Sun May 5 14:38:20 UTC 2024 I: starting to build python-gffutils/trixie/amd64 on jenkins on '2024-05-05 14:38' Sun May 5 14:38:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/6434/console.log Sun May 5 14:38:20 UTC 2024 I: Downloading source for trixie/python-gffutils=0.13-1 --2024-05-05 14:38:20-- http://deb.debian.org/debian/pool/main/p/python-gffutils/python-gffutils_0.13-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2351 (2.3K) [text/prs.lines.tag] Saving to: ‘python-gffutils_0.13-1.dsc’ 0K .. 100% 321M=0s 2024-05-05 14:38:20 (321 MB/s) - ‘python-gffutils_0.13-1.dsc’ saved [2351/2351] Sun May 5 14:38:20 UTC 2024 I: python-gffutils_0.13-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-gffutils Binary: python3-gffutils Architecture: all Version: 0.13-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://daler.github.io/gffutils Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-gffutils Vcs-Git: https://salsa.debian.org/med-team/python-gffutils.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, bedtools, python3-all, python3-setuptools, python3-simplejson, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man Package-List: python3-gffutils deb science optional arch=all Checksums-Sha1: 1a4b4308dea940cc8306d3d75ea0b760e6abbe9d 1560489 python-gffutils_0.13.orig.tar.gz 76696bd5c5f86ae045f146e93b1e2c0f4bf183e5 5024 python-gffutils_0.13-1.debian.tar.xz Checksums-Sha256: b0d52f35c014cc0330fb5c4e3c6fea127c90ccf4c5384a825cdb5c8ff330d4eb 1560489 python-gffutils_0.13.orig.tar.gz 8faf11a673c505ac5180546cb3ad221dce9ba75afbc486ae807e92b8673d4b97 5024 python-gffutils_0.13-1.debian.tar.xz Files: 13970382f37c65378765b7a5e522b9ec 1560489 python-gffutils_0.13.orig.tar.gz c11942bf1f8559feeeccfd3d558efc0c 5024 python-gffutils_0.13-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmYa6kkRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBpJ4Q//XRsZh+P4EVArIe0eH5Xb6HYDBuY/pfX9 kTLR6f2pPHm2WHU3Xo+auTQmdNXC9adifkqaQ2Jhw4tdZm8vh2+C96Ymythy6/EW GUz6h0fVU5sSghyK8uB1jUT9rjehAVFsSBFfz5jDmykmPoJ1acezRCHZNbCH5HVT OrF/4VgqG3hsKv3miPtRaIKVtEGFEe6FSW1Jp7CiHqdtOyhEoVHqhI0qfLqCIzux JTDPQKtIaCmFImUbV2/JgytAmJCz1LDH46RPPRDxxFzbExKK6U0uXnyOJJQMQ/Ps 1M+A6/pIzOgwpOAqgXiV/eOcyoDTw2UoBvXDqDvzJVeWtlQvr47rD4FKlk5GT4JB G/LuUa0wZeNpumfgXxESK67KzLEzL3VNTy+7fnNYjQhQK6KlgM/EUWiRluXw6PWo oj7aHs8q7aSzaY4dHvfVyrWY38NbO8KL/8LGTxU4AaL5zDNTxMNQMv6hWtgDnl/G X8DgHtCgg4BpxEbTKdQkDrsx/eHROI3f5k1FjRP0Rp0i7JPadjKtY1xVLGQ0gC4W o3xvps3fct+awtAXimSnEDhnjLXOu4spWQExGSO0fyvg8d5McVgB6ATpMWFYm4H2 bKV6xhqOfsxXsxEetHhn7Ux9MjVOLN8yb1w8Mu4WqurJX50xYMJs6bp7KT8OBDl+ k2i1pbllWdM= =7Njn -----END PGP SIGNATURE----- Sun May 5 14:38:21 UTC 2024 I: Checking whether the package is not for us Sun May 5 14:38:21 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun May 5 14:38:21 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun May 5 14:40:41 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 7 09:01:23 -12 2025 I: pbuilder-time-stamp: 1749330083 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-gffutils_0.13-1.dsc] I: copying [./python-gffutils_0.13.orig.tar.gz] I: copying [./python-gffutils_0.13-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Apr 13 20:25:45 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-1.dsc: no acceptable signature found dpkg-source: info: extracting python-gffutils in python-gffutils-0.13 dpkg-source: info: unpacking python-gffutils_0.13.orig.tar.gz dpkg-source: info: unpacking python-gffutils_0.13-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3 dpkg-source: info: applying fix-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2369588/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='502ca58e62a0470aa7eaed345b650015' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2369588' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/pbuilderrc_NHFI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/b1 --logfile b1/build.log python-gffutils_0.13-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2369588/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, bedtools, python3-all, python3-setuptools, python3-simplejson, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on python3-argcomplete; however: Package python3-argcomplete is not installed. pbuilder-satisfydepends-dummy depends on python3-argh; however: Package python3-argh is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however: Package python3-pyfaidx is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pybedtools; however: Package python3-pybedtools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-argcomplete{a} python3-argh{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-distutils{a} python3-freetype{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pybedtools{a} python3-pyfaidx{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 88.1 MB of archives. After unpacking 315 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 64 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-argcomplete all 3.3.0-1 [38.9 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-argh all 0.31.2-1 [26.5 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.0+ds-1+b2 [4646 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-pybedtools amd64 0.9.1-1+b1 [12.3 MB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-pyfaidx all 0.8.1.1-2 [29.0 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Fetched 88.1 MB in 2s (57.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20025 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21017 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package bedtools. Preparing to unpack .../019-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../027-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../035-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../036-python3-lib2to3_3.12.3-1_all.deb ... Unpacking python3-lib2to3 (3.12.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../037-python3-distutils_3.12.3-1_all.deb ... Unpacking python3-distutils (3.12.3-1) ... 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Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-argcomplete (3.3.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-argh (0.31.2-1) ... Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.8-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.1.0-4) ... Setting up dh-python (6.20240422) ... Setting up python3-pybedtools (0.9.1-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pyfaidx (0.8.1.1-2) ... Processing triggers for libc-bin (2.37-19) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-gffutils-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gffutils_0.13-1_source.changes dpkg-buildpackage: info: source package python-gffutils dpkg-buildpackage: info: source version 0.13-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' dh_auto_build I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data running build_scripts creating build creating build/scripts-3.12 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.12 changing mode of build/scripts-3.12/gffutils-cli from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data running build_scripts creating build/scripts-3.11 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.11 changing mode of build/scripts-3.11/gffutils-cli from 644 to 755 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --name="Command line interface for python-gffutils." \ gffutils-cli > debian/gffutils-cli.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \ 'gffutils-cli fetch' > debian/gffutils-cli-fetch.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \ 'gffutils-cli children' > debian/gffutils-cli-children.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \ 'gffutils-cli parents' > debian/gffutils-cli-parents.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \ 'gffutils-cli region' > debian/gffutils-cli-region.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \ 'gffutils-cli create' > debian/gffutils-cli-create.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \ 'gffutils-cli common' > debian/gffutils-cli-common.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \ 'gffutils-cli clean' > debian/gffutils-cli-clean.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \ 'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1 PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.13 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \ 'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1 make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build; python3.12 -m pytest --doctest-modules -m 'not slow' ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-gffutils-0.13 collected 112 items gffutils/attributes.py . [ 0%] gffutils/pybedtools_integration.py . [ 1%] gffutils/test/feature_test.py ........... [ 11%] gffutils/test/helpers_test.py .. [ 13%] gffutils/test/parser_test.py .................. [ 29%] gffutils/test/test_1.py ...........x..........s........... [ 59%] gffutils/test/test_biopython_integration.py . [ 60%] gffutils/test/test_cli.py . [ 61%] gffutils/test/test_issues.py ........................ [ 83%] gffutils/test/test_iterators.py .... [ 86%] gffutils/test/test_merge.py ......... [ 94%] gffutils/test/test_merge_all.py ...... [100%] =============================== warnings summary =============================== gffutils/test/performance_evaluation.py:190 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow gffutils/test/performance_evaluation.py:208 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485 .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string /usr/lib/python3/dist-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py::test_pr_172 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 2.47s ============= I: pybuild pybuild:334: find . -name tmp.db -delete I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build; python3.11 -m pytest --doctest-modules -m 'not slow' ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-gffutils-0.13 collected 112 items gffutils/attributes.py . [ 0%] gffutils/pybedtools_integration.py . [ 1%] gffutils/test/feature_test.py ........... [ 11%] gffutils/test/helpers_test.py .. [ 13%] gffutils/test/parser_test.py .................. [ 29%] gffutils/test/test_1.py ...........x..........s........... [ 59%] gffutils/test/test_biopython_integration.py . [ 60%] gffutils/test/test_cli.py . [ 61%] gffutils/test/test_issues.py ........................ [ 83%] gffutils/test/test_iterators.py .... [ 86%] gffutils/test/test_merge.py ......... [ 94%] gffutils/test/test_merge_all.py ...... [100%] =============================== warnings summary =============================== gffutils/test/performance_evaluation.py:190 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow gffutils/test/performance_evaluation.py:208 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py:485 .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string /usr/lib/python3/dist-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py::test_disable_infer .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py::test_pr_172 /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py::test_disable_infer /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 2.42s ============= I: pybuild pybuild:334: find . -name tmp.db -delete make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-gffutils/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12 creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/conftest.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_1.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/expected.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/inspect.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/exceptions.py to exceptions.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_1.py to test_1.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/expected.py to expected.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/conftest.py to conftest.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/helpers.py to helpers.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/feature.py to feature.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/inspect.py to inspect.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/create.py to create.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/iterators.py to iterators.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/interface.py to interface.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/constants.py to constants.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/bins.py to bins.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/convert.py to convert.cpython-312.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/attributes.py to attributes.cpython-312.pyc running install_egg_info running egg_info creating gffutils.egg-info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt writing manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils-0.13.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin copying build/scripts-3.12/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11 creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_1.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/expected.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/conftest.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/convert.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/feature.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/iterators.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/attributes.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/interface.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/constants.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/parser.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/gffwriter.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/create.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/inspect.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/bins.cpython-311.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.11_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/exceptions.py to exceptions.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_1.py to test_1.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/expected.py to expected.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/conftest.py to conftest.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/helpers.py to helpers.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/parser.py to parser.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/feature.py to feature.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/version.py to version.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/inspect.py to inspect.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/create.py to create.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/iterators.py to iterators.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/interface.py to interface.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/constants.py to constants.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/bins.py to bins.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/convert.py to convert.cpython-311.pyc byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/attributes.py to attributes.cpython-311.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils-0.13.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13' dh_install find debian -name "*.bak" -delete find debian -name "issue_*.db" -delete make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-gffutils' in '../python3-gffutils_0.13-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-gffutils_0.13-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-gffutils_0.13-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2369588 and its subdirectories I: Current time: Sat Jun 7 09:03:40 -12 2025 I: pbuilder-time-stamp: 1749330220 Sun May 5 14:40:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun May 5 14:40:42 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun May 5 14:51:37 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun May 5 14:51:37 UTC 2024 I: python-gffutils_0.13-1_amd64.changes: Format: 1.8 Date: Sat, 13 Apr 2024 20:40:16 +0200 Source: python-gffutils Binary: python3-gffutils Architecture: all Version: 0.13-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-gffutils - Work with GFF and GTF files in a flexible database framework Changes: python-gffutils (0.13-1) unstable; urgency=medium . * Team Upload. * Standards-Version: 4.7.0 (routine-update) * Refresh patches * Remove dependency on python3-six . [ Michael R. Crusoe ] * d/patches/pytest8: applied upstream. Checksums-Sha1: 6fb308764e620d26fcbd5a92309361640d81f46f 8524 python-gffutils_0.13-1_amd64.buildinfo 61e1e8853ccc08a11e3bd997e2b495a6f2678420 1040588 python3-gffutils_0.13-1_all.deb Checksums-Sha256: 70b7c101d1ac3d54565abff7dec3d3bcde18a7d2d80528e0d4a93396aead79c7 8524 python-gffutils_0.13-1_amd64.buildinfo 7ba91f0065c068f3a6edd5c7e7535be9ccde043581be6cba817cd6442ddc9494 1040588 python3-gffutils_0.13-1_all.deb Files: 7530f9cf08e5ea0ee0debfafe3550404 8524 science optional python-gffutils_0.13-1_amd64.buildinfo 5f8ed065cdc0eb30ba068f51b8a2a64c 1040588 science optional python3-gffutils_0.13-1_all.deb Sun May 5 14:51:39 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_22-6434.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/python-gffutils_0.13-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/python-gffutils_0.13-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/python-gffutils_0.13-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/b1/python-gffutils_0.13-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.p7KjMEeT/b2/python-gffutils_0.13-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.419s) 0.419s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 804ms CPU time consumed: 804ms Sun May 5 14:51:40 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sun May 5 14:51:40 UTC 2024 I: python-gffutils from trixie built successfully and reproducibly on amd64. Sun May 5 14:51:42 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 5 14:51:42 UTC 2024 I: Submitting 12K b1/python-gffutils_0.13-1_amd64.buildinfo.asc Sun May 5 14:51:42 UTC 2024 I: Submitting 12K b2/python-gffutils_0.13-1_amd64.buildinfo.asc Sun May 5 14:51:43 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 5 14:51:43 UTC 2024 I: Done submitting .buildinfo files. Sun May 5 14:51:43 UTC 2024 I: Removing signed python-gffutils_0.13-1_amd64.buildinfo.asc files: removed './b1/python-gffutils_0.13-1_amd64.buildinfo.asc' removed './b2/python-gffutils_0.13-1_amd64.buildinfo.asc'