Thu Nov 14 05:31:46 UTC 2024 I: starting to build seqan-needle/trixie/amd64 on jenkins on '2024-11-14 05:31' Thu Nov 14 05:31:46 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/36366/console.log Thu Nov 14 05:31:46 UTC 2024 I: Downloading source for trixie/seqan-needle=1.0.3+ds-1 --2024-11-14 05:31:47-- http://deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.3+ds-1.dsc’ 0K .. 100% 266M=0s 2024-11-14 05:31:47 (266 MB/s) - ‘seqan-needle_1.0.3+ds-1.dsc’ saved [2319/2319] Thu Nov 14 05:31:47 UTC 2024 I: seqan-needle_1.0.3+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-needle Binary: seqan-needle, seqan-needle-doc Architecture: any all Version: 1.0.3+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/needle Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan-needle Vcs-Git: https://salsa.debian.org/med-team/seqan-needle.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, cmake, git, libcereal-dev, libgtest-dev, libseqan3-dev Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen Package-List: seqan-needle deb science optional arch=any seqan-needle-doc deb doc optional arch=all Checksums-Sha1: 3560c1218bcab7c03a614bc63ac74fe26b24a08a 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 631215f2ca4b9799372fa5cd86618408e90d8528 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Checksums-Sha256: c26e8be818b237b5d1dd5c04d2f308413d80ab7176521385e4b663e4eb44f75c 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 11002794c7a80c08d26309ab74244809253de5c0c7354f4d30fa58d8adbe2e88 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Files: 50a8401714f027bb344a49b5ead1acc4 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 8c7ded76b128b4404bedc14d39fafef5 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmcx9nsACgkQPCZ2P2xn 5uIHxxAAltOK2CfvMOAFA/XzUwd0t7R2SCOXxQpezG19Fyy9Q+5OaIrHmNGPWov2 9sGmZ159YjPsFE6rXtOdABfmnZuCkhXfyhLz78IlBLazm0O4RsuY7LX7w/yB2gmz Ygx286XNmRRd8/UbFLLDtrfJgKqnIp0h7b0o8yz0cAHVmoRTiktSEmointrXu6V7 kbUrV0FG5vM54RF0IstZS30fT6hfxuFa1fJjy1wlN93cqdCuvEih3baeXyuMmUfE /fM3Cn6t853uF7Bszp2ygn8MpGmdu16UldAGpVrh4AkGjAkFW6i4w0JU4EiritMZ vZuxP/r62rDWY1pdj717TW3FMFKT7LyVFcTvJPJwiz4ASbVjV70gkYNR2mgTBRuX JSAK5YM+3kQjk1fNva1YLiDCSbUVeOTa0cuKlKGaZzNyMMVmkH8fXscam7FWI016 cPRLwGOm5hvZPl8b4ACN0KeA3ZG7pfNWVmqz1GYNzQN5kUGSxoC+g8ihUi6EV0nV LfxCn/w12+NAi4MtbmiETQ/H5zjXnX9XWC3ZIWIH9wTP1+nTiuuhpU9Jy08Tduut rRpmppeJmoeqY+YoAxmPutxqVS9JlT7gOxJQ3Il0Evegos6r8apteItE8W4wVlWM x92gph95tGQK/J1mhkCR/Wc8vIBWd5SGVVBXEOXVL/uITEMQNXU= =b6Iq -----END PGP SIGNATURE----- Thu Nov 14 05:31:47 UTC 2024 I: Checking whether the package is not for us Thu Nov 14 05:31:47 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Nov 14 05:31:47 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Nov 14 05:36:51 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 16 23:54:47 -12 2025 I: pbuilder-time-stamp: 1765972487 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 11 12:20:11 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3624419/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='304d209cd0dc4bd38c6cd2d46af3af47' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3624419' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/pbuilderrc_w8yq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/b1 --logfile b1/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3624419/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After unpacking 494 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.3-1 [26.0 MB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.3-1 [13.2 MB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libclang1-19 amd64 1:19.1.3-1 [7616 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b3 [5011 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 git-man all 1:2.45.2-1 [2158 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 git amd64 1:2.45.2-1 [8645 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 googletest all 1.15.2-1 [514 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.15.2-1 [259 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libseqan3-dev all 3.3.0+ds-2 [758 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 112 MB in 7s (15.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... 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Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up doxygen (1.9.8+ds-2+b3) ... Setting up git (1:2.45.2-1) ... Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.3.0 -- Found Git: /usr/bin/git (found version "2.45.2") -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (7.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P 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src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 "/usr/bin/gcc-ar-14" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-14" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 9%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 25%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o [ 25%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o [ 25%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o [ 29%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o [ 32%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp [ 38%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o [ 38%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp [ 41%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp [ 48%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o [ 48%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp [ 51%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o [ 54%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp [ 58%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp [ 61%] Linking CXX executable ../../needle_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 64%] Linking CXX executable ../../count_options_test [ 67%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 70%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target needle_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target minimiser_options_test [ 74%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 77%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 80%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 83%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 87%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 90%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 93%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [ 96%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a [100%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target delete_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target count_test [100%] Built target estimate_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibf_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target minimiser_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'test/CMakeFiles/tests.dir/build'. make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target tests make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 260 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 295 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 364 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 365 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 393 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (1 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (1 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (0 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (4 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (4 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 2: [ OK ] delete_test.no_given_thresholds (2 ms) 2: [----------] 1 test from delete_test (2 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 2: [ OK ] insert_test.ibf (1 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 2: [ OK ] insert_test.ibf_no_given_thresholds (1 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (1 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (2 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (0 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (1 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 2: [ OK ] insert_test.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (1 ms) 2: [----------] 8 tests from insert_test (10 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (12 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (2 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (0 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (0 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (0 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (2 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (1 ms) 5: [ RUN ] ibfmin_test.different_shape 5: [ OK ] ibfmin_test.different_shape (0 ms) 5: [----------] 6 tests from ibfmin_test (7 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (7 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (2 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (0 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (0 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (1 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (0 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (0 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser_test (6 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (6 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (3 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (3 ms) 7: [----------] 2 tests from needle_options_test (7 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (7 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (3 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (3 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: count_test ....................... Passed 0.02 sec 2/13 Test #2: insert_delete_test ............... Passed 0.02 sec 3/13 Test #5: ibfmin_test ...................... Passed 0.02 sec 4/13 Test #6: minimiser_test ................... Passed 0.02 sec 5/13 Test #7: needle_options_test .............. Passed 0.01 sec 9: [ OK ] insert_options_test.insert_fail_no_argument (3 ms) 9: [ RUN ] insert_options_test.with_argument 11: [ OK ] estimate_options_test.no_options (4 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 12: [ OK ] count_options_test.no_options (4 ms) 12: [ RUN ] count_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (3 ms) 10: [ RUN ] minimiser_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 13: [ OK ] delete_options_test.delete_no_options (3 ms) 13: [ RUN ] delete_options_test.with_argument 11: [ OK ] estimate_options_test.fail_no_argument (3 ms) 11: [ RUN ] estimate_options_test.with_argument 12: [ OK ] count_options_test.fail_no_argument (3 ms) 12: [ RUN ] count_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 10: [ OK ] minimiser_options_test.with_arguments (5 ms) 10: [ RUN ] minimiser_options_test.cutoff 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 12: [ OK ] count_options_test.with_arguments (5 ms) 12: [ RUN ] count_options_test.multithreads 10: [ OK ] minimiser_options_test.cutoff (4 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 12: [ OK ] count_options_test.multithreads (5 ms) 12: [ RUN ] count_options_test.paired 10: [ OK ] minimiser_options_test.multiple_sample (5 ms) 10: [ RUN ] minimiser_options_test.multithreads 12: [ OK ] count_options_test.paired (6 ms) 12: [----------] 5 tests from count_options_test (25 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 10: [ OK ] minimiser_options_test.multithreads (5 ms) 10: [ RUN ] minimiser_options_test.paired 12: [ OK ] genome_options_test.no_options (3 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.paired (5 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 12: [ OK ] genome_options_test.fail_no_argument (4 ms) 12: [ RUN ] genome_options_test.with_arguments 10: [ OK ] minimiser_options_test.invalid_argument (3 ms) 10: [----------] 8 tests from minimiser_options_test (38 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (38 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: minimiser_options_test ........... Passed 0.04 sec 12: [ OK ] genome_options_test.with_arguments (4 ms) 12: [----------] 3 tests from genome_options_test (12 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (38 ms total) 12: [ PASSED ] 8 tests. 7/13 Test #12: count_options_test ............... Passed 0.04 sec 4: [ OK ] ibf_test.different_file_sizes (1588 ms) 4: [----------] 8 tests from ibf_test (1593 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (1593 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: ibf_test ......................... Passed 1.60 sec 8: [ OK ] ibf_options_test.ibf_with_argument (2285 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate_test.example (2656 ms) 3: [ RUN ] estimate_test.example_multiple_threads 11: [ OK ] estimate_options_test.with_argument (3634 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 9: [ OK ] insert_options_test.with_argument (3866 ms) 9: [----------] 3 tests from insert_options_test (3874 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (3874 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 3.88 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (9453 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 3: [ OK ] estimate_test.example_multiple_threads (16380 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 3: [ OK ] estimate_test.example_different_expressions_per_level (5618 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (13065 ms) 3: [----------] 10 tests from estimate_test (37727 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (37727 ms total) 3: [ PASSED ] 10 tests. 10/13 Test #3: estimate_test .................... Passed 37.74 sec 13: [ OK ] delete_options_test.with_argument (120095 ms) 13: [----------] 2 tests from delete_options_test (120098 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (120098 ms total) 13: [ PASSED ] 2 tests. 11/13 Test #13: delete_options_test .............. Passed 120.10 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (132739 ms) 11: [ RUN ] estimate_options_test.with_argument_out 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (125445 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (396 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (3 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (3 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (3 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (3 ms) 8: [----------] 19 tests from ibf_options_test (137640 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (137640 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: ibf_options_test ................. Passed 137.64 sec 11: [ OK ] estimate_options_test.with_argument_out (15895 ms) 11: [----------] 5 tests from estimate_options_test (152277 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (152277 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 152.28 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 152.30 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.3.0 -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (3.1s) -- Generating done (0.2s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3624419 and its subdirectories I: Current time: Tue Dec 16 23:59:49 -12 2025 I: pbuilder-time-stamp: 1765972789 Thu Nov 14 05:36:51 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Nov 14 05:36:51 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Nov 14 05:51:35 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Nov 14 05:51:36 UTC 2024 I: seqan-needle_1.0.3+ds-1_amd64.changes: Format: 1.8 Date: Mon, 11 Nov 2024 11:24:30 +0100 Source: seqan-needle Binary: seqan-needle seqan-needle-dbgsym seqan-needle-doc Architecture: amd64 all Version: 1.0.3+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: seqan-needle - pre-filter for the counting of very large collections of nucleoti seqan-needle-doc - HTML documentation for seqan-needle and its APIs Changes: seqan-needle (1.0.3+ds-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) * Refreshed patches * d/rules: ensure that the tests are built Checksums-Sha1: 3e3ac6edfba1d2e32158f3b7d4825e18af16a05a 5416460 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 8d4ae13ca69eba323e5f19f6402769c45590c407 116208 seqan-needle-doc_1.0.3+ds-1_all.deb 49027e3758053e651276e974e3c5ad13ef32fc7a 7114 seqan-needle_1.0.3+ds-1_amd64.buildinfo fec59f20f9f5ffd017749c094fb49f95d20436b7 358364 seqan-needle_1.0.3+ds-1_amd64.deb Checksums-Sha256: f92a167e4c85c39686e2f665512bfed12e281a7ba1e367964ed315dbb5dc5f99 5416460 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 5da92c4d42ea26c874714830f48c41ceefadd5b472cfa3f04c8f139b83423019 116208 seqan-needle-doc_1.0.3+ds-1_all.deb a3817565f5d388c0c0f56498c586d403f573bcd49b0b4a42da39c63e8fe057fe 7114 seqan-needle_1.0.3+ds-1_amd64.buildinfo 39279bc63253b8a4fd497d637f47bb0763fadc28e9a237ec45b6de7989faecc9 358364 seqan-needle_1.0.3+ds-1_amd64.deb Files: 0cb62b2c1575b56b859a2f0a860d7bcf 5416460 debug optional seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 410befb172eb1121510483aa29cf5bec 116208 doc optional seqan-needle-doc_1.0.3+ds-1_all.deb ed6f1cc5570c5a9023112be03d2b6850 7114 science optional seqan-needle_1.0.3+ds-1_amd64.buildinfo f3e328547f57b98f3759c7286ab5f1e1 358364 science optional seqan-needle_1.0.3+ds-1_amd64.deb Thu Nov 14 05:51:37 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_4-36366.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/seqan-needle_1.0.3+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/seqan-needle_1.0.3+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/seqan-needle_1.0.3+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/b1/seqan-needle_1.0.3+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zMlycmFd/b2/seqan-needle_1.0.3+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.444s) 0.444s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.080s) 0.080s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 773ms CPU time consumed: 774ms Thu Nov 14 05:51:38 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 14 05:51:38 UTC 2024 I: seqan-needle from trixie built successfully and reproducibly on amd64. Thu Nov 14 05:51:39 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 14 05:51:39 UTC 2024 I: Submitting 8.0K b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Thu Nov 14 05:51:40 UTC 2024 I: Submitting 8.0K b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Thu Nov 14 05:51:41 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 14 05:51:41 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 14 05:51:41 UTC 2024 I: Removing signed seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc files: removed './b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc' removed './b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc'