Wed Nov 6 21:33:39 UTC 2024 I: starting to build r-bioc-biocparallel/trixie/amd64 on jenkins on '2024-11-06 21:33' Wed Nov 6 21:33:39 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/23358/console.log Wed Nov 6 21:33:39 UTC 2024 I: Downloading source for trixie/r-bioc-biocparallel=1.38.0-2 --2024-11-06 21:33:39-- http://deb.debian.org/debian/pool/main/r/r-bioc-biocparallel/r-bioc-biocparallel_1.38.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2197 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-biocparallel_1.38.0-2.dsc’ 0K .. 100% 221M=0s 2024-11-06 21:33:39 (221 MB/s) - ‘r-bioc-biocparallel_1.38.0-2.dsc’ saved [2197/2197] Wed Nov 6 21:33:39 UTC 2024 I: r-bioc-biocparallel_1.38.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-biocparallel Binary: r-bioc-biocparallel Architecture: any Version: 1.38.0-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/BiocParallel/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-futile.logger, r-cran-snow, r-cran-codetools, r-cran-bh, r-cran-cpp11, architecture-is-64-bit Package-List: r-bioc-biocparallel deb gnu-r optional arch=any Checksums-Sha1: a92359391e23ea9702a7b88e42adb3fdfe5d3ccd 995485 r-bioc-biocparallel_1.38.0.orig.tar.gz 3a872166d3d73cb25028e439bdaa470ee22cd613 5696 r-bioc-biocparallel_1.38.0-2.debian.tar.xz Checksums-Sha256: 7e96e07beb4e59ab08d8064aaf6b4e414c9ccd7657e9949d7d9b2325b2113cd6 995485 r-bioc-biocparallel_1.38.0.orig.tar.gz e12880de6811dedc2c1e4ee1a9f12815f2c00135650a2bab2f558e0b71e31b27 5696 r-bioc-biocparallel_1.38.0-2.debian.tar.xz Files: 1871c9e248d8da68b52166de0026fd2c 995485 r-bioc-biocparallel_1.38.0.orig.tar.gz ed63251eb2c5e2c8b5bcbde1a3ea5a46 5696 r-bioc-biocparallel_1.38.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAma/NqEACgkQPCZ2P2xn 5uL+2xAAixvyHZaQRB1pgaHLkoq2roL3jVE6V7jq+w5ia9YPyswuvqiLp/aUrj4Y IvRxmd0iO/x12eYh8kH8FPOP/sBylsnt/qaCp//mXq4WIj88nuxrwI4haVaBql0+ YC47I7GYludy4hhzrJBb0FR4HC7RHjTVLftI47dCWgxcUx3Pf0HS1ySZtAYRJ3rw GuJ32PyNYy1dIIRRAlfbjcaNRqybQ/mKJ6WJryFBZGRysPViDW4sbDYXHiA+iueT AqZZwuOTpKGiG6WDWWvQ/uYd4j4n3CW0iHYVL/XRguwGNeSKJZ5ttf22dXey4wYM YilvSMj2ord7eiOgsvSlXwsI1fRSd3jQW2mGBBU+2C6kVaJPkhUDJyOU7ecPiOby gM1cIR4Z56SeaENumCS4w/wO8oDHUlGQ4ylMUkGTneEGlZHDptEzaHe7Cxn4Dl5w ED95xZaU7WJ88dEkfRhSyQxZS8w9L13ngj3cha8fvhr8mftJhB53IcETL0FyOpsq 59DbSHk0lUuL4LFxGvvb9PHCgLHJqu4+RfP+RXS0p93HTAznlH4vJASaMuii9wa0 o5vZUdhow+cXX1R/PmriP6gu3Lgtzyig0WThYaLwlc4mGB9ZOM+HIxgneWVl65QF lur7/niouQKcVrYqKsPL4sBjndu/8Fb6TjwFgC7Zfcblr4sxC/A= =+D8B -----END PGP SIGNATURE----- Wed Nov 6 21:33:39 UTC 2024 I: Checking whether the package is not for us Wed Nov 6 21:33:39 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed Nov 6 21:33:39 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed Nov 6 21:35:13 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 9 15:56:41 -12 2025 I: pbuilder-time-stamp: 1765339001 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-biocparallel_1.38.0-2.dsc] I: copying [./r-bioc-biocparallel_1.38.0.orig.tar.gz] I: copying [./r-bioc-biocparallel_1.38.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 11:23:13 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocparallel_1.38.0-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-biocparallel in r-bioc-biocparallel-1.38.0 dpkg-source: info: unpacking r-bioc-biocparallel_1.38.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-biocparallel_1.38.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-unittests-compare-bpaggregate-and-aggregate-on-the-i.patch dpkg-source: info: applying deactivated_tests.patch dpkg-source: info: applying supplied_seed_is_not_a_valid_integer.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3322720/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e1747f17c40a447a9d509506574efde4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3322720' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/pbuilderrc_Cwrh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/b1 --logfile b1/build.log r-bioc-biocparallel_1.38.0-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3322720/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-futile.logger, r-cran-snow, r-cran-codetools, r-cran-bh, r-cran-cpp11, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-futile.logger; however: Package r-cran-futile.logger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-snow; however: Package r-cran-snow is not installed. pbuilder-satisfydepends-dummy depends on r-cran-codetools; however: Package r-cran-codetools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cpp11; however: Package r-cran-cpp11 is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-bh{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-lambda.r{a} r-cran-snow{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-glue r-cran-knitr r-cran-lobstr r-cran-mockery r-cran-progress r-cran-rcpp r-cran-rmarkdown r-cran-rstudioapi r-cran-scales r-cran-shiny r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-cran-vctrs r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 196 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 484 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 29 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b2 [804 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 66 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b2 [178 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.1-3 [28.3 MB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-6 [879 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-6 [11.7 MB] Get: 110 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-6 [11.9 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 113 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-3+b1 [161 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-3+b1 [4990 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.42-4+b2 [249 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.42-4+b2 [237 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.42-4+b2 [55.8 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.42-4+b2 [763 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.1-3 [4512 B] Get: 138 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 163 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 167 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 dh-r all 20231212 [42.2 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 189 http://deb.debian.org/debian trixie/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get: 190 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Fetched 115 MB in 2s (65.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../091-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../092-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../099-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../100-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../101-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../102-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:amd64 (10.42-4+b2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libx11-6:amd64 (2:1.8.7-1+b2) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:amd64 (1.22-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libblas-dev:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-6) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:amd64 (10.42-4+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-6) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up liblapack-dev:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-6) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:amd64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:amd64 (8.10.1-2) ... Setting up libwww-curl-perl:amd64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:amd64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-formatr (1.14-2) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-base-dev (4.4.1-3) ... Setting up libmoose-perl:amd64 (2.2207-1+b2) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-biocparallel-1.38.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-biocparallel_1.38.0-2_source.changes dpkg-buildpackage: info: source package r-bioc-biocparallel dpkg-buildpackage: info: source version 1.38.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0' dh_auto_clean rm -f config.log config.status make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-biocparallel/ -O--buildsystem=R I: R Package: BiocParallel Version: 1.38.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 13:22:38 +0200 mkdir -p /build/reproducible-path/r-bioc-biocparallel-1.38.0/debian/r-bioc-biocparallel/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-biocparallel-1.38.0/debian/r-bioc-biocparallel/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 13:22:38 +0200'" * installing *source* package 'BiocParallel' ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking for library containing shm_open... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/mman.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: 'g++ (Debian 14.2.0-6) 14.2.0' using C++11 make[1]: Entering directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ipcmutex.cpp -o ipcmutex.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o BiocParallel.so cpp11.o ipcmutex.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0/src' installing to /build/reproducible-path/r-bioc-biocparallel-1.38.0/debian/r-bioc-biocparallel/usr/lib/R/site-library/00LOCK-r-bioc-biocparallel-1.38.0/00new/BiocParallel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocParallel) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-cran-foreach for Suggests:foreach I: Using r-cran-bbmisc for Suggests:BBmisc I: Using r-cran-doparallel for Suggests:doParallel I: Using r-bioc-genomicranges for Suggests:GenomicRanges W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-rsamtools for Suggests:Rsamtools I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-shortread for Suggests:ShortRead I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-batchtools for Suggests:batchtools I: Using r-cran-data.table for Suggests:data.table I: Using r-cran-futile.logger for Imports:futile.logger I: Using r-cran-snow for Imports:snow I: Using r-cran-codetools for Imports:codetools I: Using r-cran-bh for LinkingTo:BH I: Using r-cran-cpp11 for LinkingTo:cpp11 I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-biocparallel as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0' dh_fixperms find debian -name RMPInode.R -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocparallel-1.38.0' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-biocparallel-dbgsym' in '../r-bioc-biocparallel-dbgsym_1.38.0-2_amd64.deb'. dpkg-deb: building package 'r-bioc-biocparallel' in '../r-bioc-biocparallel_1.38.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-biocparallel_1.38.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-biocparallel_1.38.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3322720 and its subdirectories I: Current time: Tue Dec 9 15:58:13 -12 2025 I: pbuilder-time-stamp: 1765339093 Wed Nov 6 21:35:15 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed Nov 6 21:35:15 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed Nov 6 21:44:06 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed Nov 6 21:44:06 UTC 2024 I: r-bioc-biocparallel_1.38.0-2_amd64.changes: Format: 1.8 Date: Fri, 16 Aug 2024 13:22:38 +0200 Source: r-bioc-biocparallel Binary: r-bioc-biocparallel r-bioc-biocparallel-dbgsym Architecture: amd64 Version: 1.38.0-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-biocparallel - BioConductor facilities for parallel evaluation Changes: r-bioc-biocparallel (1.38.0-2) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: 6581e5ee2a5a9900838ebdd83f748d76bf1fdf68 519412 r-bioc-biocparallel-dbgsym_1.38.0-2_amd64.deb de26415c5708d1f613e8dce84f3dd94dfb626d0c 10589 r-bioc-biocparallel_1.38.0-2_amd64.buildinfo 6fe1e0957c33aacd23c0f22869d3daa103d7a1e2 1330752 r-bioc-biocparallel_1.38.0-2_amd64.deb Checksums-Sha256: b5501c15e7083253cfe0e62773532bdfcbbf9d1dd165912994aa7686b22366f0 519412 r-bioc-biocparallel-dbgsym_1.38.0-2_amd64.deb 438f914147fdf261822b8c54d32d42a3ec14024354e91bcfb8ebdd60f50deaf4 10589 r-bioc-biocparallel_1.38.0-2_amd64.buildinfo 21cb23370c99529ea70967ab500176c02a4bf6988056c9118d49ced9b99a011c 1330752 r-bioc-biocparallel_1.38.0-2_amd64.deb Files: 2a60e8a5b240710ff47b0872d6da94b8 519412 debug optional r-bioc-biocparallel-dbgsym_1.38.0-2_amd64.deb 2927b081df7f4e2a7c16ef87190573fe 10589 gnu-r optional r-bioc-biocparallel_1.38.0-2_amd64.buildinfo 57212e29ca91ba17d768960b5d97a41c 1330752 gnu-r optional r-bioc-biocparallel_1.38.0-2_amd64.deb Wed Nov 6 21:44:41 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_2-23358.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/r-bioc-biocparallel_1.38.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/r-bioc-biocparallel_1.38.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/r-bioc-biocparallel_1.38.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/b1/r-bioc-biocparallel_1.38.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.rrCTdsNo/b2/r-bioc-biocparallel_1.38.0-2_amd64.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## command (total time: 3.186s) 1.333s 10 calls xxd 1.257s 8 calls diff 0.410s 22 calls Rscript 0.170s 6 calls xz 0.007s 2 calls gzip 0.004s 1 call cmp 0.004s 1 call cmp (external) 0.001s 9 calls cmp (internal) ## compare_files (cumulative) (total time: 28.140s) 5.587s 1 call abc.DotChangesFile 5.553s 1 call abc.DebFile 5.517s 2 calls abc.XzFile 5.306s 1 call abc.DebDataTarFile 4.048s 1 call abc.RdbFile 1.052s 1 call abc.GzipFile 1.034s 1 call abc.RdsFile 0.035s 1 call abc.TarFile 0.008s 1 call abc.Md5sumsFile ## container_extract (total time: 0.230s) 0.170s 6 calls diffoscope.comparators.xz.XzContainer 0.042s 136 calls diffoscope.comparators.deb.DebTarContainer 0.008s 8 calls diffoscope.comparators.deb.DebContainer 0.007s 2 calls diffoscope.comparators.gzip.GzipContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.976s) 0.976s 164 calls linediff ## has_same_content_as (total time: 0.007s) 0.005s 2 calls abc.DebFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DebDataTarFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.RdsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.GzipFile 0.000s 1 call abc.RdbFile ## main (total time: 7.390s) 7.389s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 1.324s) 1.309s 1 call html 0.008s 1 call text 0.007s 1 call json ## recognizes (total time: 0.165s) 0.078s 694 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.044s 12 calls diffoscope.comparators.binary.FilesystemFile 0.028s 372 calls diffoscope.comparators.utils.archive.ArchiveMember 0.014s 108 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.108s) 0.108s 14 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 23.314s CPU time consumed: 12.713s Wed Nov 6 21:45:09 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Nov 6 21:45:09 UTC 2024 E: r-bioc-biocparallel failed to build reproducibly in trixie on amd64. Wed Nov 6 21:45:12 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Nov 6 21:45:12 UTC 2024 I: Submitting 12K b1/r-bioc-biocparallel_1.38.0-2_amd64.buildinfo.asc Wed Nov 6 21:45:13 UTC 2024 I: Submitting 12K b2/r-bioc-biocparallel_1.38.0-2_amd64.buildinfo.asc Wed Nov 6 21:45:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 6 21:45:14 UTC 2024 I: Done submitting .buildinfo files. Wed Nov 6 21:45:14 UTC 2024 I: Removing signed r-bioc-biocparallel_1.38.0-2_amd64.buildinfo.asc files: removed './b1/r-bioc-biocparallel_1.38.0-2_amd64.buildinfo.asc' removed './b2/r-bioc-biocparallel_1.38.0-2_amd64.buildinfo.asc'