Mon Apr 29 21:22:38 UTC 2024 I: starting to build saint/trixie/amd64 on jenkins on '2024-04-29 21:22' Mon Apr 29 21:22:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/18598/console.log Mon Apr 29 21:22:38 UTC 2024 I: Downloading source for trixie/saint=2.5.0+dfsg-4 --2024-04-29 21:22:38-- http://deb.debian.org/debian/pool/main/s/saint/saint_2.5.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2003 (2.0K) [text/prs.lines.tag] Saving to: ‘saint_2.5.0+dfsg-4.dsc’ 0K . 100% 298M=0s 2024-04-29 21:22:38 (298 MB/s) - ‘saint_2.5.0+dfsg-4.dsc’ saved [2003/2003] Mon Apr 29 21:22:39 UTC 2024 I: saint_2.5.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: saint Binary: saint Architecture: any Version: 2.5.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Thorsten Alteholz Homepage: http://saint-apms.sourceforge.net/Main.html Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/saint Vcs-Git: https://salsa.debian.org/med-team/saint.git Build-Depends: debhelper-compat (= 13), libgsl-dev Package-List: saint deb science optional arch=any Checksums-Sha1: 58f3866d8b68686e42b22e13d3d97e703bff1447 117060 saint_2.5.0+dfsg.orig.tar.xz 00a7e522ea3477e7af093a622f6b205a8e010df7 5620 saint_2.5.0+dfsg-4.debian.tar.xz Checksums-Sha256: 26dfd1dc9a9015ccb01d16ea56c96f9396f3a81d04d9b8b8f3b431595aa548d6 117060 saint_2.5.0+dfsg.orig.tar.xz 50fc9624ce6244a6cd8bf472dd3f341883ee84b7f125fa6ba5cb5f80e0befb24 5620 saint_2.5.0+dfsg-4.debian.tar.xz Files: a521375f525f597f57b6613b70df0a72 117060 saint_2.5.0+dfsg.orig.tar.xz f7ab50cdc0658da2a95b8fc6a0234a7b 5620 saint_2.5.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl8hQfcUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHfWBAArWDIrBQ4sFajPhqT7PBsBe/jGJNO u7F1IrgsY/wECAlosZoVLaSNmB2Sb3H0R+n9bnfLSEAbyJ6FSeMvTsnjtK9XHq+5 yXMhPIT9LLi0j8flovtelG9YfLWv4adUq8obWhGWtFPzxyNdXbbXH1tDy96Gzse0 OoT7H4JJ4LxmPIR8WuzdFJjUte+RwN2eMryy6VE6Mz/updSvKR4HjRDyqZuh3LlD 9Ib8KZ7hfL1gaIqYslpI3jM6uS9T73WZ1W/MJOlaPpzOUHgXHVfPeCWCQ+gvQoye sossXo4zaIbsEIuHaDXxuNQdT1JlNr1jF1z30Anjtz7a4zZzib+KrYwSLR38gjKt MDWxRNBGOrNUwedxEPnrtk5d5Z7nv1lxRWY7UUGKioIEZBIgkeMNsyDwsewVwpcH mYiE66UqKvWgOjmIue23qaWn/2E3InhD1ulGdrO2H2sIksRrlAhbM+GcHu8Fg3OD J2jsrPIAxvt0+c80qhJjV7APIZbT/oJ30Yoa3S9CFMC70xbpY43eztN82i337Hlk fuK5mEVvRtWl/hxCJ7dmZPO43oVKnNfOTLiHpW9KSmcOMfGD08xBs0FSVOJJG25n K8vLQEy+xLkrUPNdWHAmREKDph88gHcSJ4WPwHbxJqosxiprf/AuHN8s0ehuI4nh BrQs7w8UO14++yk= =8yAw -----END PGP SIGNATURE----- Mon Apr 29 21:22:39 UTC 2024 I: Checking whether the package is not for us Mon Apr 29 21:22:39 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Apr 29 21:22:39 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Apr 29 21:25:49 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 1 15:45:45 -12 2025 I: pbuilder-time-stamp: 1748835945 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [saint_2.5.0+dfsg-4.dsc] I: copying [./saint_2.5.0+dfsg.orig.tar.xz] I: copying [./saint_2.5.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 29 09:31:35 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./saint_2.5.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting saint in saint-2.5.0+dfsg dpkg-source: info: unpacking saint_2.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking saint_2.5.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-makefile.patch dpkg-source: info: applying ld-as-needed.patch dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1737881/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c9ce51cd164c4435909c3da1eea63743' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1737881' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/pbuilderrc_cr2Y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/b1 --logfile b1/build.log saint_2.5.0+dfsg-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1737881/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 21.2 MB of archives. After unpacking 84.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libgsl-dev amd64 2.7.1+dfsg-6+b1 [1146 kB] Fetched 21.2 MB in 0s (49.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_amd64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_amd64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../30-libgslcblas0_2.7.1+dfsg-6+b1_amd64.deb ... Unpacking libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Selecting previously unselected package libgsl27:amd64. Preparing to unpack .../31-libgsl27_2.7.1+dfsg-6+b1_amd64.deb ... Unpacking libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../32-libgsl-dev_2.7.1+dfsg-6+b1_amd64.deb ... Unpacking libgsl-dev (2.7.1+dfsg-6+b1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgsl-dev (2.7.1+dfsg-6+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/saint-2.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../saint_2.5.0+dfsg-4_source.changes dpkg-buildpackage: info: source package saint dpkg-buildpackage: info: source version 2.5.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/saint-2.5.0+dfsg' dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/saint-2.5.0+dfsg' rm -rf /build/reproducible-path/saint-2.5.0+dfsg/build rm -f /build/reproducible-path/saint-2.5.0+dfsg/src/*/*.gch make[2]: Leaving directory '/build/reproducible-path/saint-2.5.0+dfsg' rm -rf bin make[1]: Leaving directory '/build/reproducible-path/saint-2.5.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/saint-2.5.0+dfsg' # Tweak hardening flags into the Makefile dh_auto_build --no-parallel -- all CFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now' make -j1 "INSTALL=install --strip-program=true" all "CFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/saint-2.5.0+dfsg' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/*.h /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c: In function 'read_all_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:67:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 67 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:71:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 71 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:73:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:76:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:139:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:147:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 147 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:151:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 151 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:246:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 246 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:248:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 248 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:250:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 250 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.h:31, from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:1: /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:183:32: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 183 | assert(prey_appear = (int *) calloc(nuprey, sizeof(int))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.h:25: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:194:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 194 | assert(t_preyname = (char **) calloc(nuprey, sizeof(char *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/initdata.c:196:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 196 | assert(t_preylen = (int *) calloc(nuprey, sizeof(int))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:225:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 225 | chdir("reformat_log"); | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:231:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:244:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 244 | chdir("reformat_log"); | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:251:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 251 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c: In function 'mapIPBaitToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:385:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 385 | chdir("reformat_log"); | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:391:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 391 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:404:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 404 | chdir("reformat_log"); | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:410:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 410 | chdir(".."); | ^~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.h:31, from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:1: /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c: In function 'find_unique_interaction': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:48:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 48 | assert(data->ubait = (char **) calloc(data->nuinter, sizeof(char *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.h:25: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/mapping.c:50:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 50 | assert(data->prob = (double *) calloc(data->nuinter, sizeof(double))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/printmap.c: In function 'printMap': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/printmap.c:99:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("FILTER"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/printmap.c:105:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c: In function 'reread_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:26:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 26 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:32:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 32 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:35:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:62:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:64:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:66:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:97:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:99:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:101:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/remap.c:103:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c: In function 'ncol': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c:25:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 25 | fgets(buf, sizeof(buf), fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c: In function 'read_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c:103:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | system("rm -rf interaction.intermediate"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c: In function 'main': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTreformat/saint.c:129:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 129 | system("mkdir reformat_log"); /* mapping logs */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build gcc -Wl,-z,relro -Wl,-z,now /build/reproducible-path/saint-2.5.0+dfsg/build/*.o -o /build/reproducible-path/saint-2.5.0+dfsg/bin/saint-reformat -lm -lgsl -lgslcblas rm /build/reproducible-path/saint-2.5.0+dfsg/build/*.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/*.h /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c: In function 'read_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:95:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 95 | for(j=0;j<4;j++) fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:97:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:101:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | for(j=0;j<4;j++) fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:103:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:107:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 107 | for(j=0;j<4;j++) fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:109:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 109 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:119:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:121:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 121 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:123:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 123 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:125:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/init_data.c:128:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(fp,"%s",buf); | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/saint.c: In function 'ncol': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl-matrix/saint.c:25:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 25 | fgets(buf, sizeof(buf), fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build gcc -Wl,-z,relro -Wl,-z,now /build/reproducible-path/saint-2.5.0+dfsg/build/*.o -o /build/reproducible-path/saint-2.5.0+dfsg/bin/saint-spc-noctrl-matrix -lm -lgsl -lgslcblas rm /build/reproducible-path/saint-2.5.0+dfsg/build/*.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/*.h /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'read_interaction_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:27:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 27 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:29:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:31:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 31 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:33:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:247:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:253:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:266:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 266 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:272:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 272 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'read_prey_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:301:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 301 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:303:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 303 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:307:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 307 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'mapIPBaitToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:447:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 447 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:453:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 453 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:466:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 466 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:472:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 472 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'read_bait_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:537:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:539:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 539 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:541:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 541 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.h:29, from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:1: /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/initdata.c:215:31: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 215 | assert(data->p2i = (int **) calloc(data->nprey, sizeof(int *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.h:22: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/printmap.c: In function 'printMap': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/printmap.c:99:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("MAPPING"); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/printmap.c:105:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/result.c: In function 'write_result': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/result.c:155:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | chdir("RESULT"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/result.c:164:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 164 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c: In function 'ncol': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:25:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 25 | fgets(buf, sizeof(buf), fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c: In function 'main': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:177:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 177 | system("mkdir LOG"); /* error logs */ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:178:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 178 | system("mkdir MAPPING"); /* mapping logs */ | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:179:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 179 | system("mkdir MCMC"); /* posterior samples */ | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:180:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 180 | system("mkdir RESULT"); /* posterior probabilities, other summaries */ | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:196:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 196 | chdir("MCMC"); | ^~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-noctrl/saint.c:244:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 244 | chdir(".."); | ^~~~~~~~~~~ mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build gcc -Wl,-z,relro -Wl,-z,now /build/reproducible-path/saint-2.5.0+dfsg/build/*.o -o /build/reproducible-path/saint-2.5.0+dfsg/bin/saint-spc-noctrl -lm -lgsl -lgslcblas rm /build/reproducible-path/saint-2.5.0+dfsg/build/*.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/*.h /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'read_interaction_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:28:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:30:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:32:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 32 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:34:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 34 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:246:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 246 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:252:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:265:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 265 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:271:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 271 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'read_prey_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:297:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 297 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:299:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 299 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:303:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 303 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'mapIPBaitToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:445:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 445 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:451:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 451 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:464:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 464 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:470:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 470 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'read_bait_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:535:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 535 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:537:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:539:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 539 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.h:29, from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:1: /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'find_unique_interaction': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:94:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 94 | assert(data->ubait = (char **) calloc(data->nuinter, sizeof(char *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.h:22: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:96:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 96 | assert(data->prob = (float *) calloc(data->nuinter, sizeof(float))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/initdata.c:214:31: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 214 | assert(data->p2i = (int **) calloc(data->nprey, sizeof(int *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/printmap.c: In function 'printMap': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/printmap.c:99:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("MAPPING"); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/printmap.c:105:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/result.c: In function 'write_result': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/result.c:168:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 168 | chdir("RESULT"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/result.c:177:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 177 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c: In function 'ncol': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:25:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 25 | fgets(buf, sizeof(buf), fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c: In function 'main': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:151:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 151 | system("mkdir LOG"); /* error logs */ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:152:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 152 | system("mkdir MAPPING"); /* mapping logs */ | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:153:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system("mkdir MCMC"); /* posterior samples */ | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:154:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | system("mkdir RESULT"); /* posterior probabilities, other summaries */ | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:166:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 166 | chdir("MCMC"); | ^~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTspc-ctrl/saint.c:214:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 214 | chdir(".."); | ^~~~~~~~~~~ mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build gcc -Wl,-z,relro -Wl,-z,now /build/reproducible-path/saint-2.5.0+dfsg/build/*.o -o /build/reproducible-path/saint-2.5.0+dfsg/bin/saint-spc-ctrl -lm -lgsl -lgslcblas rm /build/reproducible-path/saint-2.5.0+dfsg/build/*.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/saint-2.5.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/*.c /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/*.h /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'read_interaction_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:28:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:30:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:32:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 32 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:34:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 34 | fscanf(fpinter, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:275:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 275 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:281:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 281 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:294:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 294 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:300:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 300 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'read_prey_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:328:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 328 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:331:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fscanf(fpprey, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'mapIPBaitToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:472:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 472 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:478:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 478 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:491:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 491 | chdir("LOG"); | ^~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:497:5: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'read_bait_data': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:562:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 562 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:564:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 564 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:566:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 566 | fscanf(fpbait, "%s", buf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.h:29, from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:1: /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'find_unique_interaction': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:123:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 123 | assert(data->ubait = (char **) calloc(data->nuinter, sizeof(char *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.h:22: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:125:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 125 | assert(data->prob = (float *) calloc(data->nuinter, sizeof(float))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c: In function 'mapPreyToData': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/initdata.c:243:31: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 243 | assert(data->p2i = (int **) calloc(data->nprey, sizeof(int *))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c: In function 'printMap': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c:99:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("MAPPING"); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/printmap.c:105:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c: In function 'write_result': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c:183:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | chdir("RESULT"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/result.c:192:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 192 | chdir(".."); | ^~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c: In function 'ncol': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:25:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 25 | fgets(buf, sizeof(buf), fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c: In function 'main': /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:142:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 142 | system("mkdir LOG"); /* error logs */ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:143:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 143 | system("mkdir MAPPING"); /* mapping logs */ | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:144:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 144 | system("mkdir MCMC"); /* posterior samples */ | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:145:3: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 145 | system("mkdir RESULT"); /* posterior probabilities, other summaries */ | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:160:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 160 | chdir("MCMC"); | ^~~~~~~~~~~~~ /build/reproducible-path/saint-2.5.0+dfsg/src/SAINTint-ctrl/saint.c:209:3: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | chdir(".."); | ^~~~~~~~~~~ mv *.o /build/reproducible-path/saint-2.5.0+dfsg/build gcc -Wl,-z,relro -Wl,-z,now /build/reproducible-path/saint-2.5.0+dfsg/build/*.o -o /build/reproducible-path/saint-2.5.0+dfsg/bin/saint-int-ctrl -lm -lgsl -lgslcblas rm /build/reproducible-path/saint-2.5.0+dfsg/build/*.o rm -rf /build/reproducible-path/saint-2.5.0+dfsg/build rm -f /build/reproducible-path/saint-2.5.0+dfsg/src/*/*.gch -e ### All executables are in /build/reproducible-path/saint-2.5.0+dfsg/bin ### make[2]: Leaving directory '/build/reproducible-path/saint-2.5.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/saint-2.5.0+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/saint/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'saint-dbgsym' in '../saint-dbgsym_2.5.0+dfsg-4_amd64.deb'. dpkg-deb: building package 'saint' in '../saint_2.5.0+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../saint_2.5.0+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../saint_2.5.0+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1737881 and its subdirectories I: Current time: Sun Jun 1 15:48:47 -12 2025 I: pbuilder-time-stamp: 1748836127 Mon Apr 29 21:25:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Apr 29 21:25:49 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Apr 29 21:27:34 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Apr 29 21:27:35 UTC 2024 I: saint_2.5.0+dfsg-4_amd64.changes: Format: 1.8 Date: Tue, 28 Jul 2020 20:55:59 +0530 Source: saint Binary: saint saint-dbgsym Architecture: amd64 Version: 2.5.0+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: saint - Significance Analysis of INTeractome Closes: 957772 Changes: saint (2.5.0+dfsg-4) unstable; urgency=medium . * Team Upload. [ Steffen Moeller ] * d/u/metadata: yamllint * Update metadata with ref to conda . [ Nilesh Patra ] * Fix gcc-10 FTBFS (Closes: #957772) * Drop compate, debhelper-compat 13 * standards version: 4.5.0 * Add "Rules-Requires-Root:no" * Use secure URI Checksums-Sha1: aa4d5545bdfe49de613d3d5c00c7c34df91cad9b 296080 saint-dbgsym_2.5.0+dfsg-4_amd64.deb 072f46f8d3213d003271919c2b0483ecd0be8d75 5264 saint_2.5.0+dfsg-4_amd64.buildinfo 47d6f7da3a643b6d18de8cc5eb2f653a80342607 94716 saint_2.5.0+dfsg-4_amd64.deb Checksums-Sha256: 1baadcf03ef35814f58405c62d2f1d1aef218d02bf64572285d9a856c1f8a78e 296080 saint-dbgsym_2.5.0+dfsg-4_amd64.deb ef501ae401f73e30de5b166e640cafb65d32ef71cb075178ff3bf6bcef83ec36 5264 saint_2.5.0+dfsg-4_amd64.buildinfo d070dedfb82f7eb144cb1cc6e175429e71396cac3fcea540565123dcdfdd3169 94716 saint_2.5.0+dfsg-4_amd64.deb Files: 68066bee4d6a5d5a95916338578c293d 296080 debug optional saint-dbgsym_2.5.0+dfsg-4_amd64.deb d15b0aa9d92c8749aecb15aca50d424a 5264 science optional saint_2.5.0+dfsg-4_amd64.buildinfo 002f771b3688b6663d1ad34362ce7cc0 94716 science optional saint_2.5.0+dfsg-4_amd64.deb Mon Apr 29 21:27:36 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_24-18598.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/saint_2.5.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/saint_2.5.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/saint_2.5.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/b1/saint_2.5.0+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3OaXmSxS/b2/saint_2.5.0+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.332s) 0.332s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 632ms CPU time consumed: 627ms Mon Apr 29 21:27:37 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 29 21:27:37 UTC 2024 I: saint from trixie built successfully and reproducibly on amd64. Mon Apr 29 21:27:38 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 29 21:27:39 UTC 2024 I: Submitting 8.0K b1/saint_2.5.0+dfsg-4_amd64.buildinfo.asc Mon Apr 29 21:27:40 UTC 2024 I: Submitting 8.0K b2/saint_2.5.0+dfsg-4_amd64.buildinfo.asc Mon Apr 29 21:27:41 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 29 21:27:41 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 29 21:27:41 UTC 2024 I: Removing signed saint_2.5.0+dfsg-4_amd64.buildinfo.asc files: removed './b1/saint_2.5.0+dfsg-4_amd64.buildinfo.asc' removed './b2/saint_2.5.0+dfsg-4_amd64.buildinfo.asc'