLBEIWX | 79 39068 | A | | C | null | 313119412 | null | MIINDEAFXIIBLWZYUZUWYXQZREBEHXQZJGMJQZLJFYKYFBXNS | null | 0.8811611289359326 | CUYVGZRUCWQPBGBNWRLKDJ | 80 39391 | TG | | P | null | 387521435 | true | YHDULOETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAPDDYSLBHDYOEYF | null | null | JNTHMLQTYJURK | 81 39810 | ACA | | C | null | 1317623748 | false | DQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXI | null | 0.027280066900205235 | VNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVXJVCQCBJLYOLUVOCIFUEZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNVOZY | 82 40464 | CTA | | U | null | 1991019784 | false | SXFJCAXCGZKZKGXUYPFWXONPKQUQOCSOLGKFDASKPMDBASJYUSZRTKHCHMKEYI | null | 0.5232752681520697 | FSHJFAUVMFOZYUDRXIVXGAVYBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFWSDUVNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLV | 83 41358 | G | | O | null | -2110428431 | false | CGAZOEWAOGVKFINKYIWQ | null | 0.03010634590247585 | TZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQLGWRORVMYYKPYAMAZCXGYJC | 84 41616 | TGCC | | E | null | 653352657 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.08956523678408113 | QTH | 85 42111 | GGCA | | C | null | 930835808 | false | CSZJSNBGPIFIBAHZYTPMRBM | null | 0.47953341288935725 | OCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSO | 86 42781 | CGCTC | | U | null | 55021129 | false | SXUNGJITKBVEEPVVKXCSIXIBPDC | null | 0.5073404006748695 | IAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYCFSVUZWZMVVVAMVZAAQHDHBHFFAYFMRF | 87 43117 | GGC | | J | null | 261156548 | true | IDFWSGDLLYEDQGNLLGTKZUZKDQYKPUXKEQCQLIRLCADJZBWMMOMXRGCZSQWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJO | null | 0.37878537991521044 | FLHZAHXAQFYBZVVKGXESMQRCAXY | 88 43943 | ATTC | | I | null | null | true | LONOYSMVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSA | null | 0.2964646286340923 | null | 89 44547 | TGGGC | | null | null | null | true | IOTQNACNSNCHTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAADWLGGNHMAZQXNOKCAAFLMKMAPJWDQ | null | 0.457479396913271 | HMBXLWGDWVBAGMPTPSDIRXOPHWHAEEWOYVMXSL | 90 44874 | CTCA | | U | null | null | true | VCSKRHFAOHYQEROWK | null | 0.4893857531586706 | YWNTPMJUZMHOMCUHBNTWZFLRLF | 91 45789 | T | | V | null | null | true | ITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYRE | null | null | PBMUTRLSEYOQUBOR | 92 46656 | GAGC | | K | null | -682714045 | false | NJIVKSVNASIVIN | null | 0.21036323577585736 | IREOPSNYURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJKZFBXWMPOBPUCQYYNYRBIIEWXCXDOUIHQBODOZVZ | 93 47481 | G | | J | null | 2004630449 | true | HIIRGLTWABTAHOQZHIYVYWSNZY | null | 0.19726006900984927 | HROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCIOHYERXDZFDWPGMMPWASXLF | 94 48439 | C | | N | null | -986666946 | null | ZMKACPDAVPUPUFOKMOHRRYEWXXYNLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZAUQLGKFGNIUNT | null | 0.5498634898012835 | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | 95 48708 | CCA | | S | null | -907643995 | false | RQZFIVYJCJCARHWGLTWGVOVBBSKLO | null | 0.8043326769484491 | RBIEZVEAOMG | 96 49276 | TG | | P | null | -2066998677 | null | I | null | 0.7177010134014864 | JXODFUCNQJPJJQLSMLNNQFYI | 97 49401 | CGG | | B | null | -257772742 | true | TNFMNZYQCDRJILYWMZAJHDQZTNWQQYFRYGYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEHBWLJAJASVDEOF | null | 0.4607268875015176 | null | 98 49907 | CAC | | P | null | 966658647 | true | KGDJSHWQNTLSEYGZ | null | 0.6885368220839251 | GTPFQOWDDNZNFTEUCOAEOMVYXBUMZTNLV | 99 50128 | CA | | E | null | 128095220 | false | NUJYTDVTSDBWKWGYBDKAHAQERJYIGNHYAUFUMIMLNOFPVQJAFDXGIRWIXOBXA | null | 0.4811475357641687 | ZGKNAOXKXJTBFDIJHRUHLXSCTNALYGQVYKSHPRPBNLLZYRIMNEOBUKWLLZRFRXCBJ | [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesDataFrameDel [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnChar [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.72 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnChar [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnLong [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.433 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnLong [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnInt [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.044 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnInt [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnBool [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.832 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnBool [INFO] Running org.snpsift.tests.unit.TestCasesConcordance TestCasesConcordance.test_01(68): Test TestCasesConcordance.test_02(74): Test TestCasesConcordance.test_03(80): Test TestCasesConcordance.test_04(91): Test TestCasesConcordance.test_05(102): Test TestCasesConcordance.test_06(113): Test TestCasesConcordance.test_07(125): Test TestCasesConcordance.test_08(131): Test TestCasesConcordance.test_09(142): Test TestCasesConcordance.test_10(153): Test TestCasesConcordance.test_11(164): Test TestCasesConcordance.test_12(181): Test [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 s - in org.snpsift.tests.unit.TestCasesConcordance [INFO] Running org.snpsift.tests.unit.TestCasesAnnotateCreateIndex TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test TestCasesAnnotate.test_02(153): Test TestCasesAnnotate.test_03(161): Test TestCasesAnnotate.test_04(169): Test TestCasesAnnotate.test_05(181): Test TestCasesAnnotate.test_06(192): Test TestCasesAnnotate.test_07(217): Test TestCasesAnnotate.test_08(232): Test TestCasesAnnotate.test_09(245): Test TestCasesAnnotate.test_11(273): Test TestCasesAnnotate.test_12(300): Test TestCasesAnnotate.test_13(320): Test TestCasesAnnotate.test_14(340): Test TestCasesAnnotate.test_15(356): Test TestCasesAnnotate.test_16(372): Test TestCasesAnnotate.test_17(390): Test TestCasesAnnotate.test_18(415): Test TestCasesAnnotate.test_19(428): Test TestCasesAnnotate.test_20(439): Test TestCasesAnnotate.test_21(453): Test TestCasesAnnotate.test_22(479): Test TestCasesAnnotate.test_24(509): Test TestCasesAnnotate.test_25(539): Test TestCasesAnnotate.test_35(693): Test TestCasesAnnotate.test_36(711): Test TestCasesAnnotate.test_38(732): Test TestCasesAnnotate.test_39(743): Test TestCasesAnnotate.test_40(762): Test TestCasesAnnotate.test_41(770): Test TestCasesAnnotate.test_42(781): Test TestCasesAnnotate.test_43(809): Test TestCasesAnnotate.test_44(835): Test TestCasesAnnotate.test_45(861): Test TestCasesAnnotate.test_33_empty_db(665): Test TestCasesAnnotate.test_26_repeat_db_entry(568): Test TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test TestCasesAnnotate.test_28_exists(596): Test TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test [INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.352 s - in org.snpsift.tests.unit.TestCasesAnnotateCreateIndex [INFO] Running org.snpsift.tests.unit.TestCasesFilterALL [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.048 s - in org.snpsift.tests.unit.TestCasesFilterALL [INFO] Running org.snpsift.tests.unit.TestCasesAnnotateUseIndex TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test TestCasesAnnotate.test_02(153): Test TestCasesAnnotate.test_03(161): Test TestCasesAnnotate.test_04(169): Test TestCasesAnnotate.test_05(181): Test TestCasesAnnotate.test_06(192): Test TestCasesAnnotate.test_07(217): Test TestCasesAnnotate.test_08(232): Test TestCasesAnnotate.test_09(245): Test TestCasesAnnotate.test_11(273): Test TestCasesAnnotate.test_12(300): Test TestCasesAnnotate.test_13(320): Test TestCasesAnnotate.test_14(340): Test TestCasesAnnotate.test_15(356): Test TestCasesAnnotate.test_16(372): Test TestCasesAnnotate.test_17(390): Test TestCasesAnnotate.test_18(415): Test TestCasesAnnotate.test_19(428): Test TestCasesAnnotate.test_20(439): Test TestCasesAnnotate.test_21(453): Test TestCasesAnnotate.test_22(479): Test TestCasesAnnotate.test_24(509): Test TestCasesAnnotate.test_25(539): Test TestCasesAnnotate.test_35(693): Test TestCasesAnnotate.test_36(711): Test TestCasesAnnotate.test_38(732): Test TestCasesAnnotate.test_39(743): Test TestCasesAnnotate.test_40(762): Test TestCasesAnnotate.test_41(770): Test TestCasesAnnotate.test_42(781): Test TestCasesAnnotate.test_43(809): Test TestCasesAnnotate.test_44(835): Test TestCasesAnnotate.test_45(861): Test TestCasesAnnotate.test_33_empty_db(665): Test TestCasesAnnotate.test_26_repeat_db_entry(568): Test TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test TestCasesAnnotate.test_28_exists(596): Test TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test [INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.973 s - in org.snpsift.tests.unit.TestCasesAnnotateUseIndex [INFO] Running org.snpsift.tests.unit.TestCasesLd [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.snpsift.tests.unit.TestCasesLd [INFO] Running org.snpsift.tests.unit.TestCasesAnnotateTabix TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test TestCasesAnnotate.test_02(153): Test TestCasesAnnotate.test_03(161): Test TestCasesAnnotate.test_04(169): Test TestCasesAnnotate.test_05(181): Test TestCasesAnnotate.test_06(192): Test TestCasesAnnotate.test_07(217): Test TestCasesAnnotate.test_08(232): Test TestCasesAnnotate.test_09(245): Test TestCasesAnnotate.test_11(273): Test TestCasesAnnotate.test_12(300): Test TestCasesAnnotate.test_13(320): Test TestCasesAnnotate.test_14(340): Test TestCasesAnnotate.test_15(356): Test TestCasesAnnotate.test_16(372): Test TestCasesAnnotate.test_17(390): Test TestCasesAnnotate.test_18(415): Test TestCasesAnnotate.test_19(428): Test TestCasesAnnotate.test_20(439): Test TestCasesAnnotate.test_21(453): Test TestCasesAnnotate.test_22(479): Test TestCasesAnnotate.test_24(509): Test TestCasesAnnotate.test_25(539): Test TestCasesAnnotate.test_35(693): Test TestCasesAnnotate.test_36(711): Test TestCasesAnnotate.test_38(732): Test TestCasesAnnotate.test_39(743): Test TestCasesAnnotate.test_40(762): Test TestCasesAnnotate.test_41(770): Test TestCasesAnnotate.test_42(781): Test TestCasesAnnotate.test_43(809): Test TestCasesAnnotate.test_44(835): Test TestCasesAnnotate.test_45(861): Test TestCasesAnnotate.test_33_empty_db(665): Test TestCasesAnnotate.test_26_repeat_db_entry(568): Test TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test TestCasesAnnotate.test_28_exists(596): Test TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test [INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.589 s - in org.snpsift.tests.unit.TestCasesAnnotateTabix [INFO] Running org.snpsift.tests.unit.TestCasesVcfCheck TestCasesVcfCheck.test_01(18): Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesVcfCheck [INFO] Running org.snpsift.tests.unit.TestCasesFilterChrPos [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.snpsift.tests.unit.TestCasesFilterChrPos [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameMnp DataFrame: MNP, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | GACTC | ATGCT | G | null | -346484495 | false | QZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQCNHEHPBPZOQGQUUVRTPOVSQENPL | null | 0.43979982659080874 | VGLPKFFVDPCDVBXJS | 1 800 | CCA | GAT | S | null | 734084664 | false | YGHKARCZKVIZSFEDWAATTXBGTQUYDTQDGOYRSCIDNLNPVZTXTZUNERDJENKLHKXYEMFMQTLZADZBNDXVF | null | 0.6279332754134727 | XNTLWTQRTLGZHNXJGLETAEGILYUTDVAIF | 2 1259 | TC | GT | S | null | null | false | SRXCKKTJLEUVPLGVIJEDMQLNYMXTSWVOERCTXUKSWFGOETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTD | null | 0.8556303199441717 | IFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBF | 3 1947 | AGAAA | GCGTC | F | null | -135854320 | true | HAYYLXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBKSLLDJGZKGHDVQLAAKWGAU | null | null | | 4 2673 | TC | CG | F | null | -288299077 | true | null | null | 0.7278040889330866 | TPRSHRUNJEPJIC | 5 3562 | AGGTTA | GATAGC | U | null | 162252886 | true | BUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJ | null | 0.028750514440683772 | AMKDDPVNZURFTUUMHFZGRNHENWGVSRDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHAR | 6 4158 | CCTCCC | GAGAAT | B | null | -304213835 | false | MFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTU | null | 0.04102447110373153 | SHHXQXSIOOTQBYAMZRFKJCJOARSXBEQNWBEYBTRLLBJTOPXYAVBUFKFXCYZJXGYVIC | 7 4279 | CC | GG | X | null | 256660382 | false | MONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEO | null | 0.19109407573087445 | ASEUGGPSBVAVQAISGEPOGDMTZP | 8 4676 | TTCTA | GATCC | R | null | -759679086 | false | HYLGVDHQHETXOLC | null | 0.36492146475814047 | VEUUG | 9 5500 | AG | TC | O | null | -1679979548 | false | QKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSWCUNQIYBBUBAZLCDFWYENCGBPHX | null | 0.8750558587334625 | CDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJW | 10 5518 | CAGCA | ACAAT | G | null | -886012130 | false | VHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNAEJFNLP | null | 0.9484603601700132 | MYKFYMDAGCGBDIDZEEHKQQHTZFSFVYKAZIZWLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZT | 11 5728 | ACGC | GTCA | Y | null | -1245654784 | false | IAAHSWFGVIBKKGFWKBYZYNSNTPANSIGHYIAITLYHHFQBGATATIA | null | 0.7194449346355324 | IKEXJRDMJIBLOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZ | 12 6459 | CCG | AGA | null | null | -129760917 | false | BYNFJGRC | null | 0.5882172034343477 | GIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYW | 13 6889 | AGCGC | CCAAG | P | null | 1620772052 | true | null | null | 0.35351188686690904 | FUCMTYDAXAWLEPFSOPHVFZUEFDEJ | 14 7834 | AA | CT | null | null | 335155552 | false | null | null | 0.4086730063619384 | null | 15 8137 | CTAG | TCCT | D | null | 690281034 | true | HBLPLKJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTSDYQC | null | 0.4844370393511812 | UBSELUPRB | 16 9084 | TT | AA | C | null | 917754666 | false | XDMDFINZHSRJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRABIWE | null | 0.6487816358956248 | SWJIIPEMJKSOVNOHLLTOINNESNDAMN | 17 9409 | GCCT | TGAC | null | null | null | false | SFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUSOS | null | 0.5577468336431636 | WNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJS | 18 10001 | TGCACA | ATAGTG | T | null | -1515629276 | null | null | null | null | VSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXT | 19 10311 | GTGT | ACTG | Q | null | -1617046473 | true | YHVYMSZDYZLGDMWL | null | 0.9831828393010831 | UUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDBOCPC | 20 11068 | GT | CG | N | null | 509578579 | null | UKFPBAFIBSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJS | null | 0.7785962769003004 | TPEZATDQXXMYLARYBPGPAPLS | 21 11174 | TGCTCT | AAACTA | P | null | 921144451 | false | WOVCTBZXSFZEKHHLXZIXJKJIXDPIKBKIANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQWXBHOJWCYZUUU | null | 0.9123421937562539 | R | 22 11571 | CTAG | TCCT | D | null | 1718949627 | false | MYOHSRXWUDPVRSRMKLUCGTCFRDYIDIJFX | null | 0.46673104389165376 | TYPTCCKIUXDNSLHWUDRUSZUWXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGV | 23 12078 | CCCT | TTTC | O | null | -1384192067 | false | NJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCSMNEYJGTFPZIVULMYLCDHDSTUTUSRRDMJNIGBCJUBZXLDNNXPCVBJPSNJTEH | null | 0.26815358468775163 | XTCDDIXWJJSJYHEWHKXIGPLGGEVWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFHTNZLHHCQDWURHCUCFMYMTWLAEO | 24 12254 | TCAC | GGTT | null | null | -438374424 | true | null | null | 0.14673592424180915 | AHUDG | 25 12349 | ATCAT | CGGTA | H | null | 758453846 | true | KLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPB | null | 0.2292387309942473 | YYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELV | 26 13123 | CCC | GAT | X | null | -1001450513 | true | JSK | null | 0.2696122012937159 | BHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMVQSQTSRSIRDVTNMTRXPB | 27 13770 | TGAT | GATG | null | null | 2005789910 | true | PWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQWJECWFMMFFDRVQJWARQPOLYAIVYZQWDQPYHXAJOITFCV | null | null | XP | 28 14344 | ACG | TAT | P | null | 1199993081 | true | FQNJQUXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHA | null | 0.5103393097757357 | GVHHLJEBZYNSDERCMAIXBNIQRIEMD | 29 14756 | TGAC | CTTT | N | null | -1804611253 | false | LGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJUVINT | null | 0.7827166701418667 | CUDRTBUEEBJFHEBUIHMNHWIMEDVXAMQMWWROUPEHPKRI | 30 15508 | GAAT | CGTG | H | null | 1220755583 | false | MBQAJLGCZOUMEVVTADJIMOLIX | null | 0.5501110077087921 | TOBMXBPTXHXONSYUZUFENSQQWZBPWGGGPCOYIRUODLHH | 31 16240 | AGGAA | CACGG | U | null | 559197251 | true | HBLMPHXLKKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJ | null | 0.4097318407654317 | RFLVSUERWOAEHZWLSQJA | 32 16358 | GGTA | CAGT | null | null | null | true | QBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOPVYHTILJJSHAQMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZ | null | 0.9780981106199931 | NXLQTNZOAMMXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUV | 33 16976 | AAACAC | TCCGCT | M | null | -319681430 | false | DSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXBOMEYSHEELIYNVOKDHIXALLPUSAKUWJOTDSNJKSFBXNRJBTUVDIAXJ | null | 0.3831246943809442 | BFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHW | 34 17435 | AACCCT | GGTTAA | R | null | -2051070316 | true | LDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJ | null | 0.8501062151834663 | XGCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXR | 35 18205 | AATAT | CCACA | R | null | -1016853906 | false | RQQLRESQTQPMYWUYTHQCHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQM | null | 0.1252305846603955 | YAZDFJJHTKRYJFYFQLAKZUSSPYAPSWB | 36 18671 | CTAA | ACCT | A | null | 312433305 | true | QXSZYHTFPESQNYFKQEPAPSQQOQTKLVFPHTXHKJQVYAMKHLOWPTSYXUYRRGGG | null | 0.7732929039471246 | | 37 18815 | AGGT | TCCC | H | null | -192126094 | true | FDEFEAIUVTSP | null | 0.6687744242493339 | CZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQ | 38 18990 | CCTCC | TTGAG | L | null | 1338557204 | false | KEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLRHFHNQMBPQZMVYTJOPTTGRQOOBAXHWOPEORODIVFVMHWOXPGIWSRG | null | null | ZTXKZAMMIUSGJPTSJDTKELPQHQDIEBEXBHJFIMPPDVZXFSSIZVMSEVENLFRCLOJVRJUUTROOOTNOWPKPFZRWZGJGDREVYFY | 39 19649 | CCTTAT | TTAGGG | R | null | -845218447 | true | AVLQKIFL | null | 0.7741583228840283 | CGXHLBHRLBCINDKYLGDKTYCLAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERA | 40 20607 | GCCAT | TGTCA | K | null | -45025817 | true | YHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCLAUMVGKGUNPFZAZQHYKIPFDMLTTAXEEGFQGXLBBH | null | 0.9691373737772555 | XUKJDPVJPSOBEOLCFOWQUAECVTRUGBQXLOOIN | 41 21156 | GCCGCA | CGTATG | W | null | -1243561189 | true | SMRUPT | null | 0.4429926847541722 | SYPRLU | 42 21806 | TA | AC | null | null | 1735497575 | false | null | null | 0.0394328659741473 | null | 43 21839 | AG | TA | B | null | -865651518 | true | QFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXUL | null | 0.5871949292573951 | EPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTH | 44 22489 | CGATCT | TCGGTC | P | null | 330394861 | false | FFXUWDNIYWXADIYLUONTQMETNMCPYCWDFLSHSINSSHZSF | null | 0.2997445310722515 | | 45 23072 | GTTGGG | CCAAAA | Y | null | -502033321 | true | NUZCBT | null | 0.43276042129899417 | LQDCHDCFNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNP | 46 23295 | GGCCG | AAGAC | Z | null | -1518612753 | null | null | null | 0.6671145728647582 | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | 47 23898 | TCAA | AGGG | O | null | 448265666 | false | GIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCK | null | 0.24165067951893648 | JURGROVHDGOLLVMWBULFCGKDFFUUTDDXURSPKSCNVRUE | 48 24196 | AAGA | CCCT | G | null | 1626222045 | true | UDXOHXBODYUAKYGAHTLQELXYTJ | null | 0.32903298056413266 | IWXCNWIISITBTVMNPAYTHIPNCKCARBO | 49 25181 | GTGG | CGTT | E | null | -1426293938 | true | IUOIHRTVRUYFUACKZH | null | null | GQTKNBBOPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHKAV | 50 25974 | GA | TG | S | null | 1729122195 | null | AUPORVJZTOJMMUPECSVBKGRQSNGDQGTNSIEYGJHVFJLXUAKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYP | null | 0.20879455011120462 | RSBDIILLCGQGDPFJVTKNEZBOQHXUGGG | 51 26128 | GGAC | CTGA | S | null | -2107939295 | true | GDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDD | null | 0.3465217480145627 | GISAKLNHGVIVMCRZGOEXFHZBLHXADISRKTIKXY | 52 26948 | GTTC | CGCT | I | null | 874276164 | false | null | null | 0.8700358952315721 | LUQIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCI | 53 27123 | GAGTTG | TTCGGA | C | null | -1626430403 | false | OOWLPEKVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPE | null | 0.4907299787684579 | ZPZQRZIACBFBDNF | 54 27200 | TCCC | AGTG | null | null | 1628916152 | true | DAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPHVJBHDJDCOBKBBYHBFZDGHGIFVIDZLRXCLXTZSXTKYSTMBQGGRL | null | 0.20887152037949375 | IBZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFERFVNVUBW | 55 27870 | AT | CG | P | null | 918507005 | false | NSPEVNUIRNSROCBCLTAXWNYPFVQNKFDAHZSZPMHFL | null | 0.7860384613677455 | THEUQCNVKQSNISLICNKDKOMR | 56 28608 | GTT | AGG | null | null | 1578678272 | true | PVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPBZSBYHGC | null | 0.6304197165537765 | MZPSCZTRZLGJQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAVQQYZ | 57 29523 | GGTG | TTCT | F | null | null | false | GCXSKCEDPKOLOTGKOBZVLBZNPJBGGWENLYYCJTPADCDDQOGHMOVVSZJDCD | null | 0.8901803045759502 | PETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZKKCJCLUBGMVFISLNJICNTQ | 58 29759 | CTAC | TGCG | F | null | 1755390814 | true | EUPCXSMJBZ | null | 0.10399455024155924 | OECXQBGSKUSCEPQAOEVABQVGYCHU | 59 30240 | GAGC | CGTA | J | null | 245805235 | false | WQCTHQNXHDVMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBFWBJNI | null | 0.4726267810717161 | XQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXVZZIIIHFMWTOZMHCMXPFIOF | 60 30670 | GTACTT | TAGGGA | S | null | 944514871 | true | CXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXH | null | 0.9717077606324023 | LDLEYBCIQCYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVLIAPGDSPUGHRJDVVKHOFAHKHSJB | 61 30689 | GCGG | TATA | M | null | -2073219890 | true | CUBYQEBQREDVKQVRWCEFSWRGIDIFQAFZGNEUXCUGFHDUYGCNDAMPRDVDPCCTNNB | null | 0.9472471024440868 | null | 62 30947 | GTC | AAA | I | null | -667972054 | true | JEAODATZBRRLBEQPWOKOXK | null | null | F | 63 31496 | TACC | ACTT | null | null | -1153848742 | false | WXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKE | null | 0.3776459242637572 | BOQDFQOSGIMGDVIDDYSIARMFNRXIDQWTWJFLQPICWLAKPWYRVDDYVZKYHEGNPULBRVHWTPPXLDCEUJVNDMTNWIV | 64 31944 | TCTA | GGCG | B | null | 486774086 | false | PXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZ | null | 0.3695467993106807 | QDSIHADOFZLPCQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUT | 65 32434 | GGAAGG | ACCTCT | H | null | 1595589726 | false | IMHNAJEWWRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCK | null | 0.1196230872144961 | UODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLL | 66 33205 | CG | GT | Q | null | -54864998 | false | MCMBEVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANB | null | null | HKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGB | 67 33771 | TGCCGC | ACTGAA | J | null | -899793151 | false | XHGUEQLVFIECDHCJEXBPZTNNUGGNQRCFGCLCZLYWEJMYHNTTSXXCLCCPJRBGGEOPFRVIOUHAVSYGXMMWZEJTKL | null | 0.1905641263105804 | ZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCB | 68 34741 | TGATT | CAGAG | F | null | -1225579561 | true | CCUOEWSCGDK | null | 0.881650195389698 | YDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVT | 69 35499 | CT | AG | K | null | -276395645 | false | null | null | 0.977751537018833 | ZPEPQWRMMWVETGLEKPBV | 70 35546 | AT | CG | null | null | 2040100435 | true | ZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPN | null | 0.09037104358084358 | BSUHN | 71 36433 | GGCT | ATGC | C | null | 168413364 | true | null | null | 0.1904413360563667 | JHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFH | 72 37416 | CG | TC | M | null | 1814030146 | true | DIISR | null | 0.27648269722880425 | JWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHH | 73 38285 | AGC | TTA | D | null | -804208911 | null | OKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEP | null | 0.9198539785480527 | null | 74 38361 | GCTGAC | AAACCT | G | null | null | false | SVPYLUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZ | null | 0.9186628435199452 | FHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCH | 75 38632 | CCTAGC | TAGGTT | J | null | -1928769563 | false | ZC | null | 0.12015177706912317 | PRCYFYRJ | 76 39006 | TCG | ATC | S | null | -1435537229 | true | VSZPXVTNOEXWQQVTGTYHRY | null | 0.10825272757712423 | AEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTIDOMJAM | 77 39326 | CTGG | GCCC | N | null | 1238244676 | false | RPGGYYEALD | null | 0.41559312842378404 | YXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZ | 78 39616 | AT | GC | P | null | 193791099 | false | YTCT | null | 0.2178404304349859 | PFDYCFBWFIJOYSGWEIOFGIU | 79 40139 | TGTAGT | CAGGTA | F | null | 928401180 | true | null | null | 0.4941678716122485 | GHUMR | 80 40682 | AC | GA | null | null | -510409048 | false | GMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJWPUVXZZYK | null | 0.6826290896912366 | GZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYXQZREBEHX | 81 40844 | GTTTC | CGCCG | M | null | 838024760 | true | UVO | null | 0.5626054761915171 | FDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVXJVCQCBJL | 82 41772 | TT | CG | null | null | -1963423867 | false | ZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCM | null | 0.06821448380998862 | null | 83 42405 | GGAGAT | CCGAGA | null | null | 599980869 | true | SVREX | null | 0.557000574778266 | BCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGAV | 84 42798 | AAAT | CCTC | W | null | -433896788 | true | NNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURG | null | 0.8086382761333594 | null | 85 43166 | TCCTT | GTGCG | P | null | -212160676 | false | DASKPMDBASJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQ | null | 0.4004611468446073 | OL | 86 43893 | TCAA | ATCG | A | null | -1842380129 | true | ALSCGAZOEWAOGVKFINKY | null | 0.6941442078114862 | null | 87 44799 | CTATG | AATGA | C | null | 1518735330 | false | TEGAXQHZZKHNCPGXUCFAOCDFSUNIOOVESGTIPFVKUARMU | null | 0.035089348611912374 | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | 88 44980 | ACACG | GGGGT | A | null | -1094185683 | true | DFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYCFSVUZWZMVVVAMVZAAQHDHBHFF | null | 0.39624910302016625 | SOPTTCSZJSNBGPIFIBAHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIA | 89 45514 | CTAGGG | GCTATT | C | null | 829369797 | true | FYBZVVKGXESMQRCAXYFQXIDFWSGDLLYEDQGNLLGTKZUZKDQYKPUXKE | null | 0.06802209908917545 | CIIEIJGPIYRYOKKJGWQFGMJFLHZAH | 90 46164 | CTT | TGC | M | null | -814452473 | false | YGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAXBELONOYSMVTAGLUXLTSFSUXWPAZ | null | 0.7938675906527775 | | 91 46724 | TTATGC | GGTAAA | P | null | 1882730814 | true | PTPSDIRXOPHWHAEEWOYVMXSLFZPIOTQNACNSNCHTLNYRRGIOERSJAEXC | null | 0.37844740748624583 | XIXGKFSRYQHMBXLWGDWVB | 92 46735 | GACGC | TCTTG | G | null | 575014296 | false | OMCUHBNTWZFLRLFXDZVCSKRHFAO | null | 0.5133194346909566 | XNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJU | 93 47404 | GACG | TTGA | V | null | 681339300 | true | ITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRNLCTBUBYRE | null | null | PBMUTRLSEYOQUBOR | 94 48271 | GAGCG | TTTAT | Z | null | 300539013 | true | null | null | 0.936695453283102 | YURKLHJCGPENFCMKHHRQKKZSZXYRELEZOLEJK | 95 48812 | CT | GG | B | null | -538906411 | false | ERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHO | null | 0.7202708244462117 | DOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJWMSIQXMEWEAZFGHCI | 96 49292 | TGGT | CACG | P | null | 2113525344 | false | OXWUWWVTQCERGGEXGBKDKARWVUJORUWGNVSSQWFYCDFHHPEE | null | null | null | 97 49663 | TTCTA | GGTAG | H | null | -1954124469 | false | GKFGNIUNTJWMMJQHSKQ | null | null | YNLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCTCJDBQOFZHSTNZA | 98 49944 | TAAC | CGCA | G | null | -1858433447 | true | RVKVELGN | null | 0.8010342281968461 | IVYJCJCARHWGLTWGVOVBBSKLOOZKHCWJZYEZKSPMSDXYJXODFUCNQJPJJQLSMLNNQFYIWKZIB | 99 50194 | CTT | TAC | Y | null | -944159107 | true | QYFRYGYRGQQXTQSITYGVHCIJQYUMGDLDKITYVVNHWOBSZWJLXTOEHBWLJAJASVDEOFQVPOEGNJ | null | 0.06701482985829554 | YWMZAJHDQZT | [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.snpsift.tests.unit.TestCasesDataFrameMnp [INFO] Running org.snpsift.tests.unit.TestCasesCaseControl TestCasesCaseControl.test_01(53): Test TestCasesCaseControl.test_02(65): Test TestCasesCaseControl.test_03(83): Test TestCasesCaseControl.test_04(107): Test TestCasesCaseControl.test_05(119): Test TestCasesCaseControl.test_06(125): Test TestCasesCaseControl.test_07(131): Test TestCasesCaseControl.test_08(137): Test TestCasesCaseControl.test_09(146): Test TestCasesCaseControl.test_10(222): Test TestCasesCaseControl.test_02_Str2(77): Test TestCasesCaseControl.test_03_Str2(95): Test TestCasesCaseControl.test_03_Str3(101): Test TestCasesCaseControl.test_01_Str(59): Test TestCasesCaseControl.test_02_Str(71): Test TestCasesCaseControl.test_03_Str(89): Test TestCasesCaseControl.test_04_Str(113): Test [INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.199 s - in org.snpsift.tests.unit.TestCasesCaseControl [INFO] Running org.snpsift.tests.unit.TestCasesStringArray [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 24.745 s - in org.snpsift.tests.unit.TestCasesStringArray [INFO] Running org.snpsift.tests.unit.TestCasesBoolArray [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.515 s - in org.snpsift.tests.unit.TestCasesBoolArray [INFO] Running org.snpsift.tests.unit.TestCasesSplit TestCasesSplit.test_01(28): Test TestCasesSplit.test_02(58): Test TestCasesSplit.test_03(84): Test [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.snpsift.tests.unit.TestCasesSplit [INFO] Running org.snpsift.tests.unit.TestCasesFilter TestCasesFilter.test_57_short_circuit_AND_OR_operators(1724): Test TestCasesFilter.test_32_ann(988): Test TestCasesFilter.test_33_ann(1049): Test TestCasesFilter.test_34_ann(1108): Test TestCasesFilter.test_35_ann(1167): Test TestCasesFilter.test_01(40): Test TestCasesFilter.test_02(64): Test TestCasesFilter.test_03(86): Test TestCasesFilter.test_04(110): Test TestCasesFilter.test_05(134): Test TestCasesFilter.test_06(158): Test TestCasesFilter.test_07(182): Test TestCasesFilter.test_08(208): Test TestCasesFilter.test_09(236): Test TestCasesFilter.test_10(258): Test TestCasesFilter.test_11(281): Test TestCasesFilter.test_12(303): Test TestCasesFilter.test_13(326): Test TestCasesFilter.test_14(348): Test TestCasesFilter.test_15(381): Test TestCasesFilter.test_16(407): Test TestCasesFilter.test_17(435): Test TestCasesFilter.test_18(459): Test TestCasesFilter.test_19(483): Test TestCasesFilter.test_20(507): Test TestCasesFilter.test_21(532): Test TestCasesFilter.test_22(559): Test TestCasesFilter.test_23(615): Test TestCasesFilter.test_24(642): Test TestCasesFilter.test_25(669): Test TestCasesFilter.test_26(697): Test TestCasesFilter.test_27(748): Test TestCasesFilter.test_28(846): Test TestCasesFilter.test_29(875): Test TestCasesFilter.test_30(903): Test TestCasesFilter.test_31(932): Test TestCasesFilter.test_32(960): Test TestCasesFilter.test_33(1021): Test TestCasesFilter.test_34(1081): Test TestCasesFilter.test_35(1140): Test TestCasesFilter.test_36(1198): Test TestCasesFilter.test_37(1222): Test TestCasesFilter.test_38(1247): Test TestCasesFilter.test_39(1272): Test TestCasesFilter.test_40(1295): Test TestCasesFilter.test_41(1320): Test TestCasesFilter.test_42(1356): Test TestCasesFilter.test_43(1374): Test TestCasesFilter.test_44(1392): Test TestCasesFilter.test_45(1410): Test TestCasesFilter.test_46(1437): Test TestCasesFilter.test_47(1448): Test TestCasesFilter.test_48(1459): Test TestCasesFilter.test_49(1475): Test TestCasesFilter.test_50(1494): Test TestCasesFilter.test_51(1526): Test TestCasesFilter.test_52(1560): Test TestCasesFilter.test_53(1583): Test TestCasesFilter.test_54(1605): Test TestCasesFilter.test_55(1627): Test TestCasesFilter.test_22_3(589): Test TestCasesFilter.test_55_2(1647): Test TestCasesFilter.test_55_3(1667): Test TestCasesFilter.test_56_empty_vcf(1687): Test TestCasesFilter.test_58_rmFilter_info_field(1747): Test TestCasesFilter.test_27_ann2(812): Test TestCasesFilter.test_26_ann(721): Test TestCasesFilter.test_27_ann(778): Test [INFO] Tests run: 68, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.989 s - in org.snpsift.tests.unit.TestCasesFilter [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnString DataFrameColumnString.resize(76): Converting column 'Test' to EnumArray. Found 6 enums found. Size before: 44 B, after: 5 B [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 24.964 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnString [INFO] Running org.snpsift.tests.unit.TestCasesPosIndex [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.snpsift.tests.unit.TestCasesPosIndex [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameColumnFloat [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.584 s - in org.snpsift.tests.unit.TestCasesDataFrameColumnFloat [INFO] Running org.snpsift.tests.unit.TestCasesIntervals TestCasesIntervals.test_01(25): Test TestCasesIntervals.test_02(50): Test [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.snpsift.tests.unit.TestCasesIntervals [INFO] Running org.snpsift.tests.unit.TestCasesIndex TestCasesIndex.test_01(32): Test TestCasesIndex.test_02(84): Test [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.846 s - in org.snpsift.tests.unit.TestCasesIndex [INFO] Running org.snpsift.tests.unit.TestCasesEnumArray EnumArray: length: 17 / 17, number of enums: 6 0: 'one' (1) 1: 'two' (2) 2: 'three' (3) 3: 'four' (4) 4: 'five' (5) 5: 'three' (3) 6: 'four' (4) 7: 'five' (5) 8: 'three' (3) 9: 'four' (4) [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.703 s - in org.snpsift.tests.unit.TestCasesEnumArray [INFO] Running org.snpsift.tests.unit.TestCasesAnnotate TestCasesAnnotate.test_31_annotate_minimal_representation_db(642): Test TestCasesAnnotate.test_29_repeated_IDs(618): Test TestCasesAnnotate.test_01(145): Test TestCasesAnnotate.test_02(153): Test TestCasesAnnotate.test_03(161): Test TestCasesAnnotate.test_04(169): Test TestCasesAnnotate.test_05(181): Test TestCasesAnnotate.test_06(192): Test TestCasesAnnotate.test_07(217): Test TestCasesAnnotate.test_08(232): Test TestCasesAnnotate.test_09(245): Test TestCasesAnnotate.test_11(273): Test TestCasesAnnotate.test_12(300): Test TestCasesAnnotate.test_13(320): Test TestCasesAnnotate.test_14(340): Test TestCasesAnnotate.test_15(356): Test TestCasesAnnotate.test_16(372): Test TestCasesAnnotate.test_17(390): Test TestCasesAnnotate.test_18(415): Test TestCasesAnnotate.test_19(428): Test TestCasesAnnotate.test_20(439): Test TestCasesAnnotate.test_21(453): Test TestCasesAnnotate.test_22(479): Test TestCasesAnnotate.test_24(509): Test TestCasesAnnotate.test_25(539): Test TestCasesAnnotate.test_35(693): Test TestCasesAnnotate.test_36(711): Test TestCasesAnnotate.test_38(732): Test TestCasesAnnotate.test_39(743): Test TestCasesAnnotate.test_40(762): Test TestCasesAnnotate.test_41(770): Test TestCasesAnnotate.test_42(781): Test TestCasesAnnotate.test_43(809): Test TestCasesAnnotate.test_44(835): Test TestCasesAnnotate.test_45(861): Test TestCasesAnnotate.test_33_empty_db(665): Test TestCasesAnnotate.test_26_repeat_db_entry(568): Test TestCasesAnnotate.test_32_annotate_minimal_representation_input(654): Test TestCasesAnnotate.test_28_exists(596): Test TestCasesAnnotate.test_34_dbStartsOnDifferentChromo(676): Test TestCasesAnnotate.test_23_allele_specific_annotation_missing_R(491): Test TestCasesAnnotate.test_27_repeat_db_entry(580): Test [INFO] Tests run: 42, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.847 s - in org.snpsift.tests.unit.TestCasesAnnotate [INFO] Running org.snpsift.tests.unit.TestCasesDataFrameSnp DataFrame: SNP_A, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | G | A | null | null | null | true | EHPBPZOQGQUUVRTPOVSQENPLWOJYBWQKVGUIHFQWUSYUOXQ | null | 0.7077105889551186 | LZORARZVMGTYMKSHHVGLPKFFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQ | 1 757 | C | A | T | null | -1414941450 | true | JHSDKMELBXLUSSYJWTCQVIFLIJUELKBKEYJKNTHRFDXBCCKBLVOSVEUQFWT | null | null | 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EBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUU | null | 0.8341152351901386 | HXAJOITFCVMOPIMPXRLKAIEIOUMPNXSABCPGVH | 30 13559 | G | A | null | null | -784355308 | false | KRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJDPHXFJ | null | 0.8919018013118993 | VSJEYOUPPNBVRPSISCUDRTBUEEBJFHEBUIHMNHWIMEDVXAMQMWWROUP | 31 13979 | C | A | G | null | 604597538 | false | HXO | null | 0.5737767537412954 | MXGLYBFIHLNCHAUOTOBMXB | 32 14208 | T | A | Z | null | 889094607 | false | KCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZSOSWWVMRPXNYNX | null | 0.7348688792213431 | COYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVSUERWOAEHZWLSQJATLMHBLMPH | 33 14411 | C | A | P | null | -1277757986 | true | KYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOP | null | 0.8142863771145411 | M | 34 14916 | T | A | Q | null | -2031558444 | false | 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| 0.06608935143869987 | VHWTPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYIC | 68 32279 | C | A | U | null | null | false | CQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCD | null | 0.8661449413480625 | IHADOF | 69 32608 | T | A | R | null | 885653722 | false | CEUAJYIQKIXRLLYWEHVGXFPHAAUD | null | 0.9988775237005663 | XXUODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQAJLIVJLLIVKIMHNAJEWWRVWIZSGQPVZGJVDJ | 70 33008 | G | A | J | null | 945969148 | false | QBBTBRGBKZFMCM | null | 0.32096214117959965 | KHVYQCQKXUPYHKVOPSCJYNGPAHAHNQKARYGFZFXQHIJKMWIEK | 71 33459 | T | A | Z | null | -1727043276 | true | null | null | 0.6692453147361582 | BKTOJGDTUTFKJQGNEXEKZSZQ | 72 34070 | T | A | W | null | -522264751 | false | CZBQOPQ | null | 0.3706339971103657 | MFLNYIAJYPS | 73 34080 | G | A | Q | null | -1031944423 | true | BUUEXHGUEQLVFIECDHCJEXBPZTNNUGGNQRCFGCLCZL | null | 0.8044321661564519 | UHOZCYODCFABSKEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNUL | 74 34998 | C | A | X | null | -748117835 | true | EKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGHPSMAIZCPBATXXVHGDQXVTUTLCCUOEWSCGDKYTEGYYTNJQBYHCWLKK | null | 0.8214445816892618 | RBGGEOPFRVIOUHAVSYGXMMWZEJTKLGQIGRWFRRQPOKVFNLUBIYFBAUNPDVY | 75 35245 | G | A | E | null | 1713093473 | false | KRZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFX | null | null | VETGLEKPBVHLRZZCIVSXZRKBEOERVKNQMYPBSU | 76 35544 | C | A | M | null | null | true | SIBGCAUOFFYVS | null | 0.8641128569289488 | ZPNNKYYWJASSEOOTVOMHEQALCBNSOIUBJHULZAQBBRFRJGAZJF | 77 35671 | C | A | P | null | null | false | CADYZZKOKNDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZ | null | 0.3987435782174066 | XFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDIISRJLHXN | 78 36561 | T | A | D | null | -1460529165 | true | XWBHGEOLXJAFLXULPZGOHHPVYKONTTVCOQNLCWSMQUCHQQLSVPYLUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZLFFD | null | 0.6853806738425013 | JMJVZNNVTYOGCLPAAEWFHXXHZSKILOGWYTQN | 79 37461 | G | A | Q | null | -370738731 | false | JTNZIUKYPRCYFYRJTIMZCUTWALOTKNBHTORFBZWSPFYBDENAEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKM | null | 0.6877880916304786 | null | 80 37688 | T | A | M | null | null | false | AOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBI | null | 0.11235770546609591 | XVTNOEXWQQVTGTYHRYIKSBPMDLKYANUQQSBHHFNJMSBKHRYXQMXNCHRFX | 81 37872 | C | A | P | null | 918728225 | true | TCTJJQZLBEIWXLIDELTXVWYOGYCNFDSSXEVDGHUMRBMPSIPOELOIZALCSFUBICUYVGZRUC | null | 0.22246030326656885 | DQDPRHSPDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUX | 82 38240 | C | A | D | null | 799276516 | true | VXZZYKIRENGVZILQ | null | 0.9266466937796255 | NDEAFXIIBLWZYUZUWYXQZREBEHXQZJGMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJ | 83 39087 | C | A | S | null | -24941154 | false | DPSXOBUVDYUVXJVCQC | null | 0.7331699812800507 | YFDZCXTCGTGQRTIAPDDYSLBHDYOEYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQ | 84 39848 | C | A | U | null | -1693220490 | false | TPSRJHDKBDZEZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCMJAMIHT | null | 0.13371271442356658 | null | 85 40311 | T | A | Q | null | 1393421383 | false | PJLNBCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVX | null | 0.6531233959776986 | null | 86 41221 | C | A | X | null | null | true | WXONPKQUQOCSOLGKFDASKPM | null | 0.6053836153414445 | HAHLUYTGFNUMWYCYFWSDUVNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVURGSXFJCAXCGZKZKGXU | 87 41864 | C | A | K | null | 468567806 | true | RORVMYYKPYAM | null | 0.11273881633613159 | IGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQ | 88 42064 | T | A | C | null | null | true | TIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEEPC | null | 0.331658923043161 | OGVKFINKYIWQEGYAKQZXEGXNLLREPZFWVCTQTHORMWUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUV | 89 42509 | G | A | H | null | -1246328247 | false | PMRBMYNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKT | null | 0.15343423367903142 | FAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPIFIBAH | 90 43153 | C | A | R | null | 807042979 | false | GTZFGXFMSSZQVMYCFSVUZWZMVVVAMVZAAQHDHBHFFAYFMRFBHJSXUNGJITKBVEEPVVKXCSIXIBPDCIIEIJGPIYRYOKKJGWQFGM | null | 0.9386411416386536 | null | 91 43380 | G | A | Y | null | -2089396397 | true | SGDLLYEDQGNLLGTKZUZKDQYKPUXKEQCQLI | null | 0.11007731621246053 | ESMQRCAXYFQXI | 92 44013 | G | A | O | null | 897370038 | true | ONOYSMVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMPTPSDIRXOPHW | null | 0.5924396633188068 | QWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAX | 93 44026 | C | A | L | null | 985953272 | true | MAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWN | null | 0.6715564052618268 | NACNSNCHTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAADWLG | 94 44993 | C | A | U | null | 660772828 | true | RWBWITTSCTVWERUBUYFRQAZEOOVZJFXKRBSP | null | 0.862677140873428 | LRLFXDZVCSKRHFAOHYQEROWKFMUZWTWVWVEASCDWYPBMUTRLSEYOQ | 95 45470 | C | A | V | null | -1024151526 | false | RKLHJC | null | 0.549969275294569 | TBUBYREHOBNQZAXRCSAFUCKBVTXSFZIREOPS | 96 45856 | T | A | Q | null | -1501848022 | true | null | null | 0.8681195274458912 | null | 97 46816 | G | A | X | null | null | true | QXMEWEAZFGHCIOHYERXDZFDWPGMMPWASXLFEMMHIIRGLTWABTAHOQZHIYVYWSNZYSVHEUPARPRXANOYECAOXWUWWVT | null | 0.13316878795796683 | CQYYNYRBIIEWXCXDOUIHQBODOZVZMZKNJIVKSVNASIVINPVYVOOFJZLLPJAFKPFDVHROQPHOPRLLGYJFDTJW | 98 47348 | T | A | D | null | -1744261515 | true | UWGNVSSQWFYCDFHHPEETPXZMKACPDAVPUPUFOKMOHRRYEWXXYNLPWODAVFQLYFWYGSXOQWBSZMNVAMWWRCT | null | 0.0747086820367786 | null | 99 47714 | C | A | A | null | -408548646 | true | JWMMJQHSKQBSLLSGOWIMIRRBIEZVEAOMGJVFRQZFIVYJCJCARHWGLTWGVOVBBSKLOOZKHCWJZYEZK | null | 0.5351096975610091 | NI | DataFrame: SNP_C, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | A | C | null | null | 1325939940 | true | EHPBPZOQGQUUVRTPOVSQENPLWOJYBWQKVGUIHFQWUSYUOXQ | null | 0.7077105889551186 | LZORARZVMGTYMKSHHVGLPKFFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQ | 1 757 | A | C | L | null | 117313442 | false | AEGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGT | null | 0.4686717016077616 | | 2 1425 | T | C | S | null | -435642541 | false | LZADZBNDXVFRJHSDKMELB | null | 0.014055818452733182 | VZTXTZUNERDJENKLHKXYEMF | 3 1532 | T | C | V | null | -1468434616 | true | VOERCTXUKSWFGOETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCS | null | 0.69709331396258 | LKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKTJLEUVPLGVIJEDMQLNYMX | 4 1626 | G | C | L | null | 76479700 | true | YYLXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJPARNUOSXOMPBKSLLDJGZKGHDVQLAAKWGAUODCZN | null | 0.5472075167262199 | CPTTGMGC | 5 2037 | G | C | W | null | 497861789 | false | CKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVOD | null | 0.6228544201629813 | PRSHRUNJEPJICSFDIBMCDIQEETUIGTSZJPBVKGYBSVUHJBXPLIAMKDDPVNZURFTUUMHFZGRNHENWGVSRDGKVKAR | 6 2057 | T | C | P | null | -1406811197 | true | AQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZRFKJCJOA | null | 0.48687173749553314 | null | 7 2860 | A | C | B | null | 1001974229 | false | AMFVVWSPTNCGQIEMXRMHTEIGRNSQPPZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQ | null | 0.9430161143370018 | OPXYAVBUFKFXCYZJXGYVI | 8 3817 | A | C | N | null | 820742796 | true | TBXWQKICCOGOWJJGUZZCQW | null | 0.5926161499838429 | UGGPSBVAVQAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZWSEEYMAVCOM | 9 4413 | A | C | N | null | 1119905417 | false | null | null | 0.7852648697879052 | GWEOJWYMVUDHDFKUXNMTUYJPZYRUZCWFGZVEUUGMRBHYLGVDHQHETXOL | 10 4813 | A | C | E | null | 1720339637 | true | PXD | null | 0.6088492750640411 | CHTCDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCATSLLZV | 11 5524 | A | C | W | null | -1363857139 | false | SRWAOUSCYHUHUBGDWQETIVGKEMLVCLMYKFYMDAGCGBDIDZEEHKQ | null | 0.5340339813731204 | VRQKHZFHKBJCCBTEBDJKRNQUULWPMBXFIJAJIWKOWUCMTSWCUNQIYBBUBAZLCDFWYENCGB | 12 5648 | G | C | null | null | null | false | null | null | 0.7204961878614636 | TSIBGVBUMVBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZTPWRVHQMFXCK | 13 5917 | A | C | Z | null | 121572172 | null | NLPAVTXNBSMPGICZGSAAKUXYRDHISDKIKEXJRDMJIBLOBLSKDWFONVIKAEYDXPOHDKZTC | null | 0.7094489766507978 | MRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNA | 14 6459 | A | C | K | null | -1220586919 | false | FQBGATATIARJNANENEUPMRUWTMUTOOPMQNUGIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIYXBMRV | null | 0.8919390102660923 | DJKZSAFIAAHSWFGVIBKKGFWKBYZYNSNTPANSIGHYIAITL | 15 6679 | A | C | J | null | 940454155 | false | MHOCPKFQIYOKFUCMTYD | null | 0.19631180378072444 | YGQYRZLRREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNX | 16 7181 | T | C | H | null | 576887710 | false | XUBSELUPRBRXWHBLPLKJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVRXGVGFTV | null | 0.07720664912473318 | EJNVDJVDIURYCMIRNPAQXDXXUOXPYASMSHLSHBDGHYGPIRBDKXC | 17 8074 | T | C | J | null | -422146125 | false | WKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZ | null | 0.39924721679807706 | RBUUMGFVSGRPTSDYQCNFNNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFINZHSRJSFVGSMS | 18 8901 | T | C | U | null | 1006707364 | false | CBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFU | null | 0.2724737555583038 | POWKBQYRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZOEZULNPISAMSOKHMUACOJSAMYSFHFDOWTMCRLMYTT | 19 9057 | G | C | null | null | null | false | BIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXTHTYNYBD | null | 0.5245560595402556 | null | 20 9759 | A | C | Q | null | -102713501 | true | DBOCPCAQQYHVYMSZDYZLGDMWLBJJADJNZBAVOBMTNXMJZA | null | 0.987999856038869 | ATSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBAC | 21 10438 | A | C | X | null | 5277273 | true | XSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJKJIXDPIKBKIANCKLACLYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDTQW | null | null | PGPAPLSOYBUKFPBAFIBSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJSGVZPTFTXFB | 22 10667 | T | C | V | null | 1204505736 | null | VUIDXQKLPR | null | 0.0747072190044199 | TOLYAFTMUP | 23 11041 | G | C | null | null | 39675779 | false | XQEXRAAQDWLXMONCLSJNJFGBQRLQGVCFGVOADMYOHSRXWUDP | null | 0.200656308174055 | DRUSZUWXBVOUOUYTQUNP | 24 11932 | A | C | C | null | 1447277076 | false | WHKXIGPLGGEVWJSEISSNATDXNUGEPQVNYFYDKVSQXWTECOSPWSYPWHFH | null | 0.038605111882175636 | JFXVPQAKHPQEWWNHVSQLOTMXOVRAGOTTXTCDDIXWJJSJ | 25 12491 | T | C | H | null | 988757342 | false | VULMYLCDHDSTUT | null | 0.7658555547661529 | TWLAEORAANJSPJFRKXQOSMDDYBVPNIPFGNGFXOYMCPAZFZCSMNEYJGTF | 26 12957 | T | C | C | null | -592135898 | false | PZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIOBZJSTXAOFYSGHZWIFOJXYYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQR | null | 0.39224060732371047 | NNXPCVBJPSNJTEH | 27 13152 | A | C | null | null | -1315294767 | false | QGLOBMZVVFLNSWMQXUCJTEKJBHRBKIFJPGHPQTYO | null | 0.12764604542692848 | KLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPB | 28 14016 | T | C | Y | null | 397797617 | false | CWFMMFFDRVQJWARQPOLYAIVYZQ | null | 0.6606672661308439 | TSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQ | 29 14342 | A | C | T | null | -1987493819 | false | LKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRPS | null | 0.5257024134636187 | MPXRLKAIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIGIACWWMBNSJ | 30 15242 | A | C | B | null | 401189003 | true | null | null | 0.38830464061684267 | null | 31 16050 | T | C | M | null | -912434516 | true | FJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXBPTXHXONSYUZUFENSQQWZBPWG | null | 0.1980054990409249 | PEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJD | 32 16690 | T | C | H | null | 1517047320 | false | null | null | 0.8379316023844177 | AJLGCZOUMEVVTADJ | 33 16910 | T | C | F | null | -397603831 | true | AGVGOEUXJCGASKRFLVSUERWOA | null | 0.5704988038983347 | null | 34 17722 | A | C | H | null | 466219921 | true | OAMMXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVW | null | 0.10743163842113601 | KKCJCRPRWZMRUHRDHRWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZSOSWWVMRPXNYNXLQ | 35 18141 | G | C | T | null | -260961560 | false | null | null | 0.13847150405507225 | null | 36 18777 | A | C | Y | null | 1184228205 | false | QMNRSPVOKGXZIMBNHOHFIONKJDLERDGTFZPBBLHWZQAMTRPVRW | null | 0.7065858600517958 | null | 37 19768 | G | C | J | null | 1952582250 | null | KSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHWPTPDSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXBOMEYSHEELIYNV | null | 0.16341591642736342 | TTEKBFTTAFFZUAIURYMGGUW | 38 20090 | T | C | S | null | -329728495 | false | OYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYC | null | 0.10317526862175708 | DSNJKSFBXNRJBTUVDIAXJXSRAABIXFMQFNGHXLSOEAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLR | 39 20562 | G | C | F | null | 1804923979 | true | HZBCOERGUMYYDMVTOZFRCDZWFXPYAZDFJJHTKRYJFYFQ | null | 0.2195458587951088 | OGHTWJC | 40 21053 | G | C | B | null | -144337035 | false | NEIIVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQMAPZOPDSXSKNPUUTRASSVAQLBASZKUOAQXSZYHTFPESQNYFKQEPAPSQQOQ | null | 0.6307428626490887 | RESQTQPMYWUYTHQCHTPHGWMYYPIWPAH | 41 21806 | A | C | Q | null | -2088069898 | false | PTSYXUYRRGGGIIANNDJRSSXCAJCOPYYTHKUHLZDK | null | 0.6231257518601767 | null | 42 22058 | A | C | D | null | -345702397 | true | EFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUOIJTCPZTXKZA | null | 0.35599371966149784 | RZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMYZTQXJ | 43 23054 | G | C | T | null | 121063657 | false | null | null | 0.6568110946338338 | DIEBEXBHJFIMPP | 44 23245 | G | C | E | null | null | true | EUPAZPLXVMDCCMGQOMKTOVGLRHFHNQMBPQZMVYTJOPTTGRQOOBAXHWOPEORODI | null | 0.44806773421618973 | LOJVRJUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZC | 45 23280 | G | C | W | null | 578554250 | false | DKYLGDKTYCLAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJ | null | 0.04624360636075597 | EHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLB | 46 23879 | A | C | B | null | -1095543088 | false | null | null | 0.38605120753190303 | ODKOLTDOBNXUKJDPVJPSOBEOLCFOWQUAEC | 47 24298 | G | C | V | null | -1476423743 | false | LTTAXEEGFQGXLBBHXRCJVLXRLFKYGSTLWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNR | null | 0.11715762961725507 | UEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCLAUMVGKGUNPFZAZQHYKIP | 48 24903 | A | C | W | null | 390077302 | false | PZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOP | null | 0.7984498050273369 | K | 49 25202 | G | C | Q | null | -836597398 | true | XBDIORIOEWPXUPJBBEKPQSARFFX | null | 0.5729985772223652 | RNQFDCVJHOASYFSNYLHTKKYEXOXXCVQFFNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOE | 50 26096 | T | C | Y | null | -956685735 | true | CWDFLSHSINSSHZSFLFTPMDXIFUGVSFLODMYZHILGJSYHWBHIFILQDC | null | 0.17880359829479353 | ETNM | 51 26449 | A | C | D | null | 466935695 | true | HDQFNZRIJLEGPLJGZKGBBUEWZX | null | 0.22059988335771297 | PVDMZCMWALBHBZSDNPAZQNUZCBTVECALPBVRYGCTNG | 52 27377 | A | C | S | null | 1416258910 | false | UTDDXURSPKSCNVRUEZJVGIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCKWPZQGZKFCTR | null | 0.8257088275299405 | FJUUCLNKWXYBNONXNRMRDSFQOYVQPTTMGBOOHSFOWUIJURGROVHDGOLLVMWBULFCGKD | 53 27405 | T | C | B | null | -1957676038 | true | GQTKNBBOPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHKAV | null | 0.2211636637864719 | NWIISITBTVMNPAYTHIPNCKCARBOCHEUDXOHXBODYUAKYGAHTLQELXYTJNNNPXLEGILTKJKBPLEWXUA | 54 27524 | T | C | V | null | null | true | RQSN | null | 0.05046136960776815 | KZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZTOJMMUPECSV | 55 27762 | G | C | J | null | 337814814 | true | IFLOGISAKLNHGVIVMCRZGOEXFHZBLHXADISRKTIKX | null | 0.9415580589124032 | AKKXEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZERS | 56 28026 | A | C | D | null | 1256061260 | false | QIIWDFWFESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJ | null | 0.968496265784478 | SGVRGHDPVVEJASWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMBTCCYEASQAPHIVZCCVY | 57 28778 | T | C | V | null | null | true | ZIACBFBDNFDLHOOWLPEKVRDEKAKMMIVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJG | null | 0.7688990285080709 | CIPPPILVEHYJBDBLQWQTZGEERZXKCHCRVOGQDTZP | 58 29129 | T | C | null | null | 980721615 | true | ZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEO | null | 0.4622995304977632 | QFIGJUIQDVGBK | 59 29636 | A | C | D | null | 1390914368 | true | X | null | null | VJBHDJDCOBKBBYHBFZDGHGIFVID | 60 30474 | G | C | M | null | 1515055969 | true | FVQNKFDAHZSZPMHFLCLYQVZEKQB | null | 0.7409815665149543 | XDSRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTAXW | 61 30610 | A | C | F | null | 90735203 | false | LRDVNCSQBWFUIKAVQQY | null | null | SCZTRZLGJQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCG | 62 31325 | T | C | T | null | 1852795286 | false | EIMCPBZSBYHGCJJCHZAJAJHIZFPZJVLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZK | null | 0.6132294578078568 | ZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCN | 63 32141 | A | C | I | null | 513821018 | true | WENLYYCJTPADCDDQOGHMOVVSZJDCDAWFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEPQAOEVABQVGYCHUOTAEUPCXSMJ | null | 0.013355374167080325 | TQKOCGCXSKCEDPKOLOTGKOBZVLBZNPJ | 64 32520 | G | C | B | null | -1621505252 | true | WCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDX | null | 0.4998322634463337 | N | 65 32607 | G | C | null | null | -339319550 | false | XANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBF | null | 0.780453290420614 | MXPFIOFRZAWQCTHQNXHDVM | 66 33517 | A | C | D | null | -572022652 | false | null | null | 0.5988396823217189 | OWDJHCNWEFLHQSSDKFHQVLDLEYBCIQCYAOLFVXWCCSCLZTPSW | 67 33993 | T | C | N | null | -1738479899 | true | NHKVQVLIAPGDSPUGHRJ | null | 0.3625174745801645 | XKVQHAMWTP | 68 34102 | A | C | S | null | -1073982345 | false | RATSTVGMMNADVITTBCUBYQEBQREDVKQVRWCEFSWRGID | null | 0.4761978219475651 | XDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXHBDBIDKXPHF | 69 34166 | T | C | C | null | -222656654 | true | TFNBOQDFQOSGIMGDVIDDYSIARMFNRXIDQWTWJFLQPICWLAKPW | null | 0.43136002553398134 | GCNDAMPRDVDPCCTNNBCPCXUCJIDAGHNODZFIQAKSFLJFVUGJEAODATZBRRLBEQPWOKOXKFCDSZTVBKMHRHBLGOAIHY | 70 34592 | G | C | E | null | 1603058295 | true | ELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZ | null | 0.06608935143869987 | VHWTPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYIC | 71 34635 | A | C | F | null | 855592486 | false | YZEBMKVBMFPHNEL | null | 0.48250355081481844 | ADOFZLP | 72 34895 | G | C | M | null | -725609102 | true | PULQZMZEDELHUCDBTWQJJVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOFOLKCFROKHUCXYBSBMVOQ | null | 0.762356385268207 | EYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBB | 73 35605 | G | C | I | null | -1080358974 | false | AHNQKARYGFZFXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGA | null | 0.07293217555193243 | WRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUDGWKSKVEWCKVJHOOKWRVKHVYQCQKXUPYHKVOPSCJYNG | 74 36576 | G | C | null | null | -302854964 | false | TUTFKJQGNEXEKZSZQSANBMVAXRABRZWJEAEABTMFLNYIAJYPS | null | 0.9604138454200374 | null | 75 37125 | G | C | M | null | null | true | DSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLVFIECDHCJEXBPZTNNUGGNQRCFGCLCZLYWEJMYHNTTSXXCLCCPJRBGGEOPFR | null | 0.9511758825939518 | WDOSQMSWTUMIUHOZCYODCFABSKEDDMQDIIPGH | 76 37510 | A | C | M | null | -954131549 | false | AIZCPBATXXVHGDQXVTUTLCCUOEWSCGDKYTEGYYTNJQBYHCWLKKNLPUGLUZPEPQWRMM | null | 0.8239415352361015 | LGQIGRWFRRQPOKVFNLUBIYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBRRGH | 77 37548 | G | C | null | null | -604825087 | null | RKBEOERVKNQMYPBSUHNQKRZJLAUPUQUKFCWVILOIQRMKLWKVI | null | 0.5775280612131627 | CIV | 78 38242 | G | C | U | null | null | false | DCUY | null | 0.9168626208902441 | XMMRLQOTVYZPCMTXLUFJUZPNNKYYWJASSEOOTVOMHEQALCBNSOIUBJHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZXHGROHWP | 79 38813 | G | C | J | null | -1060008357 | true | EQEHHEFPDIISRJLHXNORWCADYZZKOKNDIJQWVENOKRPELATY | null | 0.5636726805530461 | YYLFMIRHTQKHVRPK | 80 39804 | A | C | O | null | -41179819 | false | VYKONTTVCOQNLCWSMQUCHQQLSVPYLUIDG | null | 0.5772578841976616 | GBDMNZOFIEPCPEANBDLHYXXFKJMJVZNNVTYOGCLPAAEWFHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGO | 81 40642 | G | C | null | null | -205879304 | false | ZIYXHYQTEPKZLFFDEOMBEYHZSGIQQETOE | null | 0.9696367861264819 | LCU | 82 41264 | A | C | K | null | 894088999 | false | TIMZCUTWALOTKNBHTORFBZWSPFYBDENAEMVIQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTID | null | 0.03688145467878867 | null | 83 41596 | T | C | P | null | -975534012 | false | TGTYHRYIKSBPMDLKYANUQQS | null | 0.7928325890103091 | W | 84 42029 | G | C | R | null | 310253242 | true | Z | null | 0.8539197522117524 | HRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSS | 85 42943 | A | C | T | null | 607159257 | false | PNUBIQSXJJIMPZRAQRPGGYYEALDQDPRHSPDBXOVSQDYPTSBOHIXPFDYCFBWFIJOYSGWE | null | 0.3788040778412717 | E | 86 43781 | G | C | C | null | -968348607 | true | EBEHXQZJGMJQZLJFYKYFBXNSVJTLWNHBEUMPEFUCIPJJNTHMLQTYJURKMRXYHDULOETRHFDJW | null | 0.5141137514398851 | EIWXLIDELTXVWYOGYCNFDSSXEVDGHUMRBMPSIPOELOIZALCSFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYUZUWYX | 87 44096 | G | C | N | null | 1877670182 | true | KORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVXJVCQCBJLYOLUVOCIFUEZZG | null | 0.0825834081697362 | XAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAPDDYSLBHDYOEY | 88 44862 | G | C | D | null | 292978956 | null | IHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCFSHJFAUVMFOZYUDRXIVXGA | null | 0.7571768837926776 | ZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVOYKQVRQYCM | 89 44995 | T | C | H | null | -1246496945 | true | EJGRUQMKXJIAKLYIUGICLVURGSXFJCAX | null | 0.9583422799198349 | UYTGFNUMWYCYFWSDUVNNDFUBOGY | 90 45159 | T | C | F | null | -144000269 | false | FDASKPMDBASJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHFLBWVRPVPBOAIVXCWSQVTZKNXGQLGWRORVMYY | null | 0.8822155345441609 | UQOCSO | 91 46091 | G | C | C | null | -1053492588 | true | FVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBH | null | null | OEWAOGVKFINKYIWQEGYAKQZXEGXNLLREPZFWVCTQTHORMWUADUERWVVTEILAAAWWEQGIIUK | 92 46592 | A | C | H | null | 175016072 | true | null | null | 0.8899784086868494 | GILVEEPCHTEGAXQHZZKHNCPGXUCFAOCDF | 93 47573 | G | C | F | null | -167495906 | false | CAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYC | null | 0.47299236005182366 | BGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPIFIBAHZYTPMRBMYNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYE | 94 47734 | G | C | V | null | -1734529840 | false | SGDLLYEDQGNLLGTKZUZKDQYKPUXKEQCQLI | null | null | HDHBHFFAYFMRFBHJSXUNGJITKBVEEPVVKXCSIXIBPDCIIEIJGPIYRYOKKJGWQFGMJFLHZAHXAQFYBZVVKGXESMQRCAXYFQXI | 95 48367 | G | C | O | null | 897370038 | true | ONOYSMVTAGLUXLTSFSUXWPAZCGDEZLOURIYYLWILVSASNXJPRPTZJUVXIXGKFSRYQHMBXLWGDWVBAGMPTPSDIRXOPHW | null | 0.5924396633188068 | QWBRYGDGRIKAMQVKJOHLFKMJVLVPEWSAPMKKJOCHYNCBMNZGHZDQIJCWDWAX | 96 48380 | T | C | F | null | -819807059 | true | GGNHMAZQXNOKCAAFLMKMAPJWDQJCYEVSBUBXDQEBUOZRNZMEYWNTPMJUZMH | null | 0.46904482548623505 | ACNSNCHTLNYRRGIOERSJAEXCVDZTHLXIASSVJIAGBAA | 97 49324 | T | C | L | null | -114418910 | false | null | null | 0.34282113100252154 | CSKRHFAOHYQEROWKFMU | 98 49535 | T | C | Y | null | 482703874 | true | B | null | 0.2767290379215618 | SEYOQUBORWBWITTSCTVWERUBUYFRQAZEOOVZJFXKRBSPXSRJHJMNUZVVGBGRN | 99 50401 | T | C | Z | null | 774077734 | false | CMKHHRQKKZSZXYRELEZOLEJKZFBXWMPOBPUCQ | null | null | UCKBVTXSFZIREOPSNYURKLHJCGP | DataFrame: SNP_G, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | A | G | null | null | 1325939940 | true | EHPBPZOQGQUUVRTPOVSQENPLWOJYBWQKVGUIHFQWUSYUOXQ | null | 0.7077105889551186 | LZORARZVMGTYMKSHHVGLPKFFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQ | 1 757 | A | G | L | null | 117313442 | false | AEGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGT | null | 0.4686717016077616 | | 2 1425 | T | G | S | null | -435642541 | false | LZADZBNDXVFRJHSDKMELB | null | 0.014055818452733182 | VZTXTZUNERDJENKLHKXYEMF | 3 1532 | T | G | V | null | -1468434616 | true | VOERCTXUKSWFGOETZUFCUBOPMIUMFYLGRXNUESRZQDSAYJBJPSXKJQEUTDCS | null | 0.69709331396258 | LKBKEYJKNTHRFDXBCCKBLVOSVEUQFWTNZKBFUZYSRXCKKTJLEUVPLGVIJEDMQLNYMX | 4 1626 | A | G | W | null | -1234394797 | null | LXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYO | null | 0.8197576174215644 | GCPTTGMGCXH | 5 2229 | A | G | P | null | null | false | BVKGYBSVUHJBXPLIAMKDDPVNZURFTUUMHFZGRNHENWGVS | null | 0.6755240114928003 | GZKGHDVQLAAKWGAUODCZNFMRXEWAMVAFWWRYGGOTPRSHRUNJEPJICSFDIBMCDIQEETUIGTS | 6 2620 | C | G | C | null | 895549918 | false | EVVOZPUTFMAKDPSHTHARUGHBUTZYQGKGJWBPOXVODCKIZGLHJCVWJPDTEPZKMCQAQPJ | null | 0.5314847873660685 | UBDVXEC | 7 3388 | A | G | F | null | -1423684069 | true | RSXBEQNWBEYBTRLL | null | 0.4296410560398164 | GUXHJXRXWJUZTUYIHWWHCPJPBKFZBMNESHHXQXSIOOTQBYAMZRFKJC | 8 3459 | A | G | F | null | -253191553 | true | ZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZW | null | 0.9132391862789185 | XGYVICKOAMFVVWSPTNCGQIEMXRMHTEIGRNS | 9 4247 | A | G | U | null | -1485168747 | true | ZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVUDHDFKUXNMTUYJP | null | 0.6893297325706504 | ICCOGOWJ | 10 4990 | A | G | E | null | -1344278569 | false | ZVCADPXDFSLLACZQMHEWEYJWJWQVRQKHZFHKBJCCBTE | null | 0.3814666823118418 | YLGVDHQHETXOLCKQWDSOOPYFTKEUSOFRMKCHTCDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJRCITOZLVPZQXPTCAT | 11 5033 | A | G | P | null | -906435933 | false | WKOWUCMTSWCUNQIYBBUBAZLCDFWYENCGBPHXSRWAOUSCYHUHUBGDWQETIVGKEMLVCLMYKFYMDAGCGBDIDZEEHKQQHTZFSF | null | 0.14823447916521082 | null | 12 5422 | A | G | S | null | 611624727 | false | KCXIEUXXTAZJWFGWAAEQHSMCZYQXQMRPTPFNAEJFNLPAVTXNBSMPGICZGSAAKUXYRDHISD | null | 0.3279608991497672 | VBJWDLZISLBBZZLAFIYNIVADIWAXPTXTVODSUOZTPWRVHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANI | 13 6184 | C | G | B | null | 1352524414 | true | WFGVIBKKGFWKBYZYNSNTPANSIGHYIAIT | null | 0.6572028989146969 | WFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIA | 14 6909 | T | G | T | null | 133184282 | false | RVWHHYVCLDTIMJZUEMQPCYGQYRZLRREBLEBHRQZRGEYWHCEB | null | 0.4213289063379432 | ENEUPMRUWTMUTOOPMQNUGIHZTBJTLIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIY | 15 7433 | C | G | M | null | -1265502299 | true | IQFMHOCPKFQIYOKFUCMTYDAXAWLEPFSOPHVFZUEFDEJNVDJVDIURYCMIRNPAQXDXXUOXPYASMSHLSHBDGHYGPIRBDKXCP | null | 0.11035167455949524 | null | 16 7665 | A | G | R | null | 1887352465 | false | | null | 0.1371791219940881 | KJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVRXGVGFTVBPELFIVQAXUJQ | 17 7797 | C | G | V | null | null | false | RJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVVZTNGEXPPRGWIJFGNMKTZUOIZVXNXQZFDEBETGNMTOBLZLZLRAB | null | 0.9692319994043119 | YQCNFNNIKYQTFEOEHQDCMXXGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFIN | 18 8713 | C | G | J | null | -715903371 | false | TWLRZOEZULNPISAMSOKH | null | 0.34853580300939946 | YRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYA | 19 9305 | T | G | F | null | null | true | USOSSEKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEFFMC | null | 0.7560910517289061 | CRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERP | 20 10073 | T | G | null | null | -2101849898 | null | null | null | null | FRTNVPWIOXYXTHTYNYBDM | 21 10618 | T | G | Q | null | -51540272 | null | null | null | 0.49606459663856894 | TSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORC | 22 10894 | C | G | C | null | 1733693192 | true | NXMJZATPEZATDQX | null | 0.046949657755137375 | QXOBMRHBACQREDBOCPCAQQYHVYMSZDYZLGDMWLBJJADJNZBAVO | 23 11121 | A | G | null | null | 1751860709 | false | PTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZIXJKJ | null | 0.3631296843997939 | UKFPBAFIBSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJS | 24 11149 | C | G | K | null | -1834436112 | true | null | null | 0.484931749035458 | UQMDKFXDIMSWQOFOJHETR | 25 11966 | A | G | X | null | -1524419715 | true | YPTCCKIUXDNSLHWUDRUSZUWXBVOUOUYTQUNPJDEXQEXRAAQDWLXMONCLSJNJFGBQRLQ | null | 0.84835007780834 | ZUUUVSTMVQTOLYAFTMUPXGOVUIDXQKLP | 26 12290 | C | G | Y | null | null | true | RDYIDIJFXVPQAKHPQEWWNHVSQLOTMXOVRAGOTTXTCDDIX | null | 0.7735367774957302 | DPVRSRMKLUCG | 27 13130 | C | G | I | null | -1865102407 | false | SEISSNATDXNUGEPQVNYFY | null | 0.023017356336717976 | null | 28 13221 | T | G | S | null | 1390831709 | false | YMTWLAEORA | null | 0.7488809318978249 | FHTNZLHHCQDWURHCU | 29 14019 | C | G | O | null | -713845357 | true | HDSTU | null | 0.5886779047530278 | PNIPFGNGFXOYMCPAZFZCSMNEYJGTFPZIVULMY | 30 14516 | A | G | B | null | -1931080334 | true | VBJPSNJTEHOWCPZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIOBZJSTXAOF | null | 0.5082776455915063 | DNN | 31 15400 | A | G | Y | null | 328926357 | true | HHFEMYPISXCFPBUDSQGLOBMZVVFL | null | 0.38678335946885756 | FFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELVHMRKLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHF | 32 15683 | C | G | K | null | 183067280 | true | MTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTG | null | 0.3756534924017908 | FJPGHPQTYOGNZQEAQKWLSYJMMVQSQTSRSIRD | 33 16331 | A | G | D | null | 1112100084 | false | TFCVMOPIMPXR | null | 0.3374087649226645 | QPOLYAIVYZQWDQPYHXA | 34 16772 | T | G | X | null | 2137995661 | true | WWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPP | null | 0.7380289283033604 | HHLJEBZYNSDERCMAIXBNIQRIEMDHOQFQNJQUXLEAMIG | 35 17379 | C | G | R | null | 1496757995 | true | null | null | 0.019616703487471354 | FHE | 36 17731 | T | G | X | null | -1043624329 | true | RFFF | null | 0.5595993590466001 | OUPEHPKRIHEMLGVFOGEXQAHOSMXAJGLFIOEWERSVVSAJWPPTK | 37 17904 | T | G | D | null | -493289939 | false | ODLHHZGLMBQAJLGCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORIHAGVGOEUXJCGASKRFLVSUERWOAEHZWLSQJATLMHBLMPHX | null | 0.9773485813955075 | DPHXFJUVINTKURUNTGXBCRIYGMXGLYBFIHLNCHAUOTOBMXBPTXHXONSYUZUFENSQQWZBPWGGGPCOY | 38 18369 | A | G | R | null | -1253111176 | null | null | null | 0.7531890445183089 | RWTPNJDWQYQEYTRZGFJYAWMGVKTNMFTZSOSWWVM | 39 18486 | A | G | M | null | -770412890 | false | WXWMONEKKHMGZCBTCVGNNODWGLUYIKDTOPVYHTILJJSHAQMNRSPVOKGXZIMBNHOHFIO | null | 0.6664746210351404 | WHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJO | 40 18925 | A | G | null | null | -913804880 | true | BFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVHW | null | 0.043241162334179184 | QAMTRPVRWFEGXRZRFDZRKFJOMCLPT | 41 19568 | T | G | H | null | 1045464768 | true | NGHXL | null | 0.5839079139597713 | KXKDGWDDGQCUCQXBOMEYSHEELIYNVOKDHIXALLPUSAKUWJOTDSNJKSFBXNRJBTUVDIAXJXSRAABIXF | 42 20322 | C | G | E | null | 848570807 | false | COUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCOERGUMY | null | 0.38030197361129114 | GCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIOQAEKWYKMIVESHZXXEALXRGCNLDFIXNZUPCZBSDO | 43 20458 | T | G | Z | null | 537861259 | true | CHTPHGWMYYPIWPAHZMSNEIIVXNKHDIKC | null | 0.856910720250756 | DFJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUY | 44 20483 | T | G | D | null | -999237583 | false | AN | null | 0.6592938128291357 | RZVVKWQMAPZOPDSXSKNPUUTRASSVAQLBASZKUOAQXSZYHTFPESQNYFKQEPAPSQQOQTKLVFPHTXHKJQVYAMKHLOWPTSYXUYRRGG | 45 21038 | T | G | O | null | -1947818663 | false | HLOFXYBMYZTQXJUFDEFEAIUVTSPDSNVBUBAJUXSDHKHHCKPSLSDCLUOIJTCPZTXKZAMMIUSGJP | null | 0.8482923893211213 | HLZDKCZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBS | 46 21113 | C | G | Q | null | 1411429955 | true | JUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZCLUGEUPAZPLXVMDCCMGQOMKTOVGLR | null | 0.7530274401586365 | HJFIMPPDVZXFSSIZVMSEVENLFRCLO | 47 21584 | A | G | V | null | -1818342568 | false | SRGLUGVEHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLBCINDKY | null | 0.46853294197429063 | GRQOOBAXHWOPEORODIVFVMHWOXP | 48 21719 | A | G | I | null | -1383251385 | false | QKIFLWJJTKVIJQLBOIDWBLDVMGPQODKOLTDOBNXUKJDPVJPSOBEOLCFOWQUAECVTRUGBQXLOOINVKQYHM | null | 0.7763475019948253 | TKJBNDZXHKWLUOGGPCVERAXXO | 49 21892 | T | G | L | null | -71968993 | false | VGKGUNPFZAZQHYKIPFDMLTTAXEEGFQ | null | 0.074609705848941 | LLNINAULGHKESUDFREILZDQYXXHJCL | 50 22050 | C | G | X | null | 447646330 | false | null | null | 0.5909248061156072 | TLWRADKLNSWY | 51 22447 | T | G | Z | null | 805335840 | false | KNTNRRWSWPOQJYEQWTHBQXHRKWBEPZCHIAWMAK | null | 0.47815630010183885 | OFHVRVJGCXKJZJDJCTJ | 52 23180 | T | G | V | null | 1324293778 | true | FNCFTYYJLZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVP | null | 0.9381800089060516 | MVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKKYEXOXXC | 53 23254 | T | G | I | null | -1980411442 | true | null | null | 0.9830382067879199 | JBBEKPQSARFFXUWDNIYWXADIYLUONTQMETNMCPYCW | 54 24179 | A | G | L | null | -276422557 | false | FNPVQXTQLDDLRNNWGPVDMZCMWALBHBZSDNPAZQNUZCBTVECALP | null | 0.34670610455245865 | FUGVSFLODMYZHILGJSYHWBHIFILQDC | 55 24714 | A | G | E | null | 936970436 | true | GPLJGZKGBBUEWZXQRUFHYOHQSASWDVQTYZFJUUCLNKWXYBNO | null | 0.3098816310163274 | I | 56 25595 | C | G | Y | null | -537826507 | true | URGROVHDGOLLVMWBULF | null | 0.0737720909558438 | BOOHSFOW | 57 25851 | C | G | X | null | 922901315 | false | CTREWKRHVHNGEOUBU | null | 0.22945500318593115 | NVRUEZJVGIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCKWPZQG | 58 26343 | A | G | I | null | -1441464962 | true | OPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHK | null | null | NPAYTHIPNCKCARBOCHEUDXOHXBODYUAKYGAHTLQELXYTJNNNPXLEGILTKJKBPLEWXUAUUEGQTK | 59 27229 | C | G | V | null | -1062308551 | true | RQSN | null | 0.05046136960776815 | KZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVTKNEZBOQHXUGGGGXVAUPORVJZTOJMMUPECSV | 60 27467 | A | G | H | null | -868387021 | false | XEYZYIMSZQHIQYVCYDEEBKTFLFFLUFTSGJBQGYPKJPUATVBRLNYHIUPECZ | null | 0.7236564509158407 | null | 61 27517 | T | G | I | null | 489970648 | true | | null | 0.3142292144917068 | VIVMCRZGOEXFHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGHDPVVEJASWCQDXMSCM | 62 28195 | A | G | Y | null | 24528819 | true | QAPH | null | 0.7707821899345295 | TAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMBTCCY | 63 28489 | A | G | null | null | -1933589312 | true | BDBLQWQTZGEERZXKCHCRVOGQDTZPZQRZIACBFBDNF | null | 0.6186961406973683 | ESSLYGJQVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNBHOVKEEOIDGCIPPPILVE | 64 29104 | T | G | R | null | 875444104 | true | null | null | 0.1565787402470541 | IVCNFXLMUOOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIV | 65 29455 | T | G | null | null | 980721615 | true | ZWKGGQCSTRTLHEEGLMSAWQTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEO | null | 0.4622995304977632 | QFIGJUIQDVGBK | 66 29962 | A | G | D | null | 1390914368 | true | X | null | null | VJBHDJDCOBKBBYHBFZDGHGIFVID | 67 30800 | C | G | T | null | -635403909 | true | YPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQ | null | 0.5203201732185717 | EXDSRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTA | 68 31637 | T | G | S | null | 987859431 | true | ZYNBPVPBWIETRLFHEHQZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZR | null | 0.7381053961388984 | JQQUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAV | 69 32437 | A | G | G | null | -762253484 | true | AJHIZFPZJVLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAGJEZKKCJCLUBGMVFISLNJICNTQK | null | 0.7473205676299366 | ZSBYHGCJJCH | 70 32539 | C | G | D | null | 2099808094 | true | BZVLBZNPJBGGWENLYYCJTPADCDDQOGHM | null | null | null | 71 33017 | C | G | F | null | 2049461907 | true | YDBVMBDDWTLH | null | 0.19308796469213663 | UXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEPQAOEVABQVGYCHUOTAEUPCXSMJBZN | 72 33318 | C | G | R | null | 1268480895 | null | FMWTOZMHCMXPFIOFRZAWQCTHQNXHDVMXZWXANQSZMAQJJKHDMASERCYWAWEEYUQ | null | 0.7337084268772609 | PNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDXZXVZZI | 73 33519 | T | G | S | null | -378279969 | true | CYAOLFVXWCCSCLZTPSWEZOISZGQEGOAGLBNEVBDRXIXKVQHAMWTPLWPNHKVQVL | null | 0.17906540472431376 | BFWBJNIIFDYZWDSDUABTFOWDJHCNWEFLHQSSDKFHQVLDLEYB | 74 33619 | C | G | J | null | 471210071 | false | CTJXHBDBIDKXPHFOTFRATSTVGMMNADVITTBCUBYQEBQREDVKQVRWCEFSWRGIDIFQAFZGNEUXCUGFHDUYGCNDAMPRDVDPCCT | null | 3.3798591568623415E-4 | AHKHSJBEALCXXDQOQGKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVE | 75 34464 | C | G | D | null | -856376734 | null | TFNBOQDFQOSGIMGDVIDDYSIARMFNRXIDQWTWJFLQPICWLAKPW | null | 0.28175891452276325 | DZFIQAKSFLJFVUGJEAODATZBRRLBEQPWOKOXKFCDSZTVBKMHRHBLGOAIHY | 76 34890 | C | G | G | null | -1152296235 | null | FINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGNNKLYMOPBGVKKEECTYFDRMGCEZDPHFWRRB | null | 0.2975479182293854 | RVHWTPPXLDCEUJVNDMTNWIVWAUWXGGLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTB | 77 35394 | A | G | H | null | -1917945158 | false | QJJVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOFO | null | 0.6775121531908064 | CQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWDKEYBUTFMOPXQHBHWYXRNQZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCD | 78 36217 | C | G | Y | null | 1000815122 | false | HNAJEWWRVWIZSGQPVZ | null | 0.8305474834928933 | AJLIVJLLIV | 79 36345 | T | G | Y | null | -820581671 | false | QKXUPYHKVOPS | null | 0.22862666220394212 | LYWEHVGXFPHAAUDGWKSKVEWCKVJHOOKWRVKHV | 80 37207 | T | G | Q | null | -1438935715 | false | XRABRZWJEAEABTMFLNYIAJYPSXDXCZBQOPQMSFJNWUVWDOSQMSWTUMIUHOZCYODCFABSKEDD | null | 0.7864728771537823 | FXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANB | 81 37973 | A | G | null | null | 162272412 | true | ULYYCBUUEXHGUEQLVFIECDHCJEXBPZTNNUGGNQR | null | null | NRWSUYVVSOYHJJNH | 82 38001 | C | G | J | null | -458414969 | false | GEOPFRVIOUHAVSYGXMMWZEJTKLGQIGRWFRRQPOKVFNLUBIYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYRXBCQMBFCCJLLATENBR | null | 0.35702342227267614 | XXCLCCPJ | 83 38376 | A | G | B | null | -1025096135 | false | BYHCWLKKNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOERVKN | null | 0.1274717880636046 | DQXVTUTLCCUOEWSCGDKYTEGYYT | 84 39232 | T | G | Z | null | 134823712 | false | FJUZPNNKYY | null | 0.9240522105340442 | UKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMT | 85 39422 | T | G | M | null | -206113243 | false | QBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZXHGROHWPSYMDCUYXFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDII | null | 0.4713315365446201 | NSOIUBJHU | 86 39588 | T | G | A | null | 522904370 | false | GCLPAAEWFHXXHZSKILOGWYTQNLEWXWBHGEOLXJAFLXULPZGOHHPVYKONTTVC | null | 0.909186193288043 | NDIJQWVENOKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEPCPEANBDLHYXXFKJMJVZNNV | 87 40544 | T | G | H | null | 955552733 | true | EYHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTK | null | 0.9599747857646441 | LUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZLFFDE | 88 40793 | C | G | B | null | -1835659221 | false | DLKYANUQQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAHSXGQAOJVNMALPLDEWAFVWFQMSSRMHZWJVVUOM | null | 0.19161888431855756 | IQZBDVRTNVQWSKUSZKIYRSHCZHDRLFULNBVZYMWMCWSNATKMXIBTIDOMJAMIHYVSZPXVTNOEXWQQVTGTYHRYIKS | 89 40894 | C | G | K | null | -1649622296 | true | IJOYSGWEIOFGIUXBMYTCTJJQZLBEI | null | 0.4565401967896783 | UBIQSXJJIMPZRAQRPGGYYEALDQDPRHSPDBXOVSQDYPTSBOHIXPFDYCF | 90 41110 | A | G | Y | null | 998107454 | true | null | null | 0.173068587122447 | SSXEVDGHUMRBMPSIPOELOIZALCSFUBICUYVGZRUCWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYU | 91 41624 | C | G | Z | null | 1957246546 | true | null | null | 0.8627830350098948 | JFYKYFBXNSVJTLWNH | 92 42362 | A | G | J | null | 1654471166 | null | EYFHHKORYXGSGMUZOCDLFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBUVDYUVX | null | null | LQTYJURKMRXYHDULOETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAPDDYSLBH | 93 43223 | T | G | L | null | 866749522 | true | VRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDOBFFIBXIWYNWPONALNRDOUUIZOZANCF | null | null | EZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNVOZYPQRDQXSFUDEHXTGNQQDVBKIEZBVIVO | 94 44167 | A | G | D | null | 131702367 | null | null | null | 0.8489882460239491 | GAVYBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFWSDUVNNDFUBOGYSZGEJGRUQMKXJIAKLYIUGICLVU | 95 44535 | T | G | K | null | -147373767 | true | WVRPVPBOAIVXCWSQVTZKNXGQLGWRORVMYYKPYAMAZCXGYJCAL | null | 0.8881914112592243 | XONPKQUQOCSOLGKFDASKPMDBASJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYH | 96 45355 | A | G | V | null | 563465342 | true | XEGXNLLREPZFWVCTQTH | null | 0.7018378621643794 | WQEGYA | 97 45645 | C | G | E | null | 1512920697 | null | QGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEEPCHTEGAXQH | null | 0.193414500648447 | | 98 46622 | C | G | F | null | -597676374 | false | PVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVRHGNDOZBRLYNCQJNXKGTZFGXFMSSZQVMYCFSVU | null | 0.9002014226502575 | NIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPIFIBAHZYTPMRBMYNJMWKIS | 99 47565 | A | G | A | null | null | false | AYFMRFB | null | 0.6745896400668322 | null | DataFrame: SNP_T, size: 100, current index: 100, memory: 63.4 KB Field types: ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= 0 130 | A | T | null | null | 1325939940 | true | EHPBPZOQGQUUVRTPOVSQENPLWOJYBWQKVGUIHFQWUSYUOXQ | null | 0.7077105889551186 | LZORARZVMGTYMKSHHVGLPKFFVDPCDVBXJSQCOQZPXBTJGJYGUPJFGVNNNHQUDVOYXEBBPQ | 1 757 | A | T | L | null | 117313442 | false | AEGILYUTDVAIFEOZYGHKARCZKVIZSFEDWAATTXBGT | null | 0.4686717016077616 | | 2 1425 | C | T | N | null | 38453561 | false | SSYJWT | null | 0.5214943036897558 | TZUNERDJENKLHKXYEMFMQTLZADZBNDXVFRJHSDKMELB | 3 1611 | A | T | K | null | -1179185161 | true | BLVOSVEUQFWTNZKBFUZYSRXCKKTJLEUVPLGVIJEDMQLNYMXTSWVOERCTXUKS | null | 0.7648226592427628 | THRFDXB | 4 1775 | G | T | B | null | 1962816760 | false | FGCPTTGMGCXHAYYLXAIMKCTVQNSDPJFZMDVOZIAHTCCKYPNKJELMEJCCCBAXESFLUYOJP | null | 0.8837630591185496 | YLGRXNUESRZQDSAYJBJPSXKJQEUTDCSYARPMLCBJQVLWO | 5 2451 | A | T | K | null | -1816709355 | false | SVUHJBXPLIAMKDDPVNZURFTUUMHFZGRNHENWGVSRDGKVKARTBDCKYMOCEFUBDVXECTMHEVVOZPUTFMAKDPSHTHARUGHBU | null | 0.8398659092547522 | KGHDVQLAAKWGAUODCZNFMRXEWAMVAFWWRYGGOTPRSHRUNJEPJICSFDIBMCDIQEETUIGTSZJPBVK | 6 2982 | G | T | X | null | 1274612112 | true | PJPBKFZBMNESHHXQXSIOOTQBYAMZRFKJCJOARSXBEQNWBEYBTRLLBJTOPXYAVBUFKFXCYZJXGYVICKOAMFVVWSPTNC | null | 0.030443143763536518 | GLHJCVWJPDTEPZKMCQAQPJUIKUDWOJEACFAGHAJUAGUXHJXRXWJUZTUYIHW | 7 3126 | G | T | I | null | 590931301 | true | YMAVCOMBUUTBXWQKICCOGOWJJGUZZCQWQYUQQTKMUBBNRIJOSKIGWEOJWYMVUDHD | null | 0.7618362942935621 | ZAOLSBMGEKFBIGQUKJLUZTUDNVRJBQVPCOIEJRXLFNYGZGASEUGGPSBVAVQAISGEPOGDMTZPNIWMONLAETYPXXUWRHTWRBBIFZW | 8 3391 | C | T | Y | null | 1797260009 | false | TOZLVPZQXPTCATSLLZVCADPXDFSLLACZQMHEWEYJWJWQVRQKHZFHKBJCCBTEBDJKRNQUULWPMBXF | null | 0.7131587768334366 | ZVEUUGMRBHYLGVDHQHETXOLCKQWDSOOPYFTKEUSOFRMKCHTCDASCZBWYYWFGVFTKARFUSEWVKGOKVCBJ | 9 3483 | A | T | M | null | 1715384389 | true | GB | null | 0.2693438403479881 | IYBBUBAZLCDFWY | 10 4060 | C | T | Y | null | -1903781789 | true | WAXPTXTVODSUOZTPWRVHQMFXCKFYTNWGKENKRJLZXOPKYMRYUQSVPFUZGDDMXLOBWQRTANIBWUKCXIEUXXTAZJWF | null | 0.6290131566875504 | WQETIVGKEMLVCLMYKFYMDAGCGBDIDZEEHKQQHTZFSFVYKAZIZWLITSIBGVBUMVBJWDLZISLBBZZLAFIYNIV | 11 4316 | G | T | Q | null | -2141120660 | false | RDHISDKIKEXJRDMJIBLOBLSKDWFONVIKAEYDXPOHDKZTCWJEGQOFABQPIKEPQYVZJDJKZSAFIAAHSWFGVI | null | 0.32240371096877196 | FNAEJFNLPAVTXNBSMPGICZGSAAK | 12 4615 | G | T | S | null | 963269520 | null | GHYIAITLYHHFQBGA | null | 0.839962533275974 | null | 13 5362 | G | T | N | null | -787565319 | true | LIFFBHNWHXBLGYGCTRNXIWGFMDRYLLISWKNUEIY | null | 0.4741834740049925 | TMUTOOPMQNUGIHZT | 14 6227 | G | T | V | null | -649702826 | true | FQIYOKFUCMTYDAXAWLEPFSOPHVFZUEFD | null | null | ZUEMQPCYGQYRZLRREBLEBHRQZRGEYWHCEBYNFJGRCAUIVMXQXRDXKNXIQFMHO | 15 6867 | A | T | R | null | null | true | GFTVBPELFIVQAXUJQEJUMISRBUUMGFVSGRPTS | null | 0.14244474729162748 | AQXDXXUOXPYASMSHLSHBDGHYGPIRBDKXCPUUXUBSELUPRBRXWHBLPLKJKWNFXJFPCSFTBCOGQQMIQABGWIONUOBWHKOXRNGJGVR | 16 7334 | A | T | Q | null | 1823663894 | false | null | null | 0.7773190912838853 | DCMXXGNLSSWJIIPEMJKSOVNOHLLTOINNESNDAMNPABXDMDFINZHSRJSFVGSMSRVAWKXGXIITFREYQHUQLXZIVV | 17 7389 | A | T | G | null | -364148997 | true | UZSKCFJZPOWKBQYRYSGVHXBWNYGWXWVNWBBASTFMWIMPLAKWIQLCYASAYTWLRZ | null | 0.32665530046016367 | IZVXNXQZFDEBETGNMTOBLZLZLRABIW | 18 7885 | G | T | A | null | -1236886794 | false | EKKLYORBIPYRJUDBIDCVFQZTUNWCGVSDIDIZXMDDAKTUAODSJAAKKPEEFFMCGPCRPYIKDMFUPNFRTNVPWIOXYXTHTYNY | null | null | ACOJSAMYSFHFDOWTMCRLMYTTAVQCBRJRCXBFMMMEUYDPQEFKJEZLOHQRTHZUBYWZORERPCZFUS | 19 8210 | G | T | J | null | 1689625755 | false | CAQQYHVYMSZDYZLGDMWLBJJADJNZBAVOB | null | 0.9615764869110734 | TVATSQRUUCAKFROSNQESIETCBYNCQKJDXWIHQVGONRRSGZRYORCGVCJXSQSUFGVPCCKOEMOWWQXOBMRHBACQREDB | 20 9034 | G | T | Z | null | -1592120268 | null | BSUFQUKPWLPNFFRJWMCUWIXPNTHHZZHADJSGVZPTFTXFBASLXSEJEJNCMXPXKEAEIXRRTZWOVCTBZXSFZEKHHLXZ | null | 0.9695903512350196 | XMYLARYBPGPAPLSOYBUKFPB | 21 9162 | C | T | I | null | -2060828797 | false | BHOJWCYZUUUVSTMVQTOLYAFTMUPXG | null | 0.8728101636899569 | LYINUQMDKFXDIMSWQOFOJHETRGRNTRCEOBDT | 22 9472 | A | T | E | null | -831335741 | true | TQUNPJDEXQEXRAAQDWLXMONCLSJN | null | 0.8662825730007576 | IUXDNSLHWUDRUSZUWXBVOU | 23 10001 | G | T | F | null | -1054289511 | false | PQEWWNHVSQLOTMXOVRAGOTT | null | 0.9908923980683975 | OHSRXWUDPVRSRMKLUCGTCFRDYIDIJFXVPQ | 24 10314 | C | T | J | null | 1831784974 | true | EVWJSEISSNATDXNUGEPQVNYFYDKVSQ | null | 0.934190982794041 | IGP | 25 10483 | A | T | P | null | -1786016068 | null | | null | 0.8711382334857547 | NZLHHCQDWURHCUCFMYMTWLAEORAANJSPJFRKXQOSMDDYBVPNIPFGNGFXOYM | 26 11278 | G | T | null | null | 133844865 | true | GBCJUBZXLDNNXPCVBJPSNJTEHOWCPZLVRQWDHOYTRBOKNAZOGGLAHUDGHSLYCNLRITIO | null | 0.587222927544775 | LMYLCDHDSTUTUSRRDM | 27 11479 | A | T | H | null | 758453846 | true | KLLCGOGZFFHLCYGTPEMXGDGHWYUWKWRPOEUAAVSFEFMTYWHFBGMHHFEMYPISXCFPB | null | 0.2292387309942473 | YYHZGVIWJFFVQXUOBTPVATCWTSSEDAGAQRDSPMURZGGYMIELV | 28 12253 | C | T | V | null | 1878366945 | true | TSRSIRDVTNMTRXPBHFNJSKHXWIQWUUWZXQFUVXVAIJYKTFJOCXPZVUPWVJCUHEBBELGXUEAFPGVRPBBCUZUTIRNMBZQIBPCTGQ | null | 0.3397356585960569 | XUCJTEKJBHRBKIFJPGHPQTYOGNZQEAQKWLSYJMMV | 29 12723 | C | T | R | null | -301506404 | true | AIEIOUMPNXSABCPGVHHLJEBZYNSDERCMAIXB | null | 0.9176030675129526 | POLYAIVYZQWDQPYHXAJOITFCVMOPIMPX | 30 13204 | A | T | F | null | -117338812 | true | CUDRTBUEEBJFHEBUIHMNHWIMEDVXAMQMWWROUPEHPKRI | null | 0.9947358996478333 | EAMIGIACWWMBNSJUJALKXXPVHUIRPUEIYKIREKZGFGBEAADUUMWYHAEHMXFNGJXNTYDVSJEYOUPPNBVRP | 31 13287 | A | T | Q | null | -705793227 | false | SAJWPPTKAZQRFFFVRYSYVBDJNEDJSAMHXJD | null | 0.17122732654589223 | JGLFIOEWER | 32 13566 | G | T | null | null | 1434911494 | false | BPTXHXONSYUZUFENSQQWZBPWGGGPCOYIRUODLHHZGLMBQAJLGCZOUMEVVTADJIMOLIXKBVOTCBFCXQXRORI | null | 0.14076882752881215 | RIYGMXGLYBFIHLNCHAUOTO | 33 14191 | A | T | C | null | null | false | XLKKCJCRPRWZMRUHRDHRWTPNJ | null | 0.010961659191682793 | VSUERWOAEHZWLSQJATLMHBL | 34 14618 | G | T | null | null | -247877827 | true | EKKHMGZCBTCVGNNODWGLUYIKDTOPVYHTILJJSHAQMNRSPVOKGXZIMBNHOHFIONKJDLE | null | 0.5181463969519201 | VKTNMFTZSOSWWVMRPXNYNXLQTNZOAMMXFPMGJWHVBMIISKYUETNMSZMQMOXJFESSUVIOIQBGIVNRJOMZVWXW | 35 14885 | C | T | B | null | null | false | PDSDLDEGQHTUUHBYSKXKDGWDDGQCUCQXB | null | null | TRPVRWFEGXRZRFDZRKFJOMCLPTTEKBFTTAFFZUAIURYMGGUWLAUKSTJQACGSGRAMCVDIGDQCKOTDGCQOGRHZTCYBZORDEBIMVH | 36 15081 | A | T | N | null | -189425403 | false | null | null | 0.6698811404834022 | ALLPUSAKUWJOTDS | 37 15243 | G | T | V | null | 1510802014 | false | MQFNGHXLSOEAJKVRSXRELHZXDYXGCQDQQEEPBAXJKYOLRXTHOYVQIXLQNZJEFFEIO | null | 0.18208131838996633 | RAAB | 38 15317 | A | T | S | null | -1884692267 | true | UMYYDMVTOZFRCDZWFXPYAZDFJJHTKRYJFYFQLAKZUSSPYAPSWBQETRQQLRESQTQPMYWUYT | null | 0.7400498644327095 | XRGCNLDFIXNZUPCZBSDODUKCOUTKXIRBMYCWNUDNNGDBTLFEYVTQKTOGHTWJCOISHZBCO | 39 16226 | C | T | null | null | -1019440614 | true | | null | 0.3173623047846922 | ZMSNEIIVXNKHDIKCPEZAYOPAVIWWDSBKGVIERZVVKWQMAPZOPDSXSKNPUUTRASSVAQLBASZKUOAQX | 40 16755 | A | T | F | null | -753227527 | false | null | null | null | QQOQTKLVFPHTXHKJQVYAMKHLOWPTSYXUYRRG | 41 16899 | C | T | C | null | -1075446186 | true | DKCZJYFXCWGKYBDKQCOPZCRZCATNTUFFAAFWFFSVSBSJYSHLOFXYBMY | null | 0.35504209319484414 | THKU | 42 17272 | C | T | T | null | -17667716 | false | CKPSLSDCL | null | 0.1475002958851096 | UBAJUXSDH | 43 18030 | A | T | Z | null | 581523007 | true | null | null | 0.41839959918022074 | JPTSJDTKELPQHQDIEBEXBHJFIMPP | 44 18221 | G | T | E | null | null | true | EUPAZPLXVMDCCMGQOMKTOVGLRHFHNQMBPQZMVYTJOPTTGRQOOBAXHWOPEORODI | null | 0.44806773421618973 | LOJVRJUUTROOOTNOWPKPFZRWZGJGDREVYFYKPCKEHLAWCLGIHAGDZC | 45 18256 | G | T | W | null | 578554250 | false | DKYLGDKTYCLAZVICTNRXSDTKJBNDZXHKWLUOGGPCVERAXXOAVLQKIFLWJ | null | 0.04624360636075597 | EHLXDQTTSIJFGCAHRXFUYRWJHGVJZCGXHLBHRLB | 46 18855 | C | T | D | null | -274592687 | false | CVTRUGBQXLOOINVKQYHMPAUEYVOVQMQOLJLYKIUWLLNINAULGHKESUDFREILZDQYXXHJCLAUMVGKGUNPFZAZQHYK | null | 0.295082569110763 | PQODKOLTDOBNXUKJDPVJPSOBEOLCFOWQ | 47 19093 | G | T | E | null | null | null | XHRKWBEPZCHIAWMAKDQYRBPZBSVDVUVMAOYDMVWKCQOPWFYZOOPPWEJLJAXEAFQWFNTTHBRNQFDCVJHOASYFSNYLHTKK | null | 0.6326350077170896 | LBBHXRCJVLXRLFKYGSTLWRADKLNSWYQIJLEMSYPRLUMZYSMRUPTOFHVRVJGCXKJZJDJCTJBMSKNTNRRWSWPOQJYEQWT | 48 19309 | G | T | C | null | 1012923803 | null | YLUONTQMETNMCPYCWDFLSHSINSSHZSFLFTPM | null | 0.9752018491920234 | LZYMGNTENXHJSBPOTDAUKOTRZLNYAYGFBKVSHHTGIFDDJOXULGGPJTGVPOEXCNXBDIORIOEWPXUPJBBEKPQSARFFXUWDNIYWX | 49 19944 | G | T | D | null | 1859314744 | false | | null | 0.057459817044769324 | JS | 50 20293 | C | T | F | null | -1573766194 | false | AL | null | 0.6628424521893181 | LDDLRNNWGPVDMZ | 51 20824 | A | T | N | null | 2003236284 | false | SASWDVQTYZFJUUCLNKWXYBNO | null | 0.11372914407281842 | CALPBVRYGCTNGWNEHDQFNZRIJLEGPLJGZKGBBUEWZXQRUFHY | 52 21705 | C | T | Y | null | -537826507 | true | URGROVHDGOLLVMWBULF | null | 0.0737720909558438 | BOOHSFOW | 53 21961 | C | T | X | null | 922901315 | false | CTREWKRHVHNGEOUBU | null | 0.22945500318593115 | NVRUEZJVGIUWTXHUDCOQYZFPZLVEDGKFHPAFTMIKDCKWPZQG | 54 22453 | A | T | I | null | -1441464962 | true | OPMKWBRCLYRXXABQJIXFRTNVCQIBZZQJAARJSGJOTHK | null | null | NPAYTHIPNCKCARBOCHEUDXOHXBODYUAKYGAHTLQELXYTJNNNPXLEGILTKJKBPLEWXUAUUEGQTK | 55 23339 | G | T | T | null | 279611636 | false | ZBOQHXUGGGGXVAUPORVJZTOJMMUPECSVBKGRQSNGDQGTNSIEYGJHVFJLXUAKKXEYZYIMSZQHIQYVCY | null | 0.8387849487433041 | CKZHXRLNAKXKBXLTNWDOSJTUIFRSBDIILLCGQGDPFJVT | 56 24316 | C | T | U | null | -651937236 | true | SWCQDXMSCMKQSOUBBBVBJRYNYSLDLERQTAWTAOUNAYMHGNEWNYWEDDDCHLHPAMMBTCCYEASQAPHIVZCCVY | null | 0.7942255149817324 | GYPKJPUATVBRLNYHIUPECZERSOMBIFLOGISAKLNHGVIVMCRZGOEXFHZBLHXADISRKTIKXYMHTGDHUFIIDBYCTEUXSGVRGHDPVV | 57 25184 | A | T | F | null | null | false | KEEOIDGCIPPPILVEHYJBDBLQWQTZGEERZXKCHCRVOGQDTZPZQRZIACBFBDNFDLHOOWLPE | null | 0.34530944605958225 | QVJSBTUZISTJZGJCDRPCNJCMTEKILBJSYNPCHNB | 58 25822 | A | T | V | null | -1785329143 | true | | null | 0.24416744446199234 | OOKIRSCDIVMKWMUBVINKPGRFPAXZAQCYNCFHHGTIVJGFPETBDVJSQBAQBCZIHQFIGJUIQDVGBKHI | 59 26566 | C | T | E | null | 675825180 | true | X | null | 0.4931563909493777 | QTGULKMUEBFERFVNVUBWFASDAKTYBUSRKBLDDWEOFLBRGUYZKDJNGXPPHVJBHDJDCOBKBBYHBFZDGHGIFVID | 60 27404 | C | T | T | null | -635403909 | true | YPFVQNKFDAHZSZPMHFLCLYQVZEKQBOLPHTQ | null | 0.5203201732185717 | EXDSRBZJGXWOWHUPIIIRKVSTHEUQCNVKQSNISLICNKDKOMRLKHNSPEVNUIRNSROCBCLTA | 61 28241 | A | T | Z | null | -1067906708 | true | QZLKAWOOVRGFJQKVJRPQASSROBWVZDJKOCRCYMTXUBTDHUANHSZRCNCFBCWIZCNXGDEIMCPBZSB | null | 0.5796962976262425 | QUKIIAPGADLZGNPSYEUDVAJRCRBBKCGZALLRDVNCSQBWFUIKAVQQYZYNBPVPBWIETRLF | 62 28271 | G | T | A | null | -1835503465 | false | null | null | 0.620329573157975 | JVLKFQHDWSTGPETVKXCXKWHSIMDNCPPXMPDZVJUAG | 63 28638 | A | T | I | null | 513821018 | true | WENLYYCJTPADCDDQOGHMOVVSZJDCDAWFEBOBSMKUXNYIRQCUBYGFSIMFYUAOECXQBGSKUSCEPQAOEVABQVGYCHUOTAEUPCXSMJ | null | 0.013355374167080325 | TQKOCGCXSKCEDPKOLOTGKOBZVLBZNPJ | 64 29017 | G | T | B | null | -1621505252 | true | WCWVCQRXQVDNPNIWYMDJFTUBBMZZFWQYCCSALZJMOLGKLDX | null | 0.4998322634463337 | N | 65 29104 | G | T | null | null | -339319550 | false | XANQSZMAQJJKHDMASERCYWAWEEYUQTEZZDPNUQYPSLZEVRQGBF | null | 0.780453290420614 | MXPFIOFRZAWQCTHQNXHDVM | 66 30014 | A | T | D | null | -572022652 | false | null | null | 0.5988396823217189 | OWDJHCNWEFLHQSSDKFHQVLDLEYBCIQCYAOLFVXWCCSCLZTPSW | 67 30490 | C | T | L | null | -1193426399 | true | PUGHRJDV | null | 0.15722460663127813 | XIXKVQHAMWTPLWPNHKVQVLIAP | 68 30809 | C | T | null | null | 1370291323 | true | GKMWQYUNAVYXZLMSHZQOQAOMXYIBMPQHOMYJBNEODMVEEFBCTJXHBDBI | null | 0.9614556068091539 | D | 69 31450 | G | T | T | null | -100602925 | true | UXCUGFHDUYGCNDAMPRDVDPCCTNNBCPCX | null | 0.8565876795373273 | ADVITTBCUBYQEBQREDVKQVRWCEFSWRGIDIFQAFZ | 70 32094 | G | T | O | null | 483122282 | false | ARMFNR | null | null | SFLJFVUGJEAODATZBRRLBEQPWOKOXKFCDSZTVBKMHRHBLGOAIHYNPLTFNBOQDFQOSGIMGDVIDD | 71 32993 | C | T | P | null | -1784374440 | false | ULBRVHWTPPXLD | null | 0.9767443437342928 | WYRVDDYVZKYHE | 72 33077 | G | T | I | null | -600964577 | false | YMOPBGVKKEECTYFDRMGCEZDPHFWRRBUMUSFMSQDSIHADOFZLPCQVYZEBMKVBMFPHNELKLQQTKDBYWMMMLOMWD | null | 0.2571020272807142 | GLUXIOZZRBJJIUCGRJFDBUXNZCRQNAITMRTBYICFINELWGCHTRZWHGPSJQDOVVDARUZRDFCROZGN | 73 33615 | G | T | Q | null | null | true | ZTIPAXUATFOMJWEUBBMYDPULQZMZEDELHUCDBTWQJJVJXWLRQHRDMENXXUODKYHXTZMYUWDVLMXUWUJVJQOF | null | 0.6377115707798058 | null | 74 34193 | G | T | X | null | 1935647750 | false | SKVEWCKV | null | 0.454310429551415 | QAJLIVJLLIVKIMHNAJEWWRVWIZSGQPVZGJVDJEEACEUAJYIQKIXRLLYWEHVGXFPHAAUD | 75 35108 | C | T | Y | null | -621301019 | null | FXQHIJKMWIEKPDQQBBTBRGBKZFMCMBEVLOGANDMKAZJMHLLIYBKTOJGDTUTFKJQGNEXEKZSZQSANB | null | 0.987225742581265 | UPYHKVOPSCJYNGPAHAHNQKARY | 76 35674 | A | T | E | null | 1240918155 | true | WUVWDOSQMSW | null | 0.3960450868212172 | LNYIAJYPSXDXCZBQOPQMS | 77 35933 | C | T | Y | null | 1963623780 | false | FGCLCZLYWEJMYHNTTSXXCLCCPJRB | null | null | KEDDMQDIIPGHVZBDSZEWNRWSUYVVSOYHJJNHKMNULYYCBUUEXHGUEQLVFIECDHCJEXBPZTNNUGGN | 78 36231 | C | T | H | null | -598651890 | false | null | null | 0.5231217315120074 | MWZEJTKLGQIGRWFRRQPOKVFNLUBIYFBAUNPDVYDOXEKTMBUOBZBKLTJMSURAYR | 79 37137 | C | T | T | null | -560927886 | true | CCUOEWSCGDK | null | 0.9765723991647748 | PSMAIZCPBATXXVHGDQXVT | 80 37895 | C | T | Q | null | 1433331585 | true | YPBSUHNQKRZJLAUPUQUKFCWVILOIQRMKLWKVIMPSQGQQNCWUOOODFXZXMMRLQOTVYZPCMTXLUFJUZPNNKYYWJA | null | null | KNLPUGLUZPEPQWRMMWVETGLEKPBVHLRZZCIVSXZRKBEOERVK | 81 38645 | C | T | A | null | -64922945 | true | ROHWPSYMDCUYXFUMVUZPPYMJWXLTJFYYYLFMIRHTQKHVRPKBIKEQEHHEFPDIISRJLHXNOR | null | 0.10626181009846947 | UBJHULZAQBBRFRJGAZJFYSHSIBGCAUOFFYVSTFHZ | 82 39497 | A | T | D | null | -804208911 | null | OKRPELATYNBXBIXFNZNJOPDWFPVEGBDMNZOFIEP | null | 0.9198539785480527 | null | 83 39573 | C | T | X | null | -659042873 | null | NNVTYOGCLPAAEWFHXXHZSKILO | null | 0.481661024928565 | null | 84 39849 | G | T | B | null | 1854162940 | true | null | null | 0.5584640948881829 | AFLXULPZG | 85 40136 | G | T | O | null | 679572108 | false | YHZSGIQQETOESYPHFJTNZIUKYPRCYFYRJTIMZCUTWALOTKNBHTORFBZWSP | null | 0.6626593894044713 | QUCHQQLSVPYLUIDGCGAOOIWYYNIQHONRKHLCUIXZZIYXHYQTEPKZLFFDEO | 86 41021 | A | T | Q | null | 922545529 | true | ZYMWMCWSN | null | 0.511942583705699 | VQWSKUSZKIYRSHCZHDRLFUL | 87 41279 | G | T | null | null | 768786455 | false | BPMDLKYANUQQSBHHFNJMSBKHRYXQMXNCHRFXSPGAOWMOMIAHSX | null | 0.24633161141195914 | VSZPXVTNOEXWQQVTGTYHRY | 88 41405 | C | T | L | null | 364863895 | true | VSQDYPTSBOHIXPFDYCFBWFIJOYSGWEIOFGIUXBMYTCTJJQZLBEIWXLIDELTXVWYOGYCN | null | 0.40638145332991804 | FQMSSRMHZWJVVUOMBPVLGTNWXGFKDELXIPNUBIQSXJJIMPZRAQRPGGYYEALDQDPRHSPD | 89 42360 | G | T | M | null | -149554186 | true | CWQPBGBNWRLKDJYERMIINDEAFXIIBLWZYU | null | 0.902379120727297 | OELOIZALCSFUBICUYVG | 90 43097 | C | T | H | null | 1619482067 | true | FUCIPJJN | null | 0.4557069798817662 | QZLJFYKYFBXNSVJTLWNHBEU | 91 43250 | G | T | M | null | 1039840912 | false | null | null | 0.43826401782238567 | OETRHFDJWPUVXZZYKIRENGVZILQTXAGJUNMNBZSMODRXZBYFDZCXTCGTGQRTIAPDDYSLBHD | 92 44012 | A | T | S | null | 1153307754 | true | UVXJVCQCBJLYOLUVOCIFUEZZGWQFYSTPSRJHDKBDZEZWMWLJVVMMXUVVGHNV | null | 0.17365479912109194 | LFZWPTVNSBZCISAQEHRFONPWQQXCDPSXOBU | 93 44468 | A | T | F | null | null | true | IBXIWYNWPON | null | 0.7436084607961213 | NQQDVBKIEZBVIVOYKQVRQYCMJAMIHTRDJLBERTXDYQZAPBEVZQOPJLNBCCVLDO | 94 45360 | A | T | O | null | 1583899124 | true | IVXGAVYBXSVREXJZHHTSPHAHLUYTGFNUMWYCYFWSDUVNNDFUBOG | null | null | JFAUVMFOZYU | 95 46156 | C | T | K | null | 1142428620 | true | null | null | 0.2676287457935427 | IUGICLVU | 96 46524 | G | T | Z | null | 1090886060 | false | SJYUSZRTKHCHMKEYIGEGGZUDIMTLCOYYXOYESTZVLXIYHF | null | 0.6704205555944355 | WXONPKQUQOCSOLGKFDASKPM | 97 46865 | G | T | V | null | 1657219698 | false | WQEGYA | null | 0.6009573425303274 | ZKNXGQLGWRORVMYYKPYAMAZCXGYJCALSCGAZOEWAOGVKFIN | 98 47093 | C | T | E | null | 653352657 | true | WUADUERWVVTEILAAAWWEQGIIUKQTGFVSEPVTJSEWOEWXDUVMQMTIHNQPTSFSEQDBHZBNESFTNMMBHTCZRTQJGILVEE | null | 0.08956523678408113 | QTH | 99 47588 | C | T | Z | null | 1873761820 | false | YNJMWKISSQSPVODXUFKNLGZUIAZNNDFNUFAVMYECUHCAZJBYCLWWKTSGVR | null | 0.9680541190017328 | UCFAOCDFSUNIOOVESGTIPFVKUARMUBGZXYUKKFAFXYZOHHJFVMANHSBRDCSOPTTCSZJSNBGPIFIBAHZYTPM | [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.snpsift.tests.unit.TestCasesDataFrameSnp [INFO] [INFO] Results: [INFO] [INFO] Tests run: 473, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 03:14 min [INFO] Finished at: 2026-01-08T17:20:11-12:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/snpsift-5.2.e\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian/maven-repo --batch-mode -Ddebian.dir=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian -Ddebian.package=libsnpsift-java -Dmaven.repo.local=/build/reproducible-path/snpsift-5.2.e\+dfsg/debian/maven-repo -Dinstall.to.usj=true org.debian.maven:debian-maven-plugin:2.6:install OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ------------------------< org.snpsift:snpsift >------------------------- [INFO] Building SnpSift 5.2 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ snpsift --- [INFO] Cleaning pom file: /build/reproducible-path/snpsift-5.2.e+dfsg/pom.xml.save with options: [INFO] --keep-pom-version --package=libsnpsift-java [INFO] --rules=/build/reproducible-path/snpsift-5.2.e+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/snpsift-5.2.e+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/snpsift-5.2.e+dfsg/debian/maven.publishedRules [INFO] Install jar for snpsift into /usr/share/java [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 0.399 s [INFO] Finished at: 2026-01-08T17:20:13-12:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibsnpsift-java --javadoc --base-directory=/build/reproducible-path/snpsift-5.2.e\+dfsg --non-explore Failed to parse /usr/share/maven-repo/org/biojava/biojava-structure/6.x/biojava-structure-6.x.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.repo.Repository.scanOnce(Repository.java:196) at org.debian.maven.repo.POMTransformer.usePluginVersionsFromRepository(POMTransformer.java:107) at org.debian.maven.packager.DependenciesSolver.main(DependenciesSolver.java:907) Failed to parse /usr/share/maven-repo/org/biojava/biojava-structure/6.1.0/biojava-structure-6.1.0.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.repo.Repository.scanOnce(Repository.java:196) at org.debian.maven.repo.POMTransformer.usePluginVersionsFromRepository(POMTransformer.java:107) at org.debian.maven.packager.DependenciesSolver.main(DependenciesSolver.java:907) Failed to parse /usr/share/maven-repo/org/biojava/biojava-structure/6.x/biojava-structure-6.x.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.packager.DependenciesSolver.getRepository(DependenciesSolver.java:231) at org.debian.maven.packager.DependenciesSolver.solveDependencies(DependenciesSolver.java:237) at org.debian.maven.packager.DependenciesSolver.main(DependenciesSolver.java:922) Failed to parse /usr/share/maven-repo/org/biojava/biojava-structure/6.1.0/biojava-structure-6.1.0.pom javax.xml.stream.XMLStreamException: ParseError at [row,col]:[117,21] Message: Element type "debian.org.rcsb." must be followed by either attribute specifications, ">" or "/>". at java.xml/com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:652) at org.debian.maven.repo.POMReader.readPom(POMReader.java:82) at org.debian.maven.repo.POMReader.readPom(POMReader.java:57) at org.debian.maven.repo.Repository.scan(Repository.java:397) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:394) at org.debian.maven.repo.Repository.scan(Repository.java:201) at org.debian.maven.packager.DependenciesSolver.getRepository(DependenciesSolver.java:231) at org.debian.maven.packager.DependenciesSolver.solveDependencies(DependenciesSolver.java:237) at org.debian.maven.packager.DependenciesSolver.main(DependenciesSolver.java:922) Analysing pom.xml... Checking dependencies for documentation packages... > dpkg --search /usr/share/doc/antlr4/api/index.html Found antlr4-doc > dpkg --search /usr/share/doc/libcommons-math3-java/api/index.html Found libcommons-math3-java-doc > dpkg --search /usr/share/doc/libhtsjdk-java/api/index.html Found libhtsjdk-java-doc > dpkg --search /usr/share/doc/libsnpeff-java/api/index.html Found libsnpeff-java-doc > dpkg --search /usr/share/doc/libtrove3-java/api/index.html Found libtrove3-java-doc bash -c "rm -f target/apidocs/*.sh target/apidocs/options" mh_unpatchpoms -plibsnpsift-java dh_install jh_installjavadoc dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libsnpsift-java: substitution variable ${java:Depends} unused, but is defined dpkg-gencontrol: warning: package libsnpsift-java: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: package libsnpsift-java: substitution variable ${maven:DocDepends} unused, but is defined dpkg-gencontrol: warning: package libsnpsift-java-doc: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: package libsnpsift-java-doc: substitution variable ${maven:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libsnpsift-java' in '../libsnpsift-java_5.2.e+dfsg-1_all.deb'. dpkg-deb: building package 'snpsift' in '../snpsift_5.2.e+dfsg-1_all.deb'. dpkg-deb: building package 'libsnpsift-java-doc' in '../libsnpsift-java-doc_5.2.e+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../snpsift_5.2.e+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../snpsift_5.2.e+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4160292 and its subdirectories I: Current time: Thu Jan 8 17:20:46 -12 2026 I: pbuilder-time-stamp: 1767936046 Fri Dec 6 22:57:47 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Dec 6 22:57:47 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Dec 6 23:11:36 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Dec 6 23:11:37 UTC 2024 I: snpsift_5.2.e+dfsg-1_amd64.changes: Format: 1.8 Date: Mon, 07 Oct 2024 13:35:44 +0200 Source: snpsift Binary: libsnpsift-java libsnpsift-java-doc snpsift Architecture: all Version: 5.2.e+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: libsnpsift-java - tool to annotate and manipulate genome variants - lib libsnpsift-java-doc - Documentation for SnpSift snpsift - tool to annotate and manipulate genome variants - tool Changes: snpsift (5.2.e+dfsg-1) unstable; urgency=medium . * New upstream version 5.2.e+dfsg * Refreshing patches * Fixing d/watch with uversionmangle to address version numbers like 5.2.e * Updating d/rules and the autopkgtest as the test classes are now provided under src/test Checksums-Sha1: 024bce3cbc9e1e979896932efc7c21d77777e0a6 249180 libsnpsift-java-doc_5.2.e+dfsg-1_all.deb 62e209af023ac5fbc4381f9306245a46ba5b0a77 371460 libsnpsift-java_5.2.e+dfsg-1_all.deb 7c053f657cc452c327781d3933b7f070ab1eb8c4 4672 snpsift_5.2.e+dfsg-1_all.deb 5dff226d2d15f132dcae715809c06e68399cef02 15631 snpsift_5.2.e+dfsg-1_amd64.buildinfo Checksums-Sha256: 6b1ca90bebc96cb96d8f218483ac03daade2a6f3264b8fd16475393ef0677b74 249180 libsnpsift-java-doc_5.2.e+dfsg-1_all.deb df976897e3b4d7009105b259622201c41c28ad17ee49d036fa8db6a7ea616927 371460 libsnpsift-java_5.2.e+dfsg-1_all.deb b39d515a6f3ee099bff8192615f4ab772f67616962736e652fde9965a4a20719 4672 snpsift_5.2.e+dfsg-1_all.deb bd5ce901b0d34d301534b22e641d8255fad7d08a22387f455ba531d35cd9e6c9 15631 snpsift_5.2.e+dfsg-1_amd64.buildinfo Files: e8030ff6b2808238f49ae4365a8f88a6 249180 doc optional libsnpsift-java-doc_5.2.e+dfsg-1_all.deb 46a2664b933cc0da0dc882bec595dc59 371460 java optional libsnpsift-java_5.2.e+dfsg-1_all.deb 7354f6a3eb7478319e4e87f9868732ae 4672 java optional snpsift_5.2.e+dfsg-1_all.deb 936efb96ec04f3a0cfa4e63c69bcecf2 15631 java optional snpsift_5.2.e+dfsg-1_amd64.buildinfo Fri Dec 6 23:11:39 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_2-25534.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/snpsift_5.2.e+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/snpsift_5.2.e+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/snpsift_5.2.e+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/b1/snpsift_5.2.e+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YcXaOHQV/b2/snpsift_5.2.e+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.336s) 0.336s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 642ms CPU time consumed: 638ms Fri Dec 6 23:58:29 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 6 23:58:29 UTC 2024 I: snpsift from trixie built successfully and reproducibly on amd64. Fri Dec 6 23:58:32 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Dec 6 23:58:32 UTC 2024 I: Submitting 20K b1/snpsift_5.2.e+dfsg-1_amd64.buildinfo.asc Fri Dec 6 23:58:40 UTC 2024 I: Submitting 20K b2/snpsift_5.2.e+dfsg-1_amd64.buildinfo.asc Fri Dec 6 23:59:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 6 23:59:01 UTC 2024 I: Done submitting .buildinfo files. Fri Dec 6 23:59:01 UTC 2024 I: Removing signed snpsift_5.2.e+dfsg-1_amd64.buildinfo.asc files: removed './b1/snpsift_5.2.e+dfsg-1_amd64.buildinfo.asc' removed './b2/snpsift_5.2.e+dfsg-1_amd64.buildinfo.asc'