Tue Oct 22 06:56:03 UTC 2024 I: starting to build python-cooler/trixie/amd64 on jenkins on '2024-10-22 06:55' Tue Oct 22 06:56:03 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/31164/console.log Tue Oct 22 06:56:03 UTC 2024 I: Downloading source for trixie/python-cooler=0.10.2-1 --2024-10-22 06:56:04-- http://deb.debian.org/debian/pool/main/p/python-cooler/python-cooler_0.10.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2846 (2.8K) [text/prs.lines.tag] Saving to: ‘python-cooler_0.10.2-1.dsc’ 0K .. 100% 354M=0s 2024-10-22 06:56:04 (354 MB/s) - ‘python-cooler_0.10.2-1.dsc’ saved [2846/2846] Tue Oct 22 06:56:04 UTC 2024 I: python-cooler_0.10.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cooler Binary: python3-cooler, python3-cooler-examples Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha all Version: 0.10.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/mirnylab/cooler Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-cooler Vcs-Git: https://salsa.debian.org/med-team/python-cooler.git Testsuite: autopkgtest Testsuite-Triggers: python3-dask, python3-mock, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-hatchling, python3-hatch-vcs, python3-simplejson , python3-pandas (>= 2.1) , python3-scipy (>= 1.10~) , python3-h5py , python3-asciitree , python3-multiprocess , python3-click , python3-cytoolz , python3-pytest , python3-biopython , python3-pyfaidx , python3-pysam , python3-pairix , python3-yaml , python3-dask Package-List: python3-cooler deb python optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha python3-cooler-examples deb python optional arch=all Checksums-Sha1: 68adc23948946c831527991dfc3f0cc3ab15896b 11359170 python-cooler_0.10.2.orig.tar.gz 41a50f3d0690277e0d59b6f3a4c9b318eb08cc77 7488 python-cooler_0.10.2-1.debian.tar.xz Checksums-Sha256: 8410a1bdb1d77fff236910c8f53f234e3c2ef1c40d62f928378273cf40afd2b7 11359170 python-cooler_0.10.2.orig.tar.gz f60c48dfb8086c9b990ab46792bb362e9d0f6b6e5e91a5ac24fe1d40abddf66d 7488 python-cooler_0.10.2-1.debian.tar.xz Files: ef543e1b6a4eb5d8e781f58f7cdc2a31 11359170 python-cooler_0.10.2.orig.tar.gz 708bc9ba1a1d64c28e33f27ca9238204 7488 python-cooler_0.10.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbSSoARHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBpotg//X/xCgvg9r4C8xAQk9LgrV6Xzy5nRw8qF CtQb2zEb72PR1Ab2iYzxDtaehwxvjJaK6JQ6DtM7qahqHcvtrw+H96qRdvr4WnbD Mc5WkRp9YPa73RtdeCEp17ldWWObMzGxUeqo9eDq6osRONCmrKZgE3pM/LO603ng p7qoE8D/P9NqKb6Ut4KOqgVennTSU6BtkEgrtyuol6G12WdzfbTHMJpyLxQdIPB1 8/y/arLi22BBcpFZk6LJ03GYgi7mJ16L3wro1ZFbceiueSLhxps4XH2DuQyunFrr 7U6Ui6y35w5Enpm35gnd+g56jFnALfQacP3VTPmXZSirPO6vWsoeft0fyURThi9s Q3oSfxx11K9vmMhURpus1nykKqwm4AGBtRgHnAIm3x5JY1ISAJIJfR0deJK60EIY B74eBHA/o8NmsHZJ07T0soLvGz+4iC6OPiGOdwTuZ2aufxyKcGOGyulnYbP4+G0x AXIuCqx4bOztsOaAZbJLB6ODHxm5r0RNkqnlFdz5EC7l0mfpEs6gIuLm9TcGBta9 KUTkCNEpszfVA8fDuxvNppxzfzmJw2Sy7YvqZIMFyUSw3c+pXZblP3yPCZoYV1AM JVVdYkwulf8r/Du0JoiPMT5AIxZx4AttgrzbCuie7GO05xHcXQL+Vx06l/ga8cKp A+Q+iBn2Qts= =B6Eo -----END PGP SIGNATURE----- Tue Oct 22 06:56:04 UTC 2024 I: Checking whether the package is not for us Tue Oct 22 06:56:04 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Tue Oct 22 06:56:04 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Tue Oct 22 07:01:52 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 24 01:19:06 -12 2025 I: pbuilder-time-stamp: 1763990346 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cooler_0.10.2-1.dsc] I: copying [./python-cooler_0.10.2.orig.tar.gz] I: copying [./python-cooler_0.10.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 30 22:41:04 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cooler_0.10.2-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cooler in python-cooler-0.10.2 dpkg-source: info: unpacking python-cooler_0.10.2.orig.tar.gz dpkg-source: info: unpacking python-cooler_0.10.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_tests_in_need_of_ipytree.patch dpkg-source: info: applying skip-http-connection.patch dpkg-source: info: applying pytest-coverage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4063861/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='27fa83d88f2b4ca3992a084d9275f0b9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4063861' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/pbuilderrc_0Z7r --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/b1 --logfile b1/build.log python-cooler_0.10.2-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4063861/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-hatchling, python3-hatch-vcs, python3-simplejson, python3-pandas (>= 2.1), python3-scipy (>= 1.10~), python3-h5py, python3-asciitree, python3-multiprocess, python3-click, python3-cytoolz, python3-pytest, python3-biopython, python3-pyfaidx, python3-pysam, python3-pairix, python3-yaml, python3-dask dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-hatchling; however: Package python3-hatchling is not installed. pbuilder-satisfydepends-dummy depends on python3-hatch-vcs; however: Package python3-hatch-vcs is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 2.1); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.10~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-asciitree; however: Package python3-asciitree is not installed. pbuilder-satisfydepends-dummy depends on python3-multiprocess; however: Package python3-multiprocess is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-cytoolz; however: Package python3-cytoolz is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however: Package python3-pyfaidx is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pairix; however: Package python3-pairix is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-dask; however: Package python3-dask is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-asciitree{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-click{a} python3-cloudpickle{a} python3-colorama{a} python3-cytoolz{a} python3-dask{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-freetype{a} python3-fsspec{a} python3-h5py{a} python3-h5py-serial{a} python3-hatch-vcs{a} python3-hatchling{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-locket{a} python3-minimal{a} python3-more-itertools{a} python3-multiprocess{a} python3-numpy{a} python3-packaging{a} python3-pairix{a} python3-pandas{a} python3-pandas-lib{a} python3-partd{a} python3-pathspec{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyfaidx{a} python3-pyproject-hooks{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-toml{a} python3-toolz{a} python3-trove-classifiers{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra git krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-blosc python3-bottleneck python3-bs4 python3-distributed python3-dropbox python3-fusepy python3-html5lib python3-jinja2 python3-libarchive-c python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-paramiko python3-pygit2 python3-pygments python3-requests python3-tables python3-zmq shared-mime-info wget xdg-user-dirs 0 packages upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 96.2 MB of archives. After unpacking 403 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-importlib-metadata all 8.5.0-1 [21.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240824 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.1-1 [1499 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 9.0.0-1 [474 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-asciitree all 0.3.3-4 [5612 B] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2 [114 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 144 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-3 [1645 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3-cloudpickle all 3.0.0-2 [25.4 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 python3-toolz all 1.0.0-1 [44.1 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 python3-cytoolz amd64 1.0.0-1 [291 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 python3-fsspec all 2024.9.0-1 [206 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 python3-locket all 1.0.0-2 [5820 B] Get: 155 http://deb.debian.org/debian trixie/main amd64 python3-partd all 1.4.2-1 [15.4 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-dask all 2024.5.2+dfsg-1 [946 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 python3-dill all 0.3.8-1 [81.7 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-trove-classifiers all 2024.9.12-1 [10.2 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-hatchling all 1.25.0-1 [53.8 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 169 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 170 http://deb.debian.org/debian trixie/main amd64 python3-multiprocess all 0.70.16-2 [105 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 python3-pairix amd64 0.3.8-1 [41.7 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-4 [4388 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 python3-pyfaidx all 0.8.1.3-1 [29.1 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.1+ds-2+b1 [3474 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-simplejson amd64 3.19.3-1 [61.2 kB] Fetched 96.2 MB in 3s (29.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20119 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up python3-cytoolz (1.0.0-1) ... /usr/lib/python3/dist-packages/cytoolz/tests/test_inspect_args.py:505: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? assert num_required_args(Wrapped) is 1 Setting up python3-partd (1.4.2-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pairix:amd64 (0.3.8-1) ... Setting up python3-pysam (0.22.1+ds-2+b1) ... Setting up python3-cairo (1.26.1-2) ... Setting up python3-importlib-metadata (8.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-fsspec (2024.9.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... 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Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cooler-0.10.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cooler_0.10.2-1_source.changes dpkg-buildpackage: info: source package python-cooler dpkg-buildpackage: info: source version 0.10.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler * Building wheel... Successfully built cooler-0.10.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build configfile: pyproject.toml plugins: typeguard-4.3.0 collected 140 items tests/test_api.py ........... [ 7%] tests/test_balance.py .... [ 10%] tests/test_cli.py .s..s..... [ 17%] tests/test_cli_export.py ..s [ 20%] tests/test_cli_fileops.py .... [ 22%] tests/test_cli_ingest.py ........... [ 30%] tests/test_cli_ops.py .... [ 33%] tests/test_core.py ........... [ 41%] tests/test_create.py .s....... [ 47%] tests/test_create_ingest.py .................. [ 60%] tests/test_create_sanitize.py ........ [ 66%] tests/test_fileops.py ........s.. [ 74%] tests/test_parallel.py ... [ 76%] tests/test_reduce.py .......... [ 83%] tests/test_util.py .........s............. [100%] =============================== warnings summary =============================== tests/test_balance.py::test_balancing_other_options[/build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/tests/data/toy.symm.upper.2.cool-0.01] tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/cooler/balance.py:117: RuntimeWarning: Mean of empty slice. scale = nzmarg.mean() tests/test_balance.py::test_balancing_other_options[/build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/tests/data/toy.symm.upper.2.cool-0.01] tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify tests/test_cli_ops.py::test_zoomify /usr/lib/python3/dist-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in scalar divide ret = ret.dtype.type(ret / rcount) tests/test_cli_export.py::test_dump /usr/lib/python3/dist-packages/dask/dataframe/__init__.py:31: FutureWarning: Dask dataframe query planning is disabled because dask-expr is not installed. You can install it with `pip install dask[dataframe]` or `conda install dask`. This will raise in a future version. warnings.warn(msg, FutureWarning) tests/test_cli_export.py: 1 warning tests/test_create.py: 1 warning tests/test_reduce.py: 15 warnings /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/cooler/create/_create.py:594: UserWarning: Creating a non-symmetric matrix, but `triucheck` was set to True. Changing to False. warnings.warn( tests/test_cli_ops.py::test_zoomify /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/cooler/cli/zoomify.py:198: UserWarning: Map is already < 256 x 256. Provide resolutions explicitly if you want to coarsen more. warnings.warn( tests/test_cli_ops.py::test_balance tests/test_cli_ops.py::test_balance tests/test_cli_ops.py::test_balance /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/cooler/balance.py:113: ConvergenceWarning: Iteration limit reached without convergence. warnings.warn( tests/test_create_ingest.py: 8 warnings tests/test_reduce.py: 6 warnings /usr/lib/python3/dist-packages/multiprocess/popen_fork.py:66: DeprecationWarning: This process (pid=4082390) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() tests/test_reduce.py::test_merge2 /build/reproducible-path/python-cooler-0.10.2/.pybuild/cpython3_3.12_cooler/build/cooler/reduce.py:126: UserWarning: 16 merge epochs will require buffering more than 3 pixel records, with as many as 6. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 134 passed, 6 skipped, 53 warnings in 35.63s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_after_dh_installexamples-indep make[1]: Entering directory '/build/reproducible-path/python-cooler-0.10.2' cd /build/reproducible-path/python-cooler-0.10.2/debian/python3-cooler-examples/usr/share/doc/python3-cooler \ && tar --create \ --owner=0 --group=0 --numeric-owner \ --sort=name --mtime="@1725056210" \ --mode=u=wrX,og=rX \ --xz \ --file tests.tar.xz tests \ && rm -rf tests make[1]: Leaving directory '/build/reproducible-path/python-cooler-0.10.2' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:325: Ignoring complex environment marker: pypairix; (platform_system != 'Windows') and extra == 'all' I: dh_python3 pydist:325: Ignoring complex environment marker: pysam; (platform_system != 'Windows') and extra == 'all' I: dh_python3 pydist:325: Ignoring complex environment marker: pypairix; (platform_system != 'Windows') and extra == 'dev' I: dh_python3 pydist:325: Ignoring complex environment marker: pysam; (platform_system != 'Windows') and extra == 'dev' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-cooler-0.10.2' dh_fixperms find debian -type f -path "*/cli/*" \( -name "makebins.py" -o -name "balance.py" \) -exec chmod 0644 {} \; make[1]: Leaving directory '/build/reproducible-path/python-cooler-0.10.2' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cooler-examples: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cooler' in '../python3-cooler_0.10.2-1_amd64.deb'. dpkg-deb: building package 'python3-cooler-examples' in '../python3-cooler-examples_0.10.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cooler_0.10.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cooler_0.10.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4063861 and its subdirectories I: Current time: Mon Nov 24 01:24:50 -12 2025 I: pbuilder-time-stamp: 1763990690 Tue Oct 22 07:01:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Tue Oct 22 07:01:52 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Tue Oct 22 07:04:35 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Tue Oct 22 07:04:36 UTC 2024 I: python-cooler_0.10.2-1_amd64.changes: Format: 1.8 Date: Sat, 31 Aug 2024 00:16:50 +0200 Source: python-cooler Binary: python3-cooler python3-cooler-examples Architecture: all amd64 Version: 0.10.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-cooler - library for a sparse, compressed, binary persistent storage python3-cooler-examples - library for a sparse, compressed, binary persistent storage (exam Changes: python-cooler (0.10.2-1) unstable; urgency=medium . * Team upload. * New upstream version 0.10.2 * Use dh-sequence-python3 Checksums-Sha1: 823d217156ed849746ba3b6acb1727e512a33b16 9815 python-cooler_0.10.2-1_amd64.buildinfo fc59578b95788a21854e5160b85468ade26e9ac1 9242324 python3-cooler-examples_0.10.2-1_all.deb d072cef5f0f49de467800c2783556bfbf8360f45 87996 python3-cooler_0.10.2-1_amd64.deb Checksums-Sha256: c847bbb0e21fb541f07a71f404b65433cef0411f694dee4549eb1faa64942f84 9815 python-cooler_0.10.2-1_amd64.buildinfo 3150ef29f900cb16ee9f10fd3edcaa0ec5254678085738a338630054cdc72c4b 9242324 python3-cooler-examples_0.10.2-1_all.deb ac04d25b66991f28b8e2ef37a1197f1b8aa6e4a7fd22adba008f5f0aecd1b537 87996 python3-cooler_0.10.2-1_amd64.deb Files: 318cee33242967d51b770ef90c7184f7 9815 science optional python-cooler_0.10.2-1_amd64.buildinfo 6e13259eb2394ecf45bb533eb924a902 9242324 python optional python3-cooler-examples_0.10.2-1_all.deb 5ff14270cfa314b1b664ac6d3e50190a 87996 python optional python3-cooler_0.10.2-1_amd64.deb Tue Oct 22 07:04:37 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-31164.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/python-cooler_0.10.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/python-cooler_0.10.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/python-cooler_0.10.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/b1/python-cooler_0.10.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hWIJS2DJ/b2/python-cooler_0.10.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.520s) 0.520s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.115s) 0.115s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 894ms CPU time consumed: 885ms Tue Oct 22 07:16:00 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 22 07:16:00 UTC 2024 I: python-cooler from trixie built successfully and reproducibly on amd64. Tue Oct 22 07:16:02 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 22 07:16:02 UTC 2024 I: Submitting 12K b1/python-cooler_0.10.2-1_amd64.buildinfo.asc Tue Oct 22 07:16:05 UTC 2024 I: Submitting 12K b2/python-cooler_0.10.2-1_amd64.buildinfo.asc Tue Oct 22 07:16:20 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 22 07:16:20 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 22 07:16:20 UTC 2024 I: Removing signed python-cooler_0.10.2-1_amd64.buildinfo.asc files: removed './b1/python-cooler_0.10.2-1_amd64.buildinfo.asc' removed './b2/python-cooler_0.10.2-1_amd64.buildinfo.asc'