Thu May 9 23:19:02 UTC 2024 I: starting to build qcat/trixie/amd64 on jenkins on '2024-05-09 23:18' Thu May 9 23:19:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/6268/console.log Thu May 9 23:19:02 UTC 2024 I: Downloading source for trixie/qcat=1.1.0-6 --2024-05-09 23:19:02-- http://deb.debian.org/debian/pool/main/q/qcat/qcat_1.1.0-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2220 (2.2K) [text/prs.lines.tag] Saving to: ‘qcat_1.1.0-6.dsc’ 0K .. 100% 321M=0s 2024-05-09 23:19:02 (321 MB/s) - ‘qcat_1.1.0-6.dsc’ saved [2220/2220] Thu May 9 23:19:02 UTC 2024 I: qcat_1.1.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: qcat Binary: qcat, qcat-examples Architecture: all Version: 1.1.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/nanoporetech/qcat Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/qcat Vcs-Git: https://salsa.debian.org/med-team/qcat.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-six , python3-pytest-runner , python3-pytest , python3-pytest-cov , python3-biopython , python3-parasail , python3-yaml Package-List: qcat deb science optional arch=all qcat-examples deb science optional arch=all Checksums-Sha1: bb7a6e01fcb2e8d74564de5b4193ee8c1f161951 8390399 qcat_1.1.0.orig.tar.gz ad0de737c1e36b3efc40a5e1bafc4c7a0d65f34e 5116 qcat_1.1.0-6.debian.tar.xz Checksums-Sha256: a753028525125d5690b6b514938eb199ccd11ad1c60c4bf76284304968c3918b 8390399 qcat_1.1.0.orig.tar.gz be4ca86a43112b0eed2ccf698298cc77046bdfdbdaae2abbd35432cbe88c6fbc 5116 qcat_1.1.0-6.debian.tar.xz Files: 9b348653968dbfd4579f05edd330aa83 8390399 qcat_1.1.0.orig.tar.gz 5faa64105939a9e1ed20eb70bb6f4372 5116 qcat_1.1.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOGZHERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGn5Q/9E85W2DhL6EMn8hG1HIJHK/qb+pHIQMRt hH33nx0gXUZuPSpn1/hbJUlNGYGWea86cl+798bYxXls4snbEOdkyUV8g2fDmulb AMYqXgQ3EY4nCyUEYzFO2+Ym7MatgWmTyeAxizXU6eYBaNvSf+Zk7bcuV4Yk6Xnu PqvX1YLCES4QygfZ21HBFwaTdI7bqS7+T1PEgFPb7w8KIPH+njZKrd8GPPWga3ig 6Y1WSis49IKRGoLsWYBLqBmFRlSmuAYSrUxZWyIMlwUcKR9DgbBiD9s3A/TmT6yk dWdYLIhn+yzYmX7VzahVDHZT703DMZ20CBBKE90fqCnjLGCEuAE9GKn1tUmbJbuC dASfpC73fbzUwulKleZrLEe6e5uVNODHjN/3ylDf0clJsVlv9+RkNHq55UKOhPzn wEnYqVdkHF2c9Onhs0F62gTYReXpqXA+jFYxELOikOza11mygHY0u7KlVUlyzNwA SS2QL8jAFkIiP9Lvua1+GrVncPyR6oIqJRR9d9XZdRuU8yqcUXTvQmo3YfmPG8SE Bw/Tp6OclEm5e9enyvky4rutaimfBAUAAs0gLivfWzeVJJUDIZJ9WwqibUDSwZ2w VrdxPvMX7Vlo49eV+zYjpM9FWZpARjZnkT1zNqcex6JX85FdJyylbZhl/F6Davg0 f+m9+Oyp6Ss= =tjc2 -----END PGP SIGNATURE----- Thu May 9 23:19:02 UTC 2024 I: Checking whether the package is not for us Thu May 9 23:19:02 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu May 9 23:19:02 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu May 9 23:21:53 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 17:42:04 -12 2025 I: pbuilder-time-stamp: 1749706924 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qcat_1.1.0-6.dsc] I: copying [./qcat_1.1.0.orig.tar.gz] I: copying [./qcat_1.1.0-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 29 19:58:41 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./qcat_1.1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting qcat in qcat-1.1.0 dpkg-source: info: unpacking qcat_1.1.0.orig.tar.gz dpkg-source: info: unpacking qcat_1.1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying yaml_safe_load.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2844838/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7dd5ae39ba3f4ff2a4bf0e28472b93a2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2844838' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/pbuilderrc_No5g --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/b1 --logfile b1/build.log qcat_1.1.0-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2844838/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-six, python3-pytest-runner, python3-pytest, python3-pytest-cov, python3-biopython, python3-parasail, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-parasail; however: Package python3-parasail is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libparasail-dev{a} libparasail8{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-distutils{a} python3-freetype{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-parasail{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-runner{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-six{a} python3-wheel{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 72.3 MB of archives. After unpacking 278 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 64 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.80.1-1 [1485 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 89 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libparasail8 amd64 2.6.2+dfsg-1+b1 [1914 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libparasail-dev amd64 2.6.2+dfsg-1+b1 [1496 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-coverage amd64 7.2.7+dfsg1-1+b1 [170 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Fetched 72.3 MB in 1s (50.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21033 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. 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Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../034-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../035-python3-lib2to3_3.12.3-1_all.deb ... Unpacking python3-lib2to3 (3.12.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../036-python3-distutils_3.12.3-1_all.deb ... Unpacking python3-distutils (3.12.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../037-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../038-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../039-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../040-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../041-libfontenc1_1%3a1.1.8-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../042-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../043-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../044-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../045-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../046-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../047-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../048-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../049-fontconfig-config_2.15.0-1.1_amd64.deb ... 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Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libparasail8:amd64 (2.6.2+dfsg-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libparasail-dev:amd64 (2.6.2+dfsg-1+b1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 12 05:43:13 UTC 2025. Universal Time is now: Thu Jun 12 05:43:13 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.80.1-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... 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Setting up python3.12 (3.12.3-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-coverage (7.2.7+dfsg1-1+b1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.1.0-4) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up dh-python (6.20240422) ... Setting up python3-parasail (1.3.3-1) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/qcat-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../qcat_1.1.0-6_source.changes dpkg-buildpackage: info: source package qcat dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/calibration.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_dual.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval_roc.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_epi2me.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/config.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_brill.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_guppy.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_simple.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/__init__.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/utils.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval_full.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/cli.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/layout.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/adapters.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_base.py -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat creating /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources creating /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/simple_extended.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC001_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/VMK001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC096_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/simple_standard.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/DUAL_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RBK004.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/DUAL_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RBK001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC096_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RPB004_RLB001.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_5p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC001_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -r /build/reproducible-path/qcat-1.1.0/qcat/test /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat ; I: pybuild base:311: cd /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build configfile: pytest.ini testpaths: qcat plugins: cov-5.0.0 collecting ... collected 14 items qcat/test/test_barcode.py::test_get_placeholder PASSED [ 7%] qcat/test/test_barcode.py::test_barcode PASSED [ 14%] qcat/test/test_barcode.py::test_scanner_find_best_adapter_template PASSED [ 21%] qcat/test/test_barcode.py::test_barcode_rapidkit PASSED [ 28%] qcat/test/test_barcode.py::test_scanner_detect_barcode_generic PASSED [ 35%] qcat/test/test_barcode.py::test_utils PASSED [ 42%] qcat/test/test_barcode.py::test_scanner_ectract_align_sequence PASSED [ 50%] qcat/test/test_barcode.py::test_adapter_layout PASSED [ 57%] qcat/test/test_barcode.py::test_full_run_rad003 PASSED [ 64%] qcat/test/test_barcode.py::test_full_run_nbd103 PASSED [ 71%] qcat/test/test_barcode.py::test_full_run_pbk004 PASSED [ 78%] qcat/test/test_barcode.py::test_full_run_rab204 PASSED [ 85%] qcat/test/test_barcode.py::test_full_run_rbk004 PASSED [ 92%] qcat/test/test_barcode.py::test_trimming PASSED [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1373 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1373: PytestConfigWarning: Unknown config option: log_print self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") qcat/adapters.py:7 /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/adapters.py:7: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.11.9-final-0 ----------- Name Stmts Miss Cover Missing --------------------------------------------------------- qcat/__init__.py 2 0 100% qcat/adapters.py 102 38 63% 19-24, 28-31, 35-40, 44, 55, 81-83, 104-105, 109-118, 130-132, 134-135, 146-149 qcat/calibration.py 0 0 100% qcat/cli.py 283 222 22% 21-32, 36-39, 43-48, 62-197, 218-231, 256-257, 276-278, 286-302, 306, 311-324, 330-357, 362-363, 367-373, 377-383, 387-404, 419-435, 470-563, 567-575, 587-634, 639 qcat/config.py 106 32 70% 29, 58-59, 78-79, 98-99, 118, 137, 156, 177, 200, 209-234, 263-275 qcat/eval.py 118 118 0% 1-183 qcat/eval_full.py 132 132 0% 1-241 qcat/eval_roc.py 50 50 0% 1-105 qcat/layout.py 108 25 77% 34, 38, 56, 65, 99, 114, 129, 141-143, 155-166, 188, 206, 213, 230, 238 qcat/scanner.py 45 21 53% 10-11, 40-45, 55-60, 70-75, 94-98, 111 qcat/scanner_base.py 284 111 61% 8-11, 24-26, 107, 123, 165-188, 212, 248-255, 279-285, 339, 344, 456, 464, 477, 481-519, 529, 590-591, 594-595, 607-611, 614-616, 620-630, 634-642, 646-654, 658-660, 664-678, 682-689, 693-704, 707-712, 717-733 qcat/scanner_brill.py 77 77 0% 1-138 qcat/scanner_dual.py 41 31 24% 15-29, 33, 56-146 qcat/scanner_epi2me.py 42 9 79% 17, 92, 107-125 qcat/scanner_guppy.py 56 32 43% 13, 46-77, 87-111, 118-120, 125-131 qcat/scanner_simple.py 28 17 39% 14-31, 35, 38-41, 68-87 qcat/test/__init__.py 0 0 100% qcat/test/test_barcode.py 273 5 98% 591-597 qcat/utils.py 22 0 100% --------------------------------------------------------- TOTAL 1769 920 48% ======================= 14 passed, 2 warnings in 16.61s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/qcat-1.1.0/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11 creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.coverage -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache/v creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.pytest_cache/README.md -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/.pytest_cache/.gitignore -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/calibration.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/test_barcode.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__init__.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/test_barcode.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rab204.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nbd103.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rbk004.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/pbk004.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/barcode_1k.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nobarcode_1k.fastq -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_dual.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_roc.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_epi2me.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/config.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_brill.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_extended.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/VMK001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_standard.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK004.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RPB004_RLB001.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_5p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_guppy.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_simple.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__init__.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/utils.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_full.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/cli.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat creating /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_simple.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_base.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/layout.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_epi2me.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/adapters.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_dual.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/cli.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_guppy.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/calibration.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/config.cpython-311.pyc -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/layout.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/adapters.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/reproducible-path/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_base.py -> /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval.py to eval.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/calibration.py to calibration.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/test_barcode.py to test_barcode.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_dual.py to scanner_dual.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_roc.py to eval_roc.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_epi2me.py to scanner_epi2me.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/config.py to config.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_brill.py to scanner_brill.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_guppy.py to scanner_guppy.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_simple.py to scanner_simple.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_full.py to eval_full.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner.py to scanner.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/cli.py to cli.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/layout.py to layout.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/adapters.py to adapters.cpython-311.pyc byte-compiling /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_base.py to scanner_base.cpython-311.pyc running install_egg_info running egg_info creating qcat.egg-info writing qcat.egg-info/PKG-INFO writing dependency_links to qcat.egg-info/dependency_links.txt writing entry points to qcat.egg-info/entry_points.txt writing requirements to qcat.egg-info/requires.txt writing top-level names to qcat.egg-info/top_level.txt writing manifest file 'qcat.egg-info/SOURCES.txt' reading manifest file 'qcat.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'qcat.egg-info/SOURCES.txt' Copying qcat.egg-info to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat-1.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing qcat script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval-truth script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-roc script to /build/reproducible-path/qcat-1.1.0/debian/tmp/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/qcat-1.1.0' dh_install find debian -name .coverage -delete mkdir -p debian/qcat-examples/usr/share/doc/qcat/examples/qcat mv debian/qcat/usr/lib/python3*/dist-packages/qcat/test debian/qcat-examples/usr/share/doc/qcat/examples/qcat find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/qcat-1.1.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'qcat' in '../qcat_1.1.0-6_all.deb'. dpkg-deb: building package 'qcat-examples' in '../qcat-examples_1.1.0-6_all.deb'. dpkg-genbuildinfo --build=binary -O../qcat_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../qcat_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2844838 and its subdirectories I: Current time: Wed Jun 11 17:44:51 -12 2025 I: pbuilder-time-stamp: 1749707091 Thu May 9 23:21:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu May 9 23:21:53 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu May 9 23:27:13 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu May 9 23:27:13 UTC 2024 I: qcat_1.1.0-6_amd64.changes: Format: 1.8 Date: Tue, 29 Nov 2022 20:55:24 +0100 Source: qcat Binary: qcat qcat-examples Architecture: all Version: 1.1.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: qcat - demultiplexing Oxford Nanopore reads from FASTQ files qcat-examples - demultiplexing Oxford Nanopore reads from FASTQ files (examples) Changes: qcat (1.1.0-6) unstable; urgency=medium . * Fix watch file * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: d38f9bee59d103b2a9780f1f6ed8f2822e9337ca 8242360 qcat-examples_1.1.0-6_all.deb 09e2279a9735cb0b71f90a1cf1789b2cfd55439c 31204 qcat_1.1.0-6_all.deb 45581e492e8d63088d0dffadfbd4f0c5507c3b69 8167 qcat_1.1.0-6_amd64.buildinfo Checksums-Sha256: 92e4b489b9e3efe482d044d9eefefa09bcae53680e84ae02dbb1a77c87897592 8242360 qcat-examples_1.1.0-6_all.deb 4c02565d0897cc32de50f3b14b3f03cbdbfe4177ce11e9e778270c80596930fe 31204 qcat_1.1.0-6_all.deb 3cb0ea1185f195920cc7448ffaf8348a9758714bb074ad9a306fa21110b7e42f 8167 qcat_1.1.0-6_amd64.buildinfo Files: c6c228ec9ee62c8d5f3cbfee32f7a7eb 8242360 science optional qcat-examples_1.1.0-6_all.deb 355b793e0f672b9a2a0d56d72346f60b 31204 science optional qcat_1.1.0-6_all.deb 400e411229cbf63aa2c36c00a927ea35 8167 science optional qcat_1.1.0-6_amd64.buildinfo Thu May 9 23:27:15 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-6268.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/qcat_1.1.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/qcat_1.1.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/qcat_1.1.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/b1/qcat_1.1.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ke8KtcbA/b2/qcat_1.1.0-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.490s) 0.490s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.101s) 0.101s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 858ms CPU time consumed: 855ms Thu May 9 23:27:16 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 23:27:16 UTC 2024 I: qcat from trixie built successfully and reproducibly on amd64. Thu May 9 23:27:17 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 23:27:17 UTC 2024 I: Submitting 12K b1/qcat_1.1.0-6_amd64.buildinfo.asc Thu May 9 23:27:18 UTC 2024 I: Submitting 12K b2/qcat_1.1.0-6_amd64.buildinfo.asc Thu May 9 23:27:20 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 23:27:20 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 23:27:20 UTC 2024 I: Removing signed qcat_1.1.0-6_amd64.buildinfo.asc files: removed './b1/qcat_1.1.0-6_amd64.buildinfo.asc' removed './b2/qcat_1.1.0-6_amd64.buildinfo.asc'