Sat May 4 06:25:42 UTC 2024 I: starting to build python-bioframe/trixie/amd64 on jenkins on '2024-05-04 06:25' Sat May 4 06:25:42 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/18941/console.log Sat May 4 06:25:42 UTC 2024 I: Downloading source for trixie/python-bioframe=0.4.1-1 --2024-05-04 06:25:42-- http://deb.debian.org/debian/pool/main/p/python-bioframe/python-bioframe_0.4.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1611 (1.6K) [text/prs.lines.tag] Saving to: ‘python-bioframe_0.4.1-1.dsc’ 0K . 100% 204M=0s 2024-05-04 06:25:42 (204 MB/s) - ‘python-bioframe_0.4.1-1.dsc’ saved [1611/1611] Sat May 4 06:25:42 UTC 2024 I: python-bioframe_0.4.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-bioframe Binary: python3-bioframe Architecture: all Version: 0.4.1-1 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/open2c/bioframe Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-bioframe Vcs-Git: https://salsa.debian.org/med-team/python-bioframe.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest , python3-requests, python3-setuptools, python3-wheel Package-List: python3-bioframe deb science optional arch=all Checksums-Sha1: e776d6f6c526de088e69795b66ac6dda9d64ff4d 815763 python-bioframe_0.4.1.orig.tar.gz c303cf255be12ae8f66def13658dcbb0f804bcf7 3464 python-bioframe_0.4.1-1.debian.tar.xz Checksums-Sha256: 46317c8b663065ba84f18f64e14c9f6c58defdfa649aedf155a31435d0a0f710 815763 python-bioframe_0.4.1.orig.tar.gz 6af9f18a40ee672e73ed9ec33f8482726989462ac003e1f833788cd097bb3b90 3464 python-bioframe_0.4.1-1.debian.tar.xz Files: 55755babf1289bb7bdd5538e2bcced10 815763 python-bioframe_0.4.1.orig.tar.gz 48f7be0ca3328fe197c66b844455066d 3464 python-bioframe_0.4.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZIdcIgAKCRAqJ5BL1yQ+ 2uypAQCD2zEicNks+2k3d3tQqNPxrNkVrhDo0r6y8kXGsMJCUQD7B8Y4cp2Gh8mL 0cNfd47RRhybDTEfp/8T2bMSZIqZ8gc= =2Gk0 -----END PGP SIGNATURE----- Sat May 4 06:25:42 UTC 2024 I: Checking whether the package is not for us Sat May 4 06:25:42 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat May 4 06:25:42 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat May 4 06:32:48 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 6 00:53:54 -12 2025 I: pbuilder-time-stamp: 1749214434 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-1.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 12 17:55:46 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3519439/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='91946781c54944f0a1b7b69a7d1ce84f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3519439' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/pbuilderrc_putQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/b1 --logfile b1/build.log python-bioframe_0.4.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 14:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3519439/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After unpacking 518 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.12-7 [3869 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 129 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Fetched 117 MB in 1s (119 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20011 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21003 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. 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Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../020-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../021-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../022-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../023-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../026-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../027-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../028-libxau6_1%3a1.0.9-1+b1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1+b1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../029-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../031-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../033-libx11-6_2%3a1.8.7-1+b1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../035-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../036-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../037-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../038-libxss1_1%3a1.2.3-1+b1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../039-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../040-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. Preparing to unpack .../041-blt_2.5.3+dfsg-7_amd64.deb ... Unpacking blt (2.5.3+dfsg-7) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../042-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../043-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../044-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../045-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../046-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../047-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../048-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. 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Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 6 12:54:28 UTC 2025. Universal Time is now: Fri Jun 6 12:54:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-tk:amd64 (3.12.3-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-contourpy (1.0.7-3) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Processing triggers for libc-bin (2.37-19) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources ../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_closest /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:887: FutureWarning: Mismatched null-like values nan and found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 484 warnings in 4.07s ================== I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources ../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_io.py:23: DeprecationWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_io.py:24: DeprecationWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_io.py:25: DeprecationWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_io.py:33: DeprecationWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.11_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.11_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.11_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.11_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py::test_closest /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py:887: FutureWarning: Mismatched null-like values nan and found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 483 warnings in 4.16s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12 creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/ops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/extras.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/vis.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/ops.py to ops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/vis.py to vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/fileops.py to fileops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/schemas.py to schemas.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/resources.py to resources.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/extras.py to extras.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/construction.py to construction.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/specs.py to specs.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/arrops.py to arrops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/stringops.py to stringops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/checks.py to checks.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11 creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__pycache__/_version.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__pycache__/ops.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__pycache__/extras.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__pycache__/vis.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-311.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.11_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/ops.py to ops.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/vis.py to vis.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/fileops.py to fileops.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/schemas.py to schemas.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/io/resources.py to resources.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/extras.py to extras.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/construction.py to construction.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/specs.py to specs.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/arrops.py to arrops.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/stringops.py to stringops.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/checks.py to checks.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/_version.py to _version.cpython-311.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.11/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3519439 and its subdirectories I: Current time: Fri Jun 6 00:55:47 -12 2025 I: pbuilder-time-stamp: 1749214547 Sat May 4 06:32:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat May 4 06:32:49 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat May 4 06:36:57 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat May 4 06:36:58 UTC 2024 I: python-bioframe_0.4.1-1_amd64.changes: Format: 1.8 Date: Mon, 12 Jun 2023 23:21:10 +0530 Source: python-bioframe Binary: python3-bioframe Architecture: all Version: 0.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-bioframe - library to enable flexible, scalable operations on genomic interv Changes: python-bioframe (0.4.1-1) unstable; urgency=medium . * New upstream version 0.4.1 + Refresh patches Checksums-Sha1: d31d1f339791ae2a7d03194c7537ceaa37158e70 8361 python-bioframe_0.4.1-1_amd64.buildinfo c0535bbaa81fff8831608d88dcda7904558a9937 71576 python3-bioframe_0.4.1-1_all.deb Checksums-Sha256: 0325614e47ae05ef418e45ac3f8c76b85e72bce5dbfecf52be1e76b8bda8e50d 8361 python-bioframe_0.4.1-1_amd64.buildinfo 7e37de7dd5720af67f394f35d8060a5b93b3cb58fd64cc12974dc46c69c34f3d 71576 python3-bioframe_0.4.1-1_all.deb Files: 074424f30df4603dc8069208c6b61327 8361 science optional python-bioframe_0.4.1-1_amd64.buildinfo d279325d17464cc5e43108ed0eb9b41e 71576 science optional python3-bioframe_0.4.1-1_all.deb Sat May 4 06:36:59 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_16-18941.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/python-bioframe_0.4.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/python-bioframe_0.4.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/python-bioframe_0.4.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/b1/python-bioframe_0.4.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vBoPIpuS/b2/python-bioframe_0.4.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.366s) 0.366s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 757ms CPU time consumed: 754ms Sat May 4 06:37:00 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 4 06:37:00 UTC 2024 I: python-bioframe from trixie built successfully and reproducibly on amd64. Sat May 4 06:37:01 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 4 06:37:01 UTC 2024 I: Submitting 12K b1/python-bioframe_0.4.1-1_amd64.buildinfo.asc Sat May 4 06:37:02 UTC 2024 I: Submitting 12K b2/python-bioframe_0.4.1-1_amd64.buildinfo.asc Sat May 4 06:37:03 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 4 06:37:03 UTC 2024 I: Done submitting .buildinfo files. Sat May 4 06:37:03 UTC 2024 I: Removing signed python-bioframe_0.4.1-1_amd64.buildinfo.asc files: removed './b1/python-bioframe_0.4.1-1_amd64.buildinfo.asc' removed './b2/python-bioframe_0.4.1-1_amd64.buildinfo.asc'