Mon Apr 22 14:09:27 UTC 2024 I: starting to build r-bioc-bioccheck/trixie/amd64 on jenkins on '2024-04-22 14:09' Mon Apr 22 14:09:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/4289/console.log Mon Apr 22 14:09:27 UTC 2024 I: Downloading source for trixie/r-bioc-bioccheck=1.38.2+dfsg-1 --2024-04-22 14:09:27-- http://deb.debian.org/debian/pool/main/r/r-bioc-bioccheck/r-bioc-bioccheck_1.38.2%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2307 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-bioccheck_1.38.2+dfsg-1.dsc’ 0K .. 100% 358M=0s 2024-04-22 14:09:27 (358 MB/s) - ‘r-bioc-bioccheck_1.38.2+dfsg-1.dsc’ saved [2307/2307] Mon Apr 22 14:09:27 UTC 2024 I: r-bioc-bioccheck_1.38.2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-bioccheck Binary: r-bioc-bioccheck Architecture: all Version: 1.38.2+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Dylan Aïssi Homepage: https://bioconductor.org/packages/BiocCheck/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocbaseutils, r-bioc-biocfilecache, r-cran-biocmanager, r-bioc-biocviews, r-cran-callr, r-cran-codetools, r-bioc-graph, r-cran-httr2, r-cran-knitr, r-cran-rvest, r-cran-stringdist Package-List: r-bioc-bioccheck deb gnu-r optional arch=all Checksums-Sha1: 2a6e1f8097f6d6ccef63ab1d7e734855a3a35d05 3989528 r-bioc-bioccheck_1.38.2+dfsg.orig.tar.xz aa3deadfb997cfb72b278c905136225b325ba220 5928 r-bioc-bioccheck_1.38.2+dfsg-1.debian.tar.xz Checksums-Sha256: 0ed45d0057d7f6e6d17fae31edd1c47fb8653a95419bc942b9ef8574d6e76230 3989528 r-bioc-bioccheck_1.38.2+dfsg.orig.tar.xz 3216a5d672a4c8bfc033480fed891c4d6021c791790e904105ce6a06773b9795 5928 r-bioc-bioccheck_1.38.2+dfsg-1.debian.tar.xz Files: e0ffa93b7e36912af134dfee4e76eb94 3989528 r-bioc-bioccheck_1.38.2+dfsg.orig.tar.xz 311b3eb0652f968cea0b98fc616d87d1 5928 r-bioc-bioccheck_1.38.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmW4Aq8OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtG8dQ/+NqRIbMAfXyG3aitAYW+ATZGPcH8RxnrF/MO6 7AhYsx2z4PMt880smFDFDHAfveCz4tB28oEtF+JW0kZfdbEaHp96OeCBJwBfZz6H NGJNztKNBSz1kwlJ3PuhaqgjLdSnJbTWM863Zgy/RkmDFUaL9ABLKJeMwEis+8wI 7EprRjptAYEDsQtobMBDBAIL4FbczfOnwo9t5xfRcp8V4Q8qNeuiyhFIbO5fZAng 7ygMz91RkZzPq6YFjPK7tMYdox2oNmU4B9A/mJJ3pnLx6op5LVlRjY0whoHTvR3u Z8jS6WRmmZv6XjkKKCDedL6exBcOoqNXqBycibj0JgyfLIN8AM6fsS7oxBBckX6i r8HDLADRNyHwfl3l/FDPRP+ECsnZ53EG6sLFlrSL0MvLqXqlK8oDdgbd7qRFozuy I65goAbwYuiy0XdwUyZJ3rw+v716CVLnR5M2Kn7yUc8tWGyZYqkHZUVdqXAiJ08R JpwNNMBM0TU4e4IzyqIzcBILz5xPHcHukAPnFRvPNZLXNjl6f101EVzpyxJeK0BG +WEpHznf5OUTQ7IweOrnpZ/CNPZEVmuKtNilrukM1oEN4Y03KRRFD2qnM69h9Jyk 4EU4v6sBVS2T8hFpUip/xQQbzq+TOSsxbiGrezqDvDpfnPYHBeovnabA2XNaPNWw qsMVVKY= =SLhM -----END PGP SIGNATURE----- Mon Apr 22 14:09:27 UTC 2024 I: Checking whether the package is not for us Mon Apr 22 14:09:27 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Apr 22 14:09:27 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Apr 22 14:12:05 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 25 08:32:31 -12 2025 I: pbuilder-time-stamp: 1748205151 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-bioccheck_1.38.2+dfsg-1.dsc] I: copying [./r-bioc-bioccheck_1.38.2+dfsg.orig.tar.xz] I: copying [./r-bioc-bioccheck_1.38.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 29 19:55:27 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-bioccheck_1.38.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-bioccheck in r-bioc-bioccheck-1.38.2+dfsg dpkg-source: info: unpacking r-bioc-bioccheck_1.38.2+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-bioccheck_1.38.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_dep8.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3238913/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fa940d343f694dca849dbf55845178f1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3238913' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/pbuilderrc_8B1F --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/b1 --logfile b1/build.log r-bioc-bioccheck_1.38.2+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 25 19:07 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3238913/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocbaseutils, r-bioc-biocfilecache, r-cran-biocmanager, r-bioc-biocviews, r-cran-callr, r-cran-codetools, r-bioc-graph, r-cran-httr2, r-cran-knitr, r-cran-rvest, r-cran-stringdist dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19890 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocbaseutils; however: Package r-bioc-biocbaseutils is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocfilecache; however: Package r-bioc-biocfilecache is not installed. pbuilder-satisfydepends-dummy depends on r-cran-biocmanager; however: Package r-cran-biocmanager is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocviews; however: Package r-bioc-biocviews is not installed. pbuilder-satisfydepends-dummy depends on r-cran-callr; however: Package r-cran-callr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-codetools; however: Package r-cran-codetools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-graph; however: Package r-bioc-graph is not installed. pbuilder-satisfydepends-dummy depends on r-cran-httr2; however: Package r-cran-httr2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rvest; however: Package r-cran-rvest is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringdist; however: Package r-cran-stringdist is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocbaseutils{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocviews{a} r-bioc-graph{a} r-bioc-rbgl{a} r-cran-askpass{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-callr{a} r-cran-cli{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-generics{a} r-cran-glue{a} r-cran-highr{a} r-cran-httr{a} r-cran-httr2{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-plogr{a} r-cran-processx{a} r-cran-ps{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcurl{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-runit{a} r-cran-rvest{a} r-cran-selectr{a} r-cran-stringdist{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xml2{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-bioc-biocversion r-cran-bench r-cran-brio r-cran-broom r-cran-bslib r-cran-clipr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-docopt r-cran-formatr r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-gridsvg r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-later r-cran-lattice r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-markdown r-cran-mockery r-cran-mockr r-cran-pingr r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-progress r-cran-r.rsp r-cran-ragg r-cran-rcpp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-tinytex r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webfakes r-cran-webshot r-cran-webutils r-cran-whoami r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 253 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 583 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-1 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-3 [69.1 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian trixie/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1 [109 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-13 [230 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpng16-16 amd64 1.6.43-1 [277 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libcurl4 amd64 8.5.0-2 [427 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0 amd64 2.78.4-1 [1452 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.0+ds-1 [216 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.0+ds-1 [48.0 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.0+ds-1 [35.0 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [108 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4 [308 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.3.2-1 [26.8 MB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgfortran-13-dev amd64 13.2.0-13 [846 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-13 [10.7 MB] Get: 103 http://deb.debian.org/debian trixie/main amd64 gfortran-13 amd64 13.2.0-13 [10.5 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get: 105 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get: 106 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.4+20240414-1 [349 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-3+b1 [152 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2+b2 [290 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-2+b2 [72.1 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.42-4+b1 [234 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.42-4+b1 [55.8 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.42-4+b1 [755 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.43-1 [360 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.3.2-1 [4504 B] Get: 130 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-2+b2 [24.4 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b2 [14.2 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 154 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 155 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 159 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 164 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b2 [20.2 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1 [765 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.63-1+b2 [43.9 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libcurl3-gnutls amd64 8.5.0-2 [419 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libwww-curl-perl amd64 4.17-10+b1 [58.0 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 dh-r all 20231212 [42.2 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-2+b2 [10.6 MB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 180 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 r-bioc-biobase amd64 2.62.0-1 [2119 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocbaseutils all 1.4.0+dfsg-1 [30.9 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.3-1 [1669 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.2-1 [1325 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 r-cran-dbi all 1.2.2-1 [824 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 r-cran-dplyr amd64 1.1.4-1 [1524 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.4.7-1 [219 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1188 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmap amd64 1.1.1-1 [68.9 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 r-cran-cachem amd64 1.0.8-1 [72.0 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 r-cran-rsqlite amd64 2.3.4-1 [1159 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 r-cran-curl amd64 5.2.0+dfsg-1 [176 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [443 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 r-cran-mime amd64 0.12-1+b1 [36.0 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 r-cran-sys amd64 3.4.2-1 [43.7 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 r-cran-askpass amd64 1.2.0-1 [24.0 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [397 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [301 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 r-bioc-graph amd64 1.80.0-1 [1281 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get: 232 http://deb.debian.org/debian trixie/main amd64 r-bioc-rbgl amd64 1.78.0+dfsg-1 [536 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 r-cran-xml amd64 3.99-0.16.1-1 [1751 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [786 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 r-cran-runit all 0.4.33-1 [390 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [126 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocviews all 1.70.0-1 [649 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 r-cran-ps amd64 1.7.6-1 [310 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 r-cran-processx amd64 3.8.3-1 [345 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 r-cran-callr all 3.7.5-1 [430 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 r-cran-evaluate all 0.23-1 [90.6 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 r-cran-xfun amd64 0.43+dfsg-1 [471 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 r-cran-httr2 all 1.0.0-1 [565 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 r-cran-yaml amd64 2.3.8-1 [106 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 r-cran-knitr all 1.46+dfsg-1 [907 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 r-cran-selectr all 0.4-2-2 [412 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 r-cran-xml2 amd64 1.3.6-1 [320 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 r-cran-rvest all 1.0.3-1 [213 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 r-cran-stringdist amd64 0.9.12-1 [578 kB] Fetched 152 MB in 4s (37.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19890 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.1.5-1_amd64.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-3_amd64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.39.3-6_amd64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.0-3_amd64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../025-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../028-libelf1_0.190-1+b1_amd64.deb ... Unpacking libelf1:amd64 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../030-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../031-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-13_amd64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../038-libpaper1_1.1.29_amd64.deb ... Unpacking libpaper1:amd64 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29_amd64.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../041-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../042-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../043-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../044-libpng16-16_1.6.43-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.43-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../045-libfreetype6_2.13.2+dfsg-1+b1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../050-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../052-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../053-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../054-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../055-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../056-libx11-6_2%3a1.8.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../057-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. 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Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.28-1) ... Setting up libblas-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:amd64 (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... 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Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:amd64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up gfortran-13 (13.2.0-13) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libcurl4:amd64 (8.5.0-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up libpango-1.0-0:amd64 (1.52.0+ds-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (8.5.0-2) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7) ... Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.0+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.0+ds-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up libwww-curl-perl:amd64 (4.17-10+b1) ... Setting up debhelper (13.15.3) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-ps (1.7.6-1) ... Setting up r-cran-xml (3.99-0.16.1-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b2) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-filelock (1.0.3-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-curl (5.2.0+dfsg-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-cran-rlang (1.1.3-1) ... Setting up r-base-dev (4.3.2-1) ... Setting up r-cran-xfun (0.43+dfsg-1) ... Setting up r-cran-sys (3.4.2-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.0+dfsg-1) ... Setting up r-cran-processx (3.8.3-1) ... Setting up r-cran-mime (0.12-1+b1) ... Setting up libmoose-perl:amd64 (2.2207-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-yaml (2.3.8-1) ... Setting up r-cran-evaluate (0.23-1) ... Setting up r-cran-dbi (1.2.2-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-cli (3.6.2-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... Setting up r-cran-askpass (1.2.0-1) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-bioc-biobase (2.62.0-1) ... Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-stringi (1.8.3-1) ... Setting up r-cran-stringdist (0.9.12-1) ... Setting up r-cran-cpp11 (0.4.7-1) ... Setting up r-cran-runit (0.4.33-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-knitr (1.46+dfsg-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-bioc-biocbaseutils (1.4.0+dfsg-1) ... Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-bioc-graph (1.80.0-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... Setting up r-cran-openssl (2.1.1+dfsg-2) ... Setting up r-bioc-biocviews (1.70.0-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-cran-callr (3.7.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-selectr (0.4-2-2) ... Setting up r-cran-xml2 (1.3.6-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-httr2 (1.0.0-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-cran-dplyr (1.1.4-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.4-1) ... Setting up r-cran-rvest (1.0.3-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-bioccheck-1.38.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-bioccheck_1.38.2+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-bioccheck dpkg-buildpackage: info: source version 1.38.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-bioccheck/ -O--buildsystem=R I: R Package: BiocCheck Version: 1.38.2 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 29 Jan 2024 20:48:47 +0100 mkdir -p /build/reproducible-path/r-bioc-bioccheck-1.38.2\+dfsg/debian/r-bioc-bioccheck/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-bioccheck-1.38.2\+dfsg/debian/r-bioc-bioccheck/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 29 Jan 2024 20:48:47 +0100'" * installing *source* package 'BiocCheck' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocCheck) W: Ignoring specified R dependency: R (>= 4.3.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-biobase for Suggests:Biobase I: Using r-cran-jsonlite for Suggests:jsonlite I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-downloader for Suggests:downloader I: Using r-cran-devtools for Suggests:devtools (>= 1.4.1) I: Using r-cran-usethis for Suggests:usethis I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-cran-gert for Suggests:gert I: Using r-bioc-biocbaseutils for Imports:BiocBaseUtils I: Using r-bioc-biocfilecache for Imports:BiocFileCache I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-bioc-biocviews for Imports:biocViews (>= 1.33.7) I: Using r-cran-callr for Imports:callr I: Using r-cran-codetools for Imports:codetools I: Using r-bioc-graph for Imports:graph I: Using r-cran-httr2 for Imports:httr2 I: Using r-cran-knitr for Imports:knitr I: Using r-cran-rvest for Imports:rvest I: Using r-cran-stringdist for Imports:stringdist I: BioConductor API version: r-api-bioc-3.18 I: Use r-bioc-bioccheck as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-bioccheck' in '../r-bioc-bioccheck_1.38.2+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-bioccheck_1.38.2+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3238913 and its subdirectories I: Current time: Sun May 25 08:35:02 -12 2025 I: pbuilder-time-stamp: 1748205302 Mon Apr 22 14:12:05 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Apr 22 14:12:05 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Apr 22 14:17:26 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Apr 22 14:17:26 UTC 2024 I: r-bioc-bioccheck_1.38.2+dfsg-1_amd64.changes: Format: 1.8 Date: Mon, 29 Jan 2024 20:48:47 +0100 Source: r-bioc-bioccheck Binary: r-bioc-bioccheck Architecture: all Version: 1.38.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-bioccheck - Bioconductor-specific package checks Changes: r-bioc-bioccheck (1.38.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) Set upstream metadata fields: Archive. Checksums-Sha1: 14b2ab4d65b5fe5202d4ec8ee7bf37707117ebdc 4349984 r-bioc-bioccheck_1.38.2+dfsg-1_all.deb 7e330accab62dd7c84632b48a46be2c01862cfe0 12393 r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo Checksums-Sha256: 548950d9ab4747c8caaa0167555482be3091f3df728f945ee765ee7ed08ee3a5 4349984 r-bioc-bioccheck_1.38.2+dfsg-1_all.deb 63902b3d281c9bfaa921731632c85bbc7a1b7aebb5067d0f9bd3e1ad766c26cc 12393 r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo Files: ceeab34c3714b04c7f7e50b47baab4e7 4349984 gnu-r optional r-bioc-bioccheck_1.38.2+dfsg-1_all.deb 2d84577ddb4a9c42e507843bc914ce20 12393 gnu-r optional r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo Mon Apr 22 14:17:27 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_10-4289.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/r-bioc-bioccheck_1.38.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/r-bioc-bioccheck_1.38.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/r-bioc-bioccheck_1.38.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/b1/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.HGXhbzja/b2/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.369s) 0.369s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.060s) 0.060s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 664ms CPU time consumed: 665ms Mon Apr 22 14:17:28 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 22 14:17:28 UTC 2024 I: r-bioc-bioccheck from trixie built successfully and reproducibly on amd64. Mon Apr 22 14:17:29 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 22 14:17:29 UTC 2024 I: Submitting 16K b1/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo.asc Mon Apr 22 14:17:30 UTC 2024 I: Submitting 16K b2/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo.asc Mon Apr 22 14:17:31 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 22 14:17:31 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 22 14:17:31 UTC 2024 I: Removing signed r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo.asc files: removed './b1/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo.asc' removed './b2/r-bioc-bioccheck_1.38.2+dfsg-1_amd64.buildinfo.asc'