Wed Nov 13 05:10:31 UTC 2024 I: starting to build pymatgen/trixie/amd64 on jenkins on '2024-11-13 05:10' Wed Nov 13 05:10:31 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/33508/console.log Wed Nov 13 05:10:31 UTC 2024 I: Downloading source for trixie/pymatgen=2024.10.29+dfsg1-3 --2024-11-13 05:10:31-- http://deb.debian.org/debian/pool/main/p/pymatgen/pymatgen_2024.10.29%2bdfsg1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3223 (3.1K) [text/prs.lines.tag] Saving to: ‘pymatgen_2024.10.29+dfsg1-3.dsc’ 0K ... 100% 402M=0s 2024-11-13 05:10:31 (402 MB/s) - ‘pymatgen_2024.10.29+dfsg1-3.dsc’ saved [3223/3223] Wed Nov 13 05:10:31 UTC 2024 I: pymatgen_2024.10.29+dfsg1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pymatgen Binary: python3-pymatgen, python-pymatgen-doc Architecture: any all Version: 2024.10.29+dfsg1-3 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://pymatgen.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/debichem-team/pymatgen Vcs-Git: https://salsa.debian.org/debichem-team/pymatgen.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, packmol, python3-emmet-core Build-Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2024.10.29~) , dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2024.7.29~), python3-networkx (>= 3~), python3-numpy (>= 1.25.0~), python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 4.5.0~), python3-pybtex (>= 0.24.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-vtk9 | python3-paraview, python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.23~), python3-openbabel (>= 3.1.1~), packmol [!armel !riscv64] , python3-emmet-core Build-Depends-Indep: dh-sequence-sphinxdoc , libjs-jquery , libjs-mathjax , python3-sphinx-rtd-theme Package-List: python-pymatgen-doc deb doc optional arch=all python3-pymatgen deb python optional arch=any Checksums-Sha1: 5150b54d1e064db5ded717ad96065f53f277adc0 9756668 pymatgen_2024.10.29+dfsg1.orig.tar.xz b69e531b4c9397e5be16984b8d718ec5de522561 16380 pymatgen_2024.10.29+dfsg1-3.debian.tar.xz Checksums-Sha256: 1fcce326a821751b560fde5d3287f9beced7c7681945ae4ab33151f29614a185 9756668 pymatgen_2024.10.29+dfsg1.orig.tar.xz f7161aa44de6e32bad95456968507e0e760a546f22e7a3e5a2bad29dcb224b83 16380 pymatgen_2024.10.29+dfsg1-3.debian.tar.xz Files: a2a3ac43c3e068f1b9578e6aeb0ad2f2 9756668 pymatgen_2024.10.29+dfsg1.orig.tar.xz c1ae50d9fb9b9d4583335c2a7ac2b840 16380 pymatgen_2024.10.29+dfsg1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmcwhosACgkQVz7x5L1a Afroag/+IOUOLCdSqHa5Y0bEohOwwqN3a1DCoFU9XLBvIeeKbd4D5hcVjTsl0AX0 niuzKWk2kTO5yL4XCJoayr07a8uRql3YhZBb6IhJI42phmOPRrB2JMnK9CK4vTMd nvWYwUR5iBIZhtnVy6JTCzrfcABDfMty7HkLktjkJJK+pNrTs9+dchgioKrGExh+ lw2sBhLxtCjbe6ZNzvSizlNEQNMguIgU+B5aAVD1yhKx9wnavnV3+cesYh270QgG NgloNmFNw4PlqdXewQKrSzK2k6Non8lTOZbxXfWzYSkg73bYKfaw/4jJc34aXZWB U/j9woUyQv+AUnhlNRZaHKTdoLXQATyQPO8/23NPxR0HVz6HokJLZl5winmYNDqO 0OLJ+bvaGvXrtmGvl11Qs3QgOImXaNsyngcwX9CnwcGI1IoCJATtmD/Fx8rVRoSz PDUiJZ1KsHC7YaTwR5Dh2uVjDbX0QPRAAdCmwEuKEku/ENo+iIJ2aQVe7BezcHTQ AUe4k+KzprzX20cR8NOsihDLFLRidnIrorNY+38NGjmcKmGWEGb7lNQyfzexxY29 jBnbIUFjjfbZbnfOO536gU4BhOQqKmUtAVVe2LB/u+7YyKEAKNwmCgen+ALnNJxQ mMN/Bf2h0Mr374hoNJTcZgxK67UPPiqDC2lWzkfDmXA/ysE6cxM= =MeoD -----END PGP SIGNATURE----- Wed Nov 13 05:10:32 UTC 2024 I: Checking whether the package is not for us Wed Nov 13 05:10:32 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Wed Nov 13 05:10:32 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Wed Nov 13 05:44:49 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 15 23:33:34 -12 2025 I: pbuilder-time-stamp: 1765884814 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymatgen_2024.10.29+dfsg1-3.dsc] I: copying [./pymatgen_2024.10.29+dfsg1.orig.tar.xz] I: copying [./pymatgen_2024.10.29+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 10 10:10:19 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pymatgen_2024.10.29+dfsg1-3.dsc: no acceptable signature found dpkg-source: info: extracting pymatgen in pymatgen-2024.10.29+dfsg1 dpkg-source: info: unpacking pymatgen_2024.10.29+dfsg1.orig.tar.xz dpkg-source: info: unpacking pymatgen_2024.10.29+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_lammps_regex_path.patch dpkg-source: info: applying skip_nonfree_testfile.patch dpkg-source: info: applying CVE-2022-42964_ReDOS_vulnerability.patch dpkg-source: info: applying skip_test_zsl_numba.patch dpkg-source: info: applying no_sphinx_markdown_builder.patch dpkg-source: info: applying tests_init.patch dpkg-source: info: applying tests_pass_or_skip.patch dpkg-source: info: applying docs_index.patch dpkg-source: info: applying docs_libjs_local.patch dpkg-source: info: applying test_files_writing.patch dpkg-source: info: applying test_tolerance.patch dpkg-source: info: applying neighbor_set_int64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/909998/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='40a2e85be93a4e6f8c658f4a5041e51a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='909998' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/pbuilderrc_ZcZx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/b1 --logfile b1/build.log pymatgen_2024.10.29+dfsg1-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/909998/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pymatgen-test-files (>= 2024.10.29~), dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-frozendict, python3-matplotlib (>= 3.8~), python3-monty (>= 2024.7.29~), python3-networkx (>= 3~), python3-numpy (>= 1.25.0~), python3-palettable (>= 3.3.3~), python3-pandas (>= 2~), python3-plotly (>= 4.5.0~), python3-pybtex (>= 0.24.0~), python3-requests (>= 2.32~), python3-ruamel.yaml (>= 0.17.0~), python3-scipy (>= 1.13.0~), python3-spglib (>= 2.5.0~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.9~), python3-tqdm (>= 4.60~), python3-uncertainties (>= 3.1.4~), python3-joblib (>= 1~), python3-ase (>= 3.23.0~), python3-bs4 (>= 4.9.1~), python3-vtk9 | python3-paraview, python3-h5py (>= 3.11.0~), python3-netcdf4 (>= 1.6.5~), python3-phonopy (>= 2.23~), python3-openbabel (>= 3.1.1~), packmol, python3-emmet-core, dh-sequence-sphinxdoc, libjs-jquery, libjs-mathjax, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pymatgen-test-files (>= 2024.10.29~); however: Package pymatgen-test-files is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-frozendict; however: Package python3-frozendict is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 3.8~); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 2024.7.29~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 3~); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.25.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-palettable (>= 3.3.3~); however: Package python3-palettable is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 2~); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-plotly (>= 4.5.0~); however: Package python3-plotly is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex (>= 0.24.0~); however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-requests (>= 2.32~); however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml (>= 0.17.0~); however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.13.0~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.5.0~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy (>= 1.6.2~); however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate (>= 0.9~); however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm (>= 4.60~); however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.4~); however: Package python3-uncertainties is not installed. pbuilder-satisfydepends-dummy depends on python3-joblib (>= 1~); however: Package python3-joblib is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.23.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4 (>= 4.9.1~); however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-vtk9 | python3-paraview; however: Package python3-vtk9 is not installed. Package python3-paraview is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 3.11.0~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-netcdf4 (>= 1.6.5~); however: Package python3-netcdf4 is not installed. pbuilder-satisfydepends-dummy depends on python3-phonopy (>= 2.23~); however: Package python3-phonopy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel (>= 3.1.1~); however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on packmol; however: Package packmol is not installed. pbuilder-satisfydepends-dummy depends on python3-emmet-core; however: Package python3-emmet-core is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libaec0{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcbor0.10{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libglew2.2{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libice6{a} libicu72{a} libimagequant0{a} libinchi1.07{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm17t64{a} libllvm19{a} liblzf1{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libmunge2{a} libnetcdf19t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnl-3-200{a} libnl-route-3-200{a} libnsl2{a} libnuma1{a} libogg0{a} libopenbabel7{a} libopengl0{a} libopenjp2-7{a} libopenmpi3t64{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libproj25{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5widgets5t64{a} libraqm0{a} librdmacm1t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsymspg2{a} libsz2{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libtheora0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libvtk9.3{a} libvtk9.3-qt{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} packmol{a} po-debconf{a} procps{a} proj-data{a} pybuild-plugin-pyproject{a} pymatgen-test-files{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-annotated-types{a} python3-appdirs{a} python3-ase{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-bs4{a} python3-bson{a} python3-build{a} python3-certifi{a} python3-cftime{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-dnspython{a} python3-docutils{a} python3-dotenv{a} python3-email-validator{a} python3-emmet-core{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozendict{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-monty{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-nbformat{a} python3-netcdf4{a} python3-networkx{a} python3-numpy{a} python3-openbabel{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-phonopy{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-pybtex{a} python3-pydantic{a} python3-pydantic-core{a} python3-pydantic-settings{a} python3-pygments{a} python3-pymatgen{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-spglib{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-vtk9{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python-monty-doc python3-bottleneck python3-bson-ext python3-cryptography python3-cssselect python3-gdal python3-h2 python3-html5lib python3-httpcore python3-httpx python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-psutil python3-pydot python3-pygraphviz python3-rfc3987 python3-simplejson python3-tables python3-tomli python3-uritemplate python3-webcolors qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 tcl wget xauth xdg-user-dirs 0 packages upgraded, 385 newly installed, 0 to remove and 0 not upgraded. Need to get 533 MB of archives. After unpacking 2119 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 69 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 111 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-3 [510 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.14.10-6 [203 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libdouble-conversion3 amd64 3.3.0-1+b2 [41.8 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.2.6-1 [38.0 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.3-1 [26.0 MB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get: 153 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.2.6-1 [9185 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.2.6-1 [42.8 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libegl-mesa0 amd64 24.2.6-1 [133 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.3-2 [157 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b2 [20.3 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.2.6-1 [43.9 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.2.6-1 [154 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libglew2.2 amd64 2.2.0-4+b2 [168 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libgudev-1.0-0 amd64 238-5+b1 [14.8 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 183 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libinchi1.07 amd64 1.07.1+dfsg-4 [556 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libwacom-common all 2.13.0-1 [98.0 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libwacom9 amd64 2.13.0-1 [24.0 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libinput-bin amd64 1.26.2-1 [25.3 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libmtdev1t64 amd64 1.1.6-1.2+b1 [22.5 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libinput10 amd64 1.26.2-1 [131 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b2 [10.1 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libmaeparser1 amd64 1.3.1-1+b2 [94.0 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libnetcdf19t64 amd64 1:4.9.2-7 [477 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libogg0 amd64 1.3.5-3+b2 [23.8 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 libopenbabel7 amd64 3.1.1+dfsg-11+b1 [3251 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.3-2+b1 [662 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.42-4+b2 [249 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 proj-data all 9.5.0-1 [6293 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libproj25 amd64 9.5.0-1 [1420 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 234 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 235 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-2 [1866 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-2 [217 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-2 [682 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libxcb-util1 amd64 0.4.0-1+b2 [22.5 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b3 [15.7 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libxcb-render-util0 amd64 0.3.9-1+b2 [17.4 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.6.0-1+b2 [111 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b2 [16.3 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-2 [3498 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-2 [2400 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libsymspg2 amd64 2.5.0-1 [196 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 libtbbmalloc2 amd64 2021.12.0-1 [48.9 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libtbbbind-2-5 amd64 2021.12.0-1 [14.4 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libtbb12 amd64 2021.12.0-1 [87.8 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libtheora0 amd64 1.1.1+dfsg.1-17 [155 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libvtk9.3 amd64 9.3.0+dfsg1-1+b2 [22.9 MB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1+b2 [171 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 272 http://deb.debian.org/debian trixie/main amd64 packmol amd64 1:20.14.3-1 [115 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 pymatgen-test-files all 2024.10.29-1 [209 MB] Get: 281 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 285 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 288 http://deb.debian.org/debian trixie/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 293 http://deb.debian.org/debian trixie/main amd64 python3-spglib amd64 2.5.0-1 [52.2 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 python3.12-tk amd64 3.12.7-3 [112 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.0-1 [103 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.6-1 [9428 B] Get: 299 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.4.0-1 [79.4 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.0-2 [215 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 303 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b5 [318 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.0-1 [1251 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b4 [25.2 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.54.1-4 [1429 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-2 [60.9 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.8.3-3 [5560 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 python3-ase all 3.23.0-1 [1698 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 python3-bs4 all 4.12.3-3 [133 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 python3-bson all 4.10.1-2 [87.0 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 323 http://deb.debian.org/debian trixie/main amd64 python3-cftime amd64 1.6.4-1+b1 [205 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 python3-dotenv all 1.0.1-1 [26.6 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [4389 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 python3-pydantic-core amd64 2.23.4-2+b1 [1453 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 python3-pydantic amd64 2.9.2-2 [343 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 python3-tqdm all 4.66.5-1 [90.1 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 python3-monty all 2024.7.29-1 [43.1 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 python3-latexcodec all 3.0.0-1 [17.5 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 python3-pybtex all 0.24.0-4 [74.6 kB] Get: 342 http://deb.debian.org/debian trixie/main amd64 python3-pydantic-settings all 2.6.1-1 [40.8 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 python3-joblib all 1.3.2-5 [216 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 345 http://deb.debian.org/debian trixie/main amd64 python3-palettable all 3.3.3-1 [69.7 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.20.1-1 [252 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get: 351 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 352 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 353 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 354 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 355 http://deb.debian.org/debian trixie/main amd64 python3-jupyter-core all 5.7.2-4 [35.1 kB] Get: 356 http://deb.debian.org/debian trixie/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 357 http://deb.debian.org/debian trixie/main amd64 python3-tenacity all 8.4.2+really8.4.1-1 [46.0 kB] Get: 358 http://deb.debian.org/debian trixie/main amd64 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 359 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [130 kB] Get: 360 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 361 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 362 http://deb.debian.org/debian trixie/main amd64 python3-uncertainties all 3.2.2-1 [54.7 kB] Get: 363 http://deb.debian.org/debian trixie/main amd64 python3-pymatgen amd64 2024.10.29+dfsg1-3 [2528 kB] Get: 364 http://deb.debian.org/debian trixie/main amd64 python3-openbabel amd64 3.1.1+dfsg-11+b1 [570 kB] Get: 365 http://deb.debian.org/debian trixie/main amd64 python3-emmet-core all 0.76.2-1 [122 kB] Get: 366 http://deb.debian.org/debian trixie/main amd64 python3-frozendict all 1.2-3 [4888 B] Get: 367 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get: 368 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 369 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 370 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 371 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 372 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 373 http://deb.debian.org/debian trixie/main amd64 python3-mpi4py amd64 4.0.0-8 [743 kB] Get: 374 http://deb.debian.org/debian trixie/main amd64 python3-netcdf4 amd64 1.7.2-1 [609 kB] Get: 375 http://deb.debian.org/debian trixie/main amd64 python3-phonopy amd64 2.23.1-1+b2 [272 kB] Get: 376 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 377 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 378 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 379 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 380 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 381 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 382 http://deb.debian.org/debian trixie/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1022 kB] Get: 383 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 384 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Get: 385 http://deb.debian.org/debian trixie/main amd64 python3-vtk9 amd64 9.3.0+dfsg1-1+b2 [7238 kB] Fetched 533 MB in 10s (54.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.3-2) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20316 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21378 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 16 11:38:51 UTC 2025. Universal Time is now: Tue Dec 16 11:38:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libsymspg2:amd64 (2.5.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb-xinerama0:amd64 (1.17.0-2+b1) ... Setting up libmunge2:amd64 (0.5.15-4+b1) ... Setting up libexpat1-dev:amd64 (2.6.3-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... 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Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libwacom9:amd64 (2.13.0-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libinput-bin (1.26.2-1) ... Setting up libtbbbind-2-5:amd64 (2021.12.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up packmol (1:20.14.3-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b2) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up libxkbcommon-x11-0:amd64 (1.6.0-1+b2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... 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Setting up python3.12 (3.12.7-3) ... Setting up libgl1-mesa-dri:amd64 (24.2.6-1) ... Setting up libqt5network5t64:amd64 (5.15.15+dfsg-2) ... Setting up libopenbabel7 (3.1.1+dfsg-11+b1) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libegl-mesa0:amd64 (24.2.6-1) ... Setting up libhsa-runtime64-1:amd64 (5.7.1-3) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up libglx-mesa0:amd64 (24.2.6-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-bson (4.10.1-2) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b5) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libglew2.2:amd64 (2.2.0-4+b2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.20.1-1) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-soupsieve (2.6-1) ... Setting up python3-jupyter-core (5.7.2-4) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-dotenv (1.0.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-pydantic-core (2.23.4-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-openbabel (3.1.1+dfsg-11+b1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-tenacity (8.4.2+really8.4.1-1) ... Setting up python3-tqdm (4.66.5-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... Setting up python3-frozendict (1.2-3) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-latexcodec (3.0.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-tk:amd64 (3.12.6-1) ... Setting up python3-bs4 (4.12.3-3) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... Setting up libpython3-all-dev:amd64 (3.12.6-1) ... Setting up python3-pydantic (2.9.2-2) ... Setting up python3-dev (3.12.6-1) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pydantic-settings (2.6.1-1) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-joblib (1.3.2-5) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-2) ... Setting up mpi-default-bin (1.17) ... Setting up python3-mpi4py (4.0.0-8) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-palettable (3.3.3-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1+b2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-pybtex (0.24.0-4) ... Setting up python3-contourpy (1.3.0-2) ... Setting up python3-spglib (2.5.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-uncertainties (3.2.2-1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1+b2) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-cftime (1.6.4-1+b1) ... Setting up python3-monty (2024.7.29-1) ... Setting up python3-netcdf4 (1.7.2-1) ... Setting up python3-vtk9 (9.3.0+dfsg1-1+b2) ... /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' patn = re.compile (" \S") Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3) ... Setting up python3-ase (3.23.0-1) ... Setting up python3-phonopy (2.23.1-1+b2) ... Setting up python3-pymatgen (2024.10.29+dfsg1-3) ... Setting up python3-emmet-core (0.76.2-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pymatgen-2024.10.29+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymatgen_2024.10.29+dfsg1-3_source.changes dpkg-buildpackage: info: source package pymatgen dpkg-buildpackage: info: source version 2024.10.29+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pymatgen-2024.10.29+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' rm -f pymatgen/optimization/linear_assignment.c pymatgen/optimization/neighbors.c pymatgen/util/coord_cython.c rm -rf pd.json .hypothesis tmp_dir make[1]: Leaving directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/pymatgen copying src/pymatgen/dao.py -> build/lib.linux-x86_64-cpython-312/pymatgen creating build/lib.linux-x86_64-cpython-312/pymatgen/ext copying src/pymatgen/ext/cod.py -> build/lib.linux-x86_64-cpython-312/pymatgen/ext copying src/pymatgen/ext/matproj_legacy.py -> build/lib.linux-x86_64-cpython-312/pymatgen/ext copying src/pymatgen/ext/matproj.py -> build/lib.linux-x86_64-cpython-312/pymatgen/ext copying src/pymatgen/ext/optimade.py -> build/lib.linux-x86_64-cpython-312/pymatgen/ext creating build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/chargemol_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/vampire_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/bader_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/enumlib_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/mcsqs_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/gulp_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/critic2_caller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line creating build/lib.linux-x86_64-cpython-312/pymatgen/alchemy copying src/pymatgen/alchemy/filters.py -> build/lib.linux-x86_64-cpython-312/pymatgen/alchemy copying src/pymatgen/alchemy/materials.py -> build/lib.linux-x86_64-cpython-312/pymatgen/alchemy copying src/pymatgen/alchemy/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/alchemy copying src/pymatgen/alchemy/transmuters.py -> build/lib.linux-x86_64-cpython-312/pymatgen/alchemy creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/piezo_sensitivity.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/quasirrho.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/bond_valence.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/xps.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/energy_models.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/structure_analyzer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/quasiharmonic.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/reaction_calculator.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/local_env.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/disorder.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/ewald.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/phase_diagram.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/hhi.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/dimensionality.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/surface_analysis.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/graphs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/interface_reactions.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/transition_state.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/prototypes.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/chempot_diagram.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/cost.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/excitation.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/fragmenter.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/piezo.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/wulff.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/nmr.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/molecule_matcher.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/structure_matcher.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/thermochemistry.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/functional_groups.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/molecule_structure_comparator.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/adsorption.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/eos.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/bond_dissociation.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/pourbaix_diagram.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis creating build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/gruneisen.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/bandstructure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/dos.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/thermal_displacements.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/plotter.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon copying src/pymatgen/phonon/ir_spectra.py -> build/lib.linux-x86_64-cpython-312/pymatgen/phonon creating build/lib.linux-x86_64-cpython-312/pymatgen/vis copying src/pymatgen/vis/structure_chemview.py -> build/lib.linux-x86_64-cpython-312/pymatgen/vis copying src/pymatgen/vis/plotters.py -> build/lib.linux-x86_64-cpython-312/pymatgen/vis copying src/pymatgen/vis/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/vis copying src/pymatgen/vis/structure_vtk.py -> build/lib.linux-x86_64-cpython-312/pymatgen/vis creating build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/phonopy.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/template.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/multiwfn.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/shengbte.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/common.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/cif.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/xr.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/gaussian.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/ase.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/jarvis.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/xyz.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/core.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/openff.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/pwscf.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/res.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/cssr.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/lmto.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/adf.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/prismatic.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/zeopp.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/packmol.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/fiesta.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/atat.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/babel.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/wannier90.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/optimade.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/xcrysden.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/icet.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io copying src/pymatgen/io/nwchem.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io creating build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/entry_tools.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/correction_calculator.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/computed_entries.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/mixing_scheme.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/compatibility.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/exp_entries.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/entries creating build/lib.linux-x86_64-cpython-312/pymatgen/optimization copying src/pymatgen/optimization/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/optimization creating build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg_potcar.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg_analyze.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg_config.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/feff_plot_cross_section.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg_plot.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/pmg_structure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/get_environment.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli copying src/pymatgen/cli/feff_plot_dos.py -> build/lib.linux-x86_64-cpython-312/pymatgen/cli creating build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/maggroups.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/bandstructure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/groups.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/settings.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/kpath.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/analyzer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/structure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/site_symmetries.py -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry creating build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/misc.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/io_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/plotting.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/num.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/provenance.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/joblib.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/due.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/typing.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/numba.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/coord.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/graph_hashing.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/string.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util creating build/lib.linux-x86_64-cpython-312/pymatgen/transformations copying src/pymatgen/transformations/advanced_transformations.py -> build/lib.linux-x86_64-cpython-312/pymatgen/transformations copying src/pymatgen/transformations/standard_transformations.py -> build/lib.linux-x86_64-cpython-312/pymatgen/transformations copying src/pymatgen/transformations/site_transformations.py -> build/lib.linux-x86_64-cpython-312/pymatgen/transformations copying src/pymatgen/transformations/transformation_abc.py -> build/lib.linux-x86_64-cpython-312/pymatgen/transformations copying src/pymatgen/transformations/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/transformations creating build/lib.linux-x86_64-cpython-312/pymatgen/apps copying src/pymatgen/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps creating build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/composition.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/xcfunc.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/periodic_table.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/operations.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/bonds.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/interface.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/sites.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/libxcfunc.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/ion.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/surface.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/structure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/spectrum.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/units.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/molecular_orbitals.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/lattice.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/trajectory.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/tensors.py -> build/lib.linux-x86_64-cpython-312/pymatgen/core creating build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/bandstructure.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/cohp.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/dos.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/core.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/plotter.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure copying src/pymatgen/electronic_structure/boltztrap2.py -> build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/spillage.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/topological copying src/pymatgen/analysis/topological/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/topological creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/jahnteller.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/analyzer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism copying src/pymatgen/analysis/magnetism/heisenberg.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/grain.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/gb copying src/pymatgen/analysis/gb/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/gb creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar copying src/pymatgen/analysis/solar/slme.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/xrd.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/core.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/tem.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/zsl.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces copying src/pymatgen/analysis/interfaces/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction copying src/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xas copying src/pymatgen/analysis/xas/spectrum.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xas creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/elastic.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/strain.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity copying src/pymatgen/analysis/elasticity/stress.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv copying src/pymatgen/analysis/chemenv/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ferroelectricity copying src/pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ferroelectricity creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments copying src/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity copying src/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils copying src/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem copying src/pymatgen/io/qchem/utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem copying src/pymatgen/io/qchem/sets.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem copying src/pymatgen/io/qchem/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem copying src/pymatgen/io/qchem/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem copying src/pymatgen/io/qchem/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem creating build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb copying src/pymatgen/io/xtb/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb copying src/pymatgen/io/xtb/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb copying src/pymatgen/io/xtb/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb creating build/lib.linux-x86_64-cpython-312/pymatgen/io/exciting copying src/pymatgen/io/exciting/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/exciting copying src/pymatgen/io/exciting/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/exciting creating build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/data.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/sets.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/generators.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps copying src/pymatgen/io/lammps/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster copying src/pymatgen/io/lobster/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster copying src/pymatgen/io/lobster/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster copying src/pymatgen/io/lobster/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster copying src/pymatgen/io/lobster/lobsterenv.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster creating build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/netcdf.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/abiobjects.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/pseudos.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/abitimer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit copying src/pymatgen/io/abinit/variable.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit creating build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat copying src/pymatgen/io/pwmat/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat creating build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/utils.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/sets.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k copying src/pymatgen/io/cp2k/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k creating build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/sets.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/help.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/optics.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp creating build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/sets.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-312/pymatgen/io/aims copying src/pymatgen/io/aims/inputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims copying src/pymatgen/io/aims/outputs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims copying src/pymatgen/io/aims/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims copying src/pymatgen/io/aims/parsers.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims creating build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/base.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/bs.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/magnetism.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/core.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets copying src/pymatgen/io/aims/sets/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets creating build/lib.linux-x86_64-cpython-312/pymatgen/util/testing copying src/pymatgen/util/testing/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/util/testing creating build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/conversion_battery.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/analyzer.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/plotter.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/insertion_battery.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery copying src/pymatgen/apps/battery/battery_abc.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery creating build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg copying src/pymatgen/apps/borg/queen.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg copying src/pymatgen/apps/borg/hive.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg copying src/pymatgen/apps/borg/__init__.py -> build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg copying src/pymatgen/py.typed -> build/lib.linux-x86_64-cpython-312/pymatgen copying src/pymatgen/command_line/lewis.lib -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/bush.lib -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/command_line/OxideTersoffPotentials -> build/lib.linux-x86_64-cpython-312/pymatgen/command_line copying src/pymatgen/analysis/costdb_elements.csv -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/hhi_data.csv -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/ionic_radii.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/aflow_prototypes.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/op_params.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/bvparam_1991.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/icsd_bv.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/analysis/cn_opt_params.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis copying src/pymatgen/vis/ElementColorSchemes.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/vis copying src/pymatgen/entries/exp_compounds.json.gz -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/calc_compounds.json.gz -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/MP2020Compatibility.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/MITCompatibility.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/entries copying src/pymatgen/entries/MPCompatibility.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/entries creating build/lib.linux-x86_64-cpython-312/pymatgen/entries/data copying src/pymatgen/entries/data/g_els.json -> build/lib.linux-x86_64-cpython-312/pymatgen/entries/data copying src/pymatgen/entries/data/nist_gas_gf.json -> build/lib.linux-x86_64-cpython-312/pymatgen/entries/data copying src/pymatgen/symmetry/symm_data.json -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.json -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/symm_ops.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/symmetry/symm_data.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/symmetry copying src/pymatgen/util/plotly_chempot_layouts.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util copying src/pymatgen/util/plotly_pd_layouts.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util creating build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Li10GeP2S12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Si.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/La2CoO4F.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/VO2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/LiFePO4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/K2O2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/TiO2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/BaNiO3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Graphite.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/SiO2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Li2O.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/TlBiSe2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/NaFePO4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/CsCl.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/SrTiO3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Pb2TiZrO6.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/He_BCC.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/util/structures/Sn.json -> build/lib.linux-x86_64-cpython-312/pymatgen/util/structures copying src/pymatgen/core/bond_lengths.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/reconstructions_archive.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/func_groups.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/quad_data.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/periodic_table.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/core/libxc_docs.json -> build/lib.linux-x86_64-cpython-312/pymatgen/core copying src/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism copying src/pymatgen/analysis/solar/am1.5G.dat -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar copying src/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction copying src/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/data copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying src/pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/msd.template -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/md.template -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/thermalization.template -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates copying src/pymatgen/io/lammps/templates/minimization.template -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates creating build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis copying src/pymatgen/io/vasp/incar_parameters.json -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE64Base.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/PBE54Base.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp copying src/pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/MPELNESSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff copying src/pymatgen/io/feff/MPXANESSet.yaml -> build/lib.linux-x86_64-cpython-312/pymatgen/io/feff running build_ext Compiling src/pymatgen/optimization/linear_assignment.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/linear_assignment.pyx building 'pymatgen.optimization.linear_assignment' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/src creating build/temp.linux-x86_64-cpython-312/src/pymatgen creating build/temp.linux-x86_64-cpython-312/src/pymatgen/optimization x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/pymatgen/optimization/linear_assignment.c -o build/temp.linux-x86_64-cpython-312/src/pymatgen/optimization/linear_assignment.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/linear_assignment.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In function '__pyx_f_8pymatgen_12optimization_17linear_assignment_compute', inlined from '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra' at src/pymatgen/optimization/linear_assignment.c:19963:16: src/pymatgen/optimization/linear_assignment.c:20839:19: warning: '__pyx_v_j2' may be used uninitialized [-Wmaybe-uninitialized] 20839 | __pyx_t_5 = __pyx_v_j1; | ~~~~~~~~~~^~~~~~~~~~~~ src/pymatgen/optimization/linear_assignment.c: In function '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra': src/pymatgen/optimization/linear_assignment.c:20055:7: note: '__pyx_v_j2' was declared here 20055 | int __pyx_v_j2; | ^~~~~~~~~~ In function '__pyx_f_8pymatgen_12optimization_17linear_assignment_compute', inlined from '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra' at src/pymatgen/optimization/linear_assignment.c:19963:16: src/pymatgen/optimization/linear_assignment.c:21552:42: warning: '__pyx_v_last' may be used uninitialized [-Wmaybe-uninitialized] 21552 | __pyx_t_13 = (__pyx_v_last + 1); | ~~~~~~~~~~~~~~^~~~ src/pymatgen/optimization/linear_assignment.c: In function '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra': src/pymatgen/optimization/linear_assignment.c:20041:7: note: '__pyx_v_last' was declared here 20041 | int __pyx_v_last; | ^~~~~~~~~~~~ In function '__pyx_f_8pymatgen_12optimization_17linear_assignment_compute', inlined from '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra' at src/pymatgen/optimization/linear_assignment.c:19963:16: src/pymatgen/optimization/linear_assignment.c:21462:18: warning: '__pyx_v_m' may be used uninitialized [-Wmaybe-uninitialized] 21462 | __pyx_v_u1 = (((*((__pyx_t_5numpy_float_t *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_c.data + __pyx_t_4 * __pyx_v_c.strides[0]) ) + __pyx_t_5 * __pyx_v_c.strides[1]) ))) - (__pyx_v_v[__pyx_v_j1])) - __pyx_v_m); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/linear_assignment.c: In function '__pyx_pf_8pymatgen_12optimization_17linear_assignment_16LinearAssignment___init__.isra': src/pymatgen/optimization/linear_assignment.c:20051:26: note: '__pyx_v_m' was declared here 20051 | __pyx_t_5numpy_float_t __pyx_v_m; | ^~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/pymatgen/optimization/linear_assignment.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/pymatgen/optimization/linear_assignment.cpython-312-x86_64-linux-gnu.so performance hint: src/pymatgen/util/coord_cython.pyx:36:5: Exception check on 'dot_2d' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d' to allow an error code to be returned. performance hint: src/pymatgen/util/coord_cython.pyx:51:5: Exception check on 'dot_2d_mod' will always require the GIL to be acquired. Possible solutions: 1. Declare 'dot_2d_mod' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'dot_2d_mod' to allow an error code to be returned. warning: src/pymatgen/util/coord_cython.pyx:219:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: src/pymatgen/util/coord_cython.pyx:268:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling src/pymatgen/util/coord_cython.pyx because it changed. [1/1] Cythonizing src/pymatgen/util/coord_cython.pyx building 'pymatgen.util.coord_cython' extension creating build/temp.linux-x86_64-cpython-312/src/pymatgen/util x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/pymatgen/util/coord_cython.c -o build/temp.linux-x86_64-cpython-312/src/pymatgen/util/coord_cython.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from src/pymatgen/util/coord_cython.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ src/pymatgen/util/coord_cython.c: In function '__pyx_pf_8pymatgen_4util_12coord_cython_pbc_shortest_vectors.isra': src/pymatgen/util/coord_cython.c:22271:24: warning: '__pyx_v_bestk' may be used uninitialized [-Wmaybe-uninitialized] 22271 | __pyx_t_29 = __pyx_v_bestk; | ~~~~~~~~~~~^~~~~~~~~~~~~~~ src/pymatgen/util/coord_cython.c:21017:7: note: '__pyx_v_bestk' was declared here 21017 | int __pyx_v_bestk; | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/pymatgen/util/coord_cython.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/pymatgen/util/coord_cython.cpython-312-x86_64-linux-gnu.so performance hint: src/pymatgen/optimization/neighbors.pyx:525:5: Exception check on 'get_bounds' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_bounds' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_bounds' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:552:5: Exception check on 'get_frac_coords' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_frac_coords' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_frac_coords' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:564:5: Exception check on 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:582:5: Exception check on 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:610:5: Exception check on 'get_max_rep' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_rep' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_rep' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:626:5: Exception check on 'get_reciprocal_lattice' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_reciprocal_lattice' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_reciprocal_lattice' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:641:5: Exception check on 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:675:5: Exception check on 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:702:5: Exception check on 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:726:5: Exception check on 'compute_cube_index' will always require the GIL to be acquired. Possible solutions: 1. Declare 'compute_cube_index' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'compute_cube_index' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:743:5: Exception check on 'three_to_one' will always require the GIL to be acquired. Possible solutions: 1. Declare 'three_to_one' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'three_to_one' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:778:5: Exception check on 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:496:27: Exception check after calling 'offset_cube' will always require the GIL to be acquired. Possible solutions: 1. Declare 'offset_cube' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'offset_cube' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:541:19: Exception check after calling 'get_max_and_min' will always require the GIL to be acquired. Possible solutions: 1. Declare 'get_max_and_min' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'get_max_and_min' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:561:14: Exception check after calling 'matrix_inv' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matrix_inv' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matrix_inv' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:562:10: Exception check after calling 'matmul' will always require the GIL to be acquired. Possible solutions: 1. Declare 'matmul' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'matmul' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:635:23: Exception check after calling 'recip_component' will always require the GIL to be acquired. Possible solutions: 1. Declare 'recip_component' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'recip_component' to allow an error code to be returned. performance hint: src/pymatgen/optimization/neighbors.pyx:655:9: Exception check after calling 'cross' will always require the GIL to be acquired. Possible solutions: 1. Declare 'cross' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'cross' to allow an error code to be returned. Compiling src/pymatgen/optimization/neighbors.pyx because it changed. [1/1] Cythonizing src/pymatgen/optimization/neighbors.pyx building 'pymatgen.optimization.neighbors' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/pymatgen/optimization/neighbors.c -o build/temp.linux-x86_64-cpython-312/src/pymatgen/optimization/neighbors.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from src/pymatgen/optimization/neighbors.c:1241: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ src/pymatgen/optimization/neighbors.c: In function '__pyx_pf_8pymatgen_12optimization_9neighbors_find_points_in_spheres': src/pymatgen/optimization/neighbors.c:21465:97: warning: passing argument 3 of '__pyx_f_8pymatgen_12optimization_9neighbors_get_bounds' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 21465 | __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__pyx_v_frac_coords, __pyx_v_max_rep, (&(*((__pyx_t_5numpy_int64_t const *) ( /* dim=0 */ ((char *) (((__pyx_t_5numpy_int64_t const *) __pyx_v_pbc.data) + __pyx_t_30)) )))), __pyx_v_max_bounds, __pyx_v_min_bounds); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 172, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3237:98: note: expected '__pyx_t_5numpy_int64_t *' {aka 'long int *'} but argument is of type 'const __pyx_t_5numpy_int64_t *' {aka 'const long int *'} 3237 | static void __pyx_f_8pymatgen_12optimization_9neighbors_get_bounds(__Pyx_memviewslice, double *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *, __pyx_t_5numpy_int64_t *); /*proto*/ | ^~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:22606:35: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 22606 | for (__pyx_t_33 = 0; __pyx_t_33 < __pyx_t_21; __pyx_t_33+=1) { | ^ src/pymatgen/optimization/neighbors.c: In function '__pyx_f_8pymatgen_12optimization_9neighbors_recip_component': src/pymatgen/optimization/neighbors.c:25529:54: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25529 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3246:63: note: expected 'double *' but argument is of type 'const double *' 3246 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25529:158: warning: passing argument 2 of '__pyx_f_8pymatgen_12optimization_9neighbors_cross' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25529 | __pyx_f_8pymatgen_12optimization_9neighbors_cross((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a2.data) + __pyx_t_1)) )))), (&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a3.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 655, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3246:73: note: expected 'double *' but argument is of type 'const double *' 3246 | static void __pyx_f_8pymatgen_12optimization_9neighbors_cross(double *, double *, double *); /*proto*/ | ^~~~~~~~ src/pymatgen/optimization/neighbors.c:25539:66: warning: passing argument 1 of '__pyx_f_8pymatgen_12optimization_9neighbors_inner' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 25539 | __pyx_t_3 = __pyx_f_8pymatgen_12optimization_9neighbors_inner((&(*((double const *) ( /* dim=0 */ ((char *) (((double const *) __pyx_v_a1.data) + __pyx_t_2)) )))), __pyx_v_ai_cross_aj); if (unlikely(__pyx_t_3 == ((double)-1) && __Pyx_ErrOccurredWithGIL())) __PYX_ERR(0, 656, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/pymatgen/optimization/neighbors.c:3245:65: note: expected 'double *' but argument is of type 'const double *' 3245 | static double __pyx_f_8pymatgen_12optimization_9neighbors_inner(double *, double *); /*proto*/ | ^~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymatgen-2024.10.29+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/pymatgen/optimization/neighbors.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/pymatgen/optimization/neighbors.cpython-312-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/ext copying build/lib.linux-x86_64-cpython-312/pymatgen/ext/cod.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-312/pymatgen/ext/matproj_legacy.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-312/pymatgen/ext/matproj.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext copying build/lib.linux-x86_64-cpython-312/pymatgen/ext/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/ext creating build/bdist.linux-x86_64/wheel/pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/chargemol_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/vampire_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/bader_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/enumlib_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/mcsqs_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/lewis.lib -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/gulp_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/bush.lib -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/OxideTersoffPotentials -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line copying build/lib.linux-x86_64-cpython-312/pymatgen/command_line/critic2_caller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/command_line creating build/bdist.linux-x86_64/wheel/pymatgen/alchemy copying build/lib.linux-x86_64-cpython-312/pymatgen/alchemy/filters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-312/pymatgen/alchemy/materials.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-312/pymatgen/alchemy/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy copying build/lib.linux-x86_64-cpython-312/pymatgen/alchemy/transmuters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/alchemy creating build/bdist.linux-x86_64/wheel/pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/piezo_sensitivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/quasirrho.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/op_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/bond_valence.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/bonds_jmol_ob.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xps.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/bvparam_1991.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/energy_models.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/quasiharmonic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/reaction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/topological/spillage.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/topological/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/topological copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/local_env.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism/jahnteller.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism/default_magmoms.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/magnetism/heisenberg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/magnetism copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/disorder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ewald.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/costdb_elements.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/phase_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/hhi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ionic_radii.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/dimensionality.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/vesta_cutoffs.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/surface_analysis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/graphs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interface_reactions.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/transition_state.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/prototypes.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chempot_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/gb copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/gb/grain.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/gb copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/gb/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/gb copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/cost.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar/am1.5G.dat -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/solar/slme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/solar copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/excitation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/xrd.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/neutron.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/tem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/diffraction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/fragmenter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/piezo.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/wulff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces/substrate_analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces/coherent_interfaces.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces/zsl.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/interfaces/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/interfaces copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/icsd_bv.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/aflow_prototypes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/volume_predictor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/data/lambda.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction/data copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/substitutor.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_prediction/substitution_probability.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/structure_prediction copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/nmr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/hhi_data.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/molecule_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/structure_matcher.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xas/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/xas/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/xas copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/thermochemistry.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/functional_groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity/elastic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity/strain.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/elasticity/stress.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/elasticity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/molecule_structure_comparator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/adsorption.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/coordination_environments creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/connectivity creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/math_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/defs_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/func_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/utils/graph_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv/utils copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/chemenv/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/chemenv copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/eos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ferroelectricity/polarization.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/ferroelectricity/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis/ferroelectricity copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/bond_dissociation.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/pourbaix_diagram.py -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis copying build/lib.linux-x86_64-cpython-312/pymatgen/analysis/cn_opt_params.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/analysis creating build/bdist.linux-x86_64/wheel/pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/gruneisen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/thermal_displacements.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon copying build/lib.linux-x86_64-cpython-312/pymatgen/phonon/ir_spectra.py -> build/bdist.linux-x86_64/wheel/./pymatgen/phonon creating build/bdist.linux-x86_64/wheel/pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/vis/structure_chemview.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/vis/plotters.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/vis/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/vis/ElementColorSchemes.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/vis/structure_vtk.py -> build/bdist.linux-x86_64/wheel/./pymatgen/vis copying build/lib.linux-x86_64-cpython-312/pymatgen/dao.py -> build/bdist.linux-x86_64/wheel/./pymatgen creating build/bdist.linux-x86_64/wheel/pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/qchem/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/qchem copying build/lib.linux-x86_64-cpython-312/pymatgen/io/phonopy.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/template.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xtb/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/xtb creating build/bdist.linux-x86_64/wheel/pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-312/pymatgen/io/exciting/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting copying build/lib.linux-x86_64-cpython-312/pymatgen/io/exciting/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/exciting creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/data.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps creating build/bdist.linux-x86_64/wheel/pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates/msd.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates/md.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates/thermalization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/templates/minimization.template -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps/templates copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/generators.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lammps/CoeffsDataType.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lammps copying build/lib.linux-x86_64-cpython-312/pymatgen/io/multiwfn.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/shengbte.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/common.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cif.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster creating build/bdist.linux-x86_64/wheel/pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster/lobster_basis copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lobster/lobsterenv.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/lobster copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/gaussian.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/ase.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/jarvis.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xyz.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/openff.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/pwscf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/netcdf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/abiobjects.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/pseudos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/abitimer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/abinit/variable.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/abinit copying build/lib.linux-x86_64-cpython-312/pymatgen/io/res.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-312/pymatgen/io/pwmat/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/pwmat copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cssr.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/lmto.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/adf.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/prismatic.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/zeopp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/packmol.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k/utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/cp2k/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/cp2k copying build/lib.linux-x86_64-cpython-312/pymatgen/io/fiesta.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/atat.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/babel.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/wannier90.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/optimade.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/xcrysden.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/potcar-summary-stats.json.bz2 -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/PBE64Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MatPESStaticSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/incar_parameters.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MPRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MVLGWSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/help.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/VASPIncarBase.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/optics.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/PBE54Base.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MVLRelax52Set.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MITRelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/vdW_parameters.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp copying build/lib.linux-x86_64-cpython-312/pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/vasp creating build/bdist.linux-x86_64/wheel/pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/MPEXELFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/sets.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/MPEXAFSSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/MPELNESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/feff/MPXANESSet.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/io/feff copying build/lib.linux-x86_64-cpython-312/pymatgen/io/icet.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io copying build/lib.linux-x86_64-cpython-312/pymatgen/io/nwchem.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io creating build/bdist.linux-x86_64/wheel/pymatgen/io/aims creating build/bdist.linux-x86_64/wheel/pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets/base.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets/bs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets/magnetism.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/sets/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims/sets copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/inputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/outputs.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims copying build/lib.linux-x86_64-cpython-312/pymatgen/io/aims/parsers.py -> build/bdist.linux-x86_64/wheel/./pymatgen/io/aims creating build/bdist.linux-x86_64/wheel/pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/entry_tools.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/exp_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/correction_calculator.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/MP2020Compatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/computed_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries creating build/bdist.linux-x86_64/wheel/pymatgen/entries/data copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/data/g_els.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/data/nist_gas_gf.json -> build/bdist.linux-x86_64/wheel/./pymatgen/entries/data copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/calc_compounds.json.gz -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/MITCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/mixing_scheme.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/compatibility.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/exp_entries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/entries copying build/lib.linux-x86_64-cpython-312/pymatgen/entries/MPCompatibility.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/entries creating build/bdist.linux-x86_64/wheel/pymatgen/optimization copying build/lib.linux-x86_64-cpython-312/pymatgen/optimization/neighbors.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-312/pymatgen/optimization/linear_assignment.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization copying build/lib.linux-x86_64-cpython-312/pymatgen/optimization/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/optimization creating build/bdist.linux-x86_64/wheel/pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg_potcar.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg_analyze.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg_config.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/feff_plot_cross_section.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg_plot.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/pmg_structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/get_environment.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli copying build/lib.linux-x86_64-cpython-312/pymatgen/cli/feff_plot_dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/cli creating build/bdist.linux-x86_64/wheel/pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/maggroups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/symm_ops.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/groups.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/symm_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/settings.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/kpath.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/symm_data.yaml -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/symm_data_magnetic.sqlite -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/site_symmetries.py -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry copying build/lib.linux-x86_64-cpython-312/pymatgen/symmetry/symm_ops.json -> build/bdist.linux-x86_64/wheel/./pymatgen/symmetry creating build/bdist.linux-x86_64/wheel/pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/misc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/io_utils.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/plotting.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/util/testing copying build/lib.linux-x86_64-cpython-312/pymatgen/util/testing/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util/testing copying build/lib.linux-x86_64-cpython-312/pymatgen/util/num.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/provenance.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/joblib.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Si_SiO2_Interface.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Li10GeP2S12.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Si.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/La2CoO4F.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/VO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/LiFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/K2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Li3V2(PO4)3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/TiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/BaNiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Li2O2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Graphite.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/SiO2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Li2O.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/TlBiSe2.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/NaFePO4.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/CsCl.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/SrTiO3.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Pb2TiZrO6.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/He_BCC.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/structures/Sn.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util/structures copying build/lib.linux-x86_64-cpython-312/pymatgen/util/due.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/coord_cython.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/typing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/numba.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/plotly_chempot_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/coord.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/graph_hashing.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/plotly_interface_rxn_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/string.py -> build/bdist.linux-x86_64/wheel/./pymatgen/util copying build/lib.linux-x86_64-cpython-312/pymatgen/util/plotly_pd_layouts.json -> build/bdist.linux-x86_64/wheel/./pymatgen/util creating build/bdist.linux-x86_64/wheel/pymatgen/transformations copying build/lib.linux-x86_64-cpython-312/pymatgen/transformations/advanced_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-312/pymatgen/transformations/standard_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-312/pymatgen/transformations/site_transformations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-312/pymatgen/transformations/transformation_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations copying build/lib.linux-x86_64-cpython-312/pymatgen/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/transformations creating build/bdist.linux-x86_64/wheel/pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/conversion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/analyzer.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/insertion_battery.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/battery/battery_abc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/battery copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps creating build/bdist.linux-x86_64/wheel/pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg/queen.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg/hive.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg copying build/lib.linux-x86_64-cpython-312/pymatgen/apps/borg/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/apps/borg creating build/bdist.linux-x86_64/wheel/pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/bond_lengths.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/composition.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/xcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/reconstructions_archive.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/func_groups.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/periodic_table.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/operations.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/bonds.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/interface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/sites.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/libxcfunc.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/ion.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/quad_data.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/periodic_table.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/surface.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/structure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/spectrum.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/units.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/molecular_orbitals.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/lattice.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/trajectory.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/tensors.py -> build/bdist.linux-x86_64/wheel/./pymatgen/core copying build/lib.linux-x86_64-cpython-312/pymatgen/core/libxc_docs.json -> build/bdist.linux-x86_64/wheel/./pymatgen/core creating build/bdist.linux-x86_64/wheel/pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/bandstructure.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/cohp.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/dos.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/core.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/boltztrap.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/plotter.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/__init__.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/electronic_structure/boltztrap2.py -> build/bdist.linux-x86_64/wheel/./pymatgen/electronic_structure copying build/lib.linux-x86_64-cpython-312/pymatgen/py.typed -> build/bdist.linux-x86_64/wheel/./pymatgen running install_egg_info running egg_info creating src/pymatgen.egg-info writing src/pymatgen.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:161: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to src/pymatgen.egg-info/dependency_links.txt writing entry points to src/pymatgen.egg-info/entry_points.txt writing requirements to src/pymatgen.egg-info/requires.txt writing top-level names to src/pymatgen.egg-info/top_level.txt writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' reading manifest file 'src/pymatgen.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/pymatgen.egg-info/SOURCES.txt' Copying src/pymatgen.egg-info to build/bdist.linux-x86_64/wheel/./pymatgen-2024.10.29.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pymatgen-2024.10.29.dist-info/WHEEL creating '/build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/.tmp-33ek8myi/pymatgen-2024.10.29-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pymatgen/dao.py' adding 'pymatgen/py.typed' adding 'pymatgen/alchemy/__init__.py' adding 'pymatgen/alchemy/filters.py' adding 'pymatgen/alchemy/materials.py' adding 'pymatgen/alchemy/transmuters.py' adding 'pymatgen/analysis/adsorption.py' adding 'pymatgen/analysis/aflow_prototypes.json' adding 'pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv' adding 'pymatgen/analysis/bond_dissociation.py' adding 'pymatgen/analysis/bond_valence.py' adding 'pymatgen/analysis/bonds_jmol_ob.yaml' adding 'pymatgen/analysis/bvparam_1991.yaml' adding 'pymatgen/analysis/chempot_diagram.py' adding 'pymatgen/analysis/cn_opt_params.yaml' adding 'pymatgen/analysis/cost.py' adding 'pymatgen/analysis/costdb_elements.csv' adding 'pymatgen/analysis/dimensionality.py' adding 'pymatgen/analysis/disorder.py' adding 'pymatgen/analysis/energy_models.py' adding 'pymatgen/analysis/eos.py' adding 'pymatgen/analysis/ewald.py' adding 'pymatgen/analysis/excitation.py' adding 'pymatgen/analysis/fragmenter.py' adding 'pymatgen/analysis/functional_groups.py' adding 'pymatgen/analysis/graphs.py' adding 'pymatgen/analysis/hhi.py' adding 'pymatgen/analysis/hhi_data.csv' adding 'pymatgen/analysis/icsd_bv.yaml' adding 'pymatgen/analysis/interface_reactions.py' adding 'pymatgen/analysis/ionic_radii.json' adding 'pymatgen/analysis/local_env.py' adding 'pymatgen/analysis/molecule_matcher.py' adding 'pymatgen/analysis/molecule_structure_comparator.py' adding 'pymatgen/analysis/nmr.py' adding 'pymatgen/analysis/op_params.yaml' adding 'pymatgen/analysis/phase_diagram.py' adding 'pymatgen/analysis/piezo.py' adding 'pymatgen/analysis/piezo_sensitivity.py' adding 'pymatgen/analysis/pourbaix_diagram.py' adding 'pymatgen/analysis/prototypes.py' adding 'pymatgen/analysis/quasiharmonic.py' adding 'pymatgen/analysis/quasirrho.py' adding 'pymatgen/analysis/reaction_calculator.py' adding 'pymatgen/analysis/structure_analyzer.py' adding 'pymatgen/analysis/structure_matcher.py' adding 'pymatgen/analysis/surface_analysis.py' adding 'pymatgen/analysis/thermochemistry.py' adding 'pymatgen/analysis/transition_state.py' adding 'pymatgen/analysis/vesta_cutoffs.yaml' adding 'pymatgen/analysis/wulff.py' adding 'pymatgen/analysis/xps.py' adding 'pymatgen/analysis/chemenv/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/__init__.py' adding 'pymatgen/analysis/chemenv/connectivity/connected_components.py' adding 'pymatgen/analysis/chemenv/connectivity/connectivity_finder.py' adding 'pymatgen/analysis/chemenv/connectivity/environment_nodes.py' adding 'pymatgen/analysis/chemenv/connectivity/structure_connectivity.py' adding 'pymatgen/analysis/chemenv/coordination_environments/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py' adding 'pymatgen/analysis/chemenv/coordination_environments/structure_environments.py' adding 'pymatgen/analysis/chemenv/coordination_environments/voronoi.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py' adding 'pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt' adding 'pymatgen/analysis/chemenv/utils/__init__.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_config.py' adding 'pymatgen/analysis/chemenv/utils/chemenv_errors.py' adding 'pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py' adding 'pymatgen/analysis/chemenv/utils/defs_utils.py' adding 'pymatgen/analysis/chemenv/utils/func_utils.py' adding 'pymatgen/analysis/chemenv/utils/graph_utils.py' adding 'pymatgen/analysis/chemenv/utils/math_utils.py' adding 'pymatgen/analysis/chemenv/utils/scripts_utils.py' adding 'pymatgen/analysis/diffraction/__init__.py' adding 'pymatgen/analysis/diffraction/atomic_scattering_params.json' adding 'pymatgen/analysis/diffraction/core.py' adding 'pymatgen/analysis/diffraction/neutron.py' adding 'pymatgen/analysis/diffraction/neutron_scattering_length.json' adding 'pymatgen/analysis/diffraction/tem.py' adding 'pymatgen/analysis/diffraction/xrd.py' adding 'pymatgen/analysis/elasticity/__init__.py' adding 'pymatgen/analysis/elasticity/elastic.py' adding 'pymatgen/analysis/elasticity/strain.py' adding 'pymatgen/analysis/elasticity/stress.py' adding 'pymatgen/analysis/ferroelectricity/__init__.py' adding 'pymatgen/analysis/ferroelectricity/polarization.py' adding 'pymatgen/analysis/gb/__init__.py' adding 'pymatgen/analysis/gb/grain.py' adding 'pymatgen/analysis/interfaces/__init__.py' adding 'pymatgen/analysis/interfaces/coherent_interfaces.py' adding 'pymatgen/analysis/interfaces/substrate_analyzer.py' adding 'pymatgen/analysis/interfaces/zsl.py' adding 'pymatgen/analysis/magnetism/__init__.py' adding 'pymatgen/analysis/magnetism/analyzer.py' adding 'pymatgen/analysis/magnetism/default_magmoms.yaml' adding 'pymatgen/analysis/magnetism/heisenberg.py' adding 'pymatgen/analysis/magnetism/jahnteller.py' adding 'pymatgen/analysis/solar/__init__.py' adding 'pymatgen/analysis/solar/am1.5G.dat' adding 'pymatgen/analysis/solar/slme.py' adding 'pymatgen/analysis/structure_prediction/DLS_bond_params.yaml' adding 'pymatgen/analysis/structure_prediction/__init__.py' adding 'pymatgen/analysis/structure_prediction/dopant_predictor.py' adding 'pymatgen/analysis/structure_prediction/substitution_probability.py' adding 'pymatgen/analysis/structure_prediction/substitutor.py' adding 'pymatgen/analysis/structure_prediction/volume_predictor.py' adding 'pymatgen/analysis/structure_prediction/data/lambda.json' adding 'pymatgen/analysis/structure_prediction/data/pair_correlation.json' adding 'pymatgen/analysis/topological/__init__.py' adding 'pymatgen/analysis/topological/spillage.py' adding 'pymatgen/analysis/xas/__init__.py' adding 'pymatgen/analysis/xas/spectrum.py' adding 'pymatgen/apps/__init__.py' adding 'pymatgen/apps/battery/__init__.py' adding 'pymatgen/apps/battery/analyzer.py' adding 'pymatgen/apps/battery/battery_abc.py' adding 'pymatgen/apps/battery/conversion_battery.py' adding 'pymatgen/apps/battery/insertion_battery.py' adding 'pymatgen/apps/battery/plotter.py' adding 'pymatgen/apps/borg/__init__.py' adding 'pymatgen/apps/borg/hive.py' adding 'pymatgen/apps/borg/queen.py' adding 'pymatgen/cli/__init__.py' adding 'pymatgen/cli/feff_plot_cross_section.py' adding 'pymatgen/cli/feff_plot_dos.py' adding 'pymatgen/cli/get_environment.py' adding 'pymatgen/cli/pmg.py' adding 'pymatgen/cli/pmg_analyze.py' adding 'pymatgen/cli/pmg_config.py' adding 'pymatgen/cli/pmg_plot.py' adding 'pymatgen/cli/pmg_potcar.py' adding 'pymatgen/cli/pmg_structure.py' adding 'pymatgen/command_line/OxideTersoffPotentials' adding 'pymatgen/command_line/__init__.py' adding 'pymatgen/command_line/bader_caller.py' adding 'pymatgen/command_line/bush.lib' adding 'pymatgen/command_line/chargemol_caller.py' adding 'pymatgen/command_line/critic2_caller.py' adding 'pymatgen/command_line/enumlib_caller.py' adding 'pymatgen/command_line/gulp_caller.py' adding 'pymatgen/command_line/lewis.lib' adding 'pymatgen/command_line/mcsqs_caller.py' adding 'pymatgen/command_line/vampire_caller.py' adding 'pymatgen/core/__init__.py' adding 'pymatgen/core/bond_lengths.json' adding 'pymatgen/core/bonds.py' adding 'pymatgen/core/composition.py' adding 'pymatgen/core/func_groups.json' adding 'pymatgen/core/interface.py' adding 'pymatgen/core/ion.py' adding 'pymatgen/core/lattice.py' adding 'pymatgen/core/libxc_docs.json' adding 'pymatgen/core/libxcfunc.py' adding 'pymatgen/core/molecular_orbitals.py' adding 'pymatgen/core/operations.py' adding 'pymatgen/core/periodic_table.json' adding 'pymatgen/core/periodic_table.py' adding 'pymatgen/core/quad_data.json' adding 'pymatgen/core/reconstructions_archive.json' adding 'pymatgen/core/sites.py' adding 'pymatgen/core/spectrum.py' adding 'pymatgen/core/structure.py' adding 'pymatgen/core/surface.py' adding 'pymatgen/core/tensors.py' adding 'pymatgen/core/trajectory.py' adding 'pymatgen/core/units.py' adding 'pymatgen/core/xcfunc.py' adding 'pymatgen/electronic_structure/__init__.py' adding 'pymatgen/electronic_structure/bandstructure.py' adding 'pymatgen/electronic_structure/boltztrap.py' adding 'pymatgen/electronic_structure/boltztrap2.py' adding 'pymatgen/electronic_structure/cohp.py' adding 'pymatgen/electronic_structure/core.py' adding 'pymatgen/electronic_structure/dos.py' adding 'pymatgen/electronic_structure/plotter.py' adding 'pymatgen/entries/MITCompatibility.yaml' adding 'pymatgen/entries/MP2020Compatibility.yaml' adding 'pymatgen/entries/MPCompatibility.yaml' adding 'pymatgen/entries/__init__.py' adding 'pymatgen/entries/calc_compounds.json.gz' adding 'pymatgen/entries/compatibility.py' adding 'pymatgen/entries/computed_entries.py' adding 'pymatgen/entries/correction_calculator.py' adding 'pymatgen/entries/entry_tools.py' adding 'pymatgen/entries/exp_compounds.json.gz' adding 'pymatgen/entries/exp_entries.py' adding 'pymatgen/entries/mixing_scheme.py' adding 'pymatgen/entries/data/g_els.json' adding 'pymatgen/entries/data/nist_gas_gf.json' adding 'pymatgen/ext/cod.py' adding 'pymatgen/ext/matproj.py' adding 'pymatgen/ext/matproj_legacy.py' adding 'pymatgen/ext/optimade.py' adding 'pymatgen/io/adf.py' adding 'pymatgen/io/ase.py' adding 'pymatgen/io/atat.py' adding 'pymatgen/io/babel.py' adding 'pymatgen/io/cif.py' adding 'pymatgen/io/common.py' adding 'pymatgen/io/core.py' adding 'pymatgen/io/cssr.py' adding 'pymatgen/io/fiesta.py' adding 'pymatgen/io/gaussian.py' adding 'pymatgen/io/icet.py' adding 'pymatgen/io/jarvis.py' adding 'pymatgen/io/lmto.py' adding 'pymatgen/io/multiwfn.py' adding 'pymatgen/io/nwchem.py' adding 'pymatgen/io/openff.py' adding 'pymatgen/io/optimade.py' adding 'pymatgen/io/packmol.py' adding 'pymatgen/io/phonopy.py' adding 'pymatgen/io/prismatic.py' adding 'pymatgen/io/pwscf.py' adding 'pymatgen/io/res.py' adding 'pymatgen/io/shengbte.py' adding 'pymatgen/io/template.py' adding 'pymatgen/io/wannier90.py' adding 'pymatgen/io/xcrysden.py' adding 'pymatgen/io/xr.py' adding 'pymatgen/io/xyz.py' adding 'pymatgen/io/zeopp.py' adding 'pymatgen/io/abinit/__init__.py' adding 'pymatgen/io/abinit/abiobjects.py' adding 'pymatgen/io/abinit/abitimer.py' adding 'pymatgen/io/abinit/inputs.py' adding 'pymatgen/io/abinit/netcdf.py' adding 'pymatgen/io/abinit/pseudos.py' adding 'pymatgen/io/abinit/variable.py' adding 'pymatgen/io/aims/__init__.py' adding 'pymatgen/io/aims/inputs.py' adding 'pymatgen/io/aims/outputs.py' adding 'pymatgen/io/aims/parsers.py' adding 'pymatgen/io/aims/sets/__init__.py' adding 'pymatgen/io/aims/sets/base.py' adding 'pymatgen/io/aims/sets/bs.py' adding 'pymatgen/io/aims/sets/core.py' adding 'pymatgen/io/aims/sets/magnetism.py' adding 'pymatgen/io/cp2k/__init__.py' adding 'pymatgen/io/cp2k/inputs.py' adding 'pymatgen/io/cp2k/outputs.py' adding 'pymatgen/io/cp2k/sets.py' adding 'pymatgen/io/cp2k/utils.py' adding 'pymatgen/io/exciting/__init__.py' adding 'pymatgen/io/exciting/inputs.py' adding 'pymatgen/io/feff/MPELNESSet.yaml' adding 'pymatgen/io/feff/MPEXAFSSet.yaml' adding 'pymatgen/io/feff/MPEXELFSSet.yaml' adding 'pymatgen/io/feff/MPXANESSet.yaml' adding 'pymatgen/io/feff/__init__.py' adding 'pymatgen/io/feff/inputs.py' adding 'pymatgen/io/feff/outputs.py' adding 'pymatgen/io/feff/sets.py' adding 'pymatgen/io/lammps/CoeffsDataType.yaml' adding 'pymatgen/io/lammps/__init__.py' adding 'pymatgen/io/lammps/data.py' adding 'pymatgen/io/lammps/generators.py' adding 'pymatgen/io/lammps/inputs.py' adding 'pymatgen/io/lammps/outputs.py' adding 'pymatgen/io/lammps/sets.py' adding 'pymatgen/io/lammps/utils.py' adding 'pymatgen/io/lammps/templates/md.template' adding 'pymatgen/io/lammps/templates/minimization.template' adding 'pymatgen/io/lammps/templates/msd.template' adding 'pymatgen/io/lammps/templates/thermalization.template' adding 'pymatgen/io/lobster/__init__.py' adding 'pymatgen/io/lobster/inputs.py' adding 'pymatgen/io/lobster/lobsterenv.py' adding 'pymatgen/io/lobster/outputs.py' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml' adding 'pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml' adding 'pymatgen/io/pwmat/__init__.py' adding 'pymatgen/io/pwmat/inputs.py' adding 'pymatgen/io/pwmat/outputs.py' adding 'pymatgen/io/qchem/__init__.py' adding 'pymatgen/io/qchem/inputs.py' adding 'pymatgen/io/qchem/outputs.py' adding 'pymatgen/io/qchem/sets.py' adding 'pymatgen/io/qchem/utils.py' adding 'pymatgen/io/vasp/MITRelaxSet.yaml' adding 'pymatgen/io/vasp/MPAbsorptionSet.yaml' adding 'pymatgen/io/vasp/MPHSERelaxSet.yaml' adding 'pymatgen/io/vasp/MPRelaxSet.yaml' adding 'pymatgen/io/vasp/MPSCANRelaxSet.yaml' adding 'pymatgen/io/vasp/MVLGWSet.yaml' adding 'pymatgen/io/vasp/MVLRelax52Set.yaml' adding 'pymatgen/io/vasp/MatPESStaticSet.yaml' adding 'pymatgen/io/vasp/PBE54Base.yaml' adding 'pymatgen/io/vasp/PBE64Base.yaml' adding 'pymatgen/io/vasp/VASPIncarBase.yaml' adding 'pymatgen/io/vasp/__init__.py' adding 'pymatgen/io/vasp/help.py' adding 'pymatgen/io/vasp/incar_parameters.json' adding 'pymatgen/io/vasp/inputs.py' adding 'pymatgen/io/vasp/optics.py' adding 'pymatgen/io/vasp/outputs.py' adding 'pymatgen/io/vasp/potcar-summary-stats.json.bz2' adding 'pymatgen/io/vasp/sets.py' adding 'pymatgen/io/vasp/vasp_potcar_file_hashes.json' adding 'pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json' adding 'pymatgen/io/vasp/vdW_parameters.yaml' adding 'pymatgen/io/xtb/__init__.py' adding 'pymatgen/io/xtb/inputs.py' adding 'pymatgen/io/xtb/outputs.py' adding 'pymatgen/optimization/__init__.py' adding 'pymatgen/optimization/linear_assignment.cpython-312-x86_64-linux-gnu.so' adding 'pymatgen/optimization/neighbors.cpython-312-x86_64-linux-gnu.so' adding 'pymatgen/phonon/__init__.py' adding 'pymatgen/phonon/bandstructure.py' adding 'pymatgen/phonon/dos.py' adding 'pymatgen/phonon/gruneisen.py' adding 'pymatgen/phonon/ir_spectra.py' adding 'pymatgen/phonon/plotter.py' adding 'pymatgen/phonon/thermal_displacements.py' adding 'pymatgen/symmetry/__init__.py' adding 'pymatgen/symmetry/analyzer.py' adding 'pymatgen/symmetry/bandstructure.py' adding 'pymatgen/symmetry/groups.py' adding 'pymatgen/symmetry/kpath.py' adding 'pymatgen/symmetry/maggroups.py' adding 'pymatgen/symmetry/settings.py' adding 'pymatgen/symmetry/site_symmetries.py' adding 'pymatgen/symmetry/structure.py' adding 'pymatgen/symmetry/symm_data.json' adding 'pymatgen/symmetry/symm_data.yaml' adding 'pymatgen/symmetry/symm_data_magnetic.sqlite' adding 'pymatgen/symmetry/symm_ops.json' adding 'pymatgen/symmetry/symm_ops.yaml' adding 'pymatgen/transformations/__init__.py' adding 'pymatgen/transformations/advanced_transformations.py' adding 'pymatgen/transformations/site_transformations.py' adding 'pymatgen/transformations/standard_transformations.py' adding 'pymatgen/transformations/transformation_abc.py' adding 'pymatgen/util/__init__.py' adding 'pymatgen/util/coord.py' adding 'pymatgen/util/coord_cython.cpython-312-x86_64-linux-gnu.so' adding 'pymatgen/util/due.py' adding 'pymatgen/util/graph_hashing.py' adding 'pymatgen/util/io_utils.py' adding 'pymatgen/util/joblib.py' adding 'pymatgen/util/misc.py' adding 'pymatgen/util/num.py' adding 'pymatgen/util/numba.py' adding 'pymatgen/util/plotly_chempot_layouts.json' adding 'pymatgen/util/plotly_interface_rxn_layouts.json' adding 'pymatgen/util/plotly_pd_layouts.json' adding 'pymatgen/util/plotting.py' adding 'pymatgen/util/provenance.py' adding 'pymatgen/util/string.py' adding 'pymatgen/util/typing.py' adding 'pymatgen/util/structures/BaNiO3.json' adding 'pymatgen/util/structures/CsCl.json' adding 'pymatgen/util/structures/Graphite.json' adding 'pymatgen/util/structures/He_BCC.json' adding 'pymatgen/util/structures/K2O2.json' adding 'pymatgen/util/structures/La2CoO4F.json' adding 'pymatgen/util/structures/Li10GeP2S12.json' adding 'pymatgen/util/structures/Li2O.json' adding 'pymatgen/util/structures/Li2O2.json' adding 'pymatgen/util/structures/Li3V2(PO4)3.json' adding 'pymatgen/util/structures/LiFePO4.json' adding 'pymatgen/util/structures/NaFePO4.json' adding 'pymatgen/util/structures/Pb2TiZrO6.json' adding 'pymatgen/util/structures/Si.json' adding 'pymatgen/util/structures/SiO2.json' adding 'pymatgen/util/structures/Si_SiO2_Interface.json' adding 'pymatgen/util/structures/Sn.json' adding 'pymatgen/util/structures/SrTiO3.json' adding 'pymatgen/util/structures/TiO2.json' adding 'pymatgen/util/structures/TlBiSe2.json' adding 'pymatgen/util/structures/VO2.json' adding 'pymatgen/util/testing/__init__.py' adding 'pymatgen/vis/ElementColorSchemes.yaml' adding 'pymatgen/vis/__init__.py' adding 'pymatgen/vis/plotters.py' adding 'pymatgen/vis/structure_chemview.py' adding 'pymatgen/vis/structure_vtk.py' adding 'pymatgen-2024.10.29.dist-info/LICENSE' adding 'pymatgen-2024.10.29.dist-info/METADATA' adding 'pymatgen-2024.10.29.dist-info/WHEEL' adding 'pymatgen-2024.10.29.dist-info/entry_points.txt' adding 'pymatgen-2024.10.29.dist-info/top_level.txt' adding 'pymatgen-2024.10.29.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pymatgen-2024.10.29-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' PYTHONPATH=/build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build \ sphinx-build docs/apidoc build/html Running Sphinx v7.4.7 loading translations [en]... done making output directory... done WARNING: html_static_path entry 'assets' does not exist WARNING: favicon file 'favicon.ico' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 49 source files that are out of date updating environment: [new config] 49 added, 0 changed, 0 removed reading sources... [ 2%] index The 道 of Pymatgen 1. Great code enables great materials science. 2. Comprehensive tests ensure robustness. 3. Clear documentation leads to more usage. 4. More usage improves code quality (and increases citations). 5. Even complex scientific ideas can be broken down into simple interfaces. 6. Deep (Hulk-level) understanding is often necessary to develop the right interface design. 7. Slow and accurate is better than fast and wrong. 8. But efficiency matters for core classes. 9. Code entropy always increases in a closed system. 10. Constant refactoring is the hallmark of an open platform. --- First Coder reading sources... [ 4%] modules reading sources... [ 6%] pymatgen reading sources... [ 8%] pymatgen.alchemy reading sources... 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[100%] pymatgen.vis /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.rst:4: WARNING: duplicate object description of pymatgen, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/dao.py:docstring of pymatgen.dao:1: WARNING: duplicate object description of pymatgen.dao, other instance in index, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:18: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/dimensionality.py:docstring of pymatgen.analysis.dimensionality.get_dimensionality_cheon:29: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.from_local_env_strategy:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.substitute_group:19: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.insert_node:15: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.substitute_group:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/interface_reactions.py:docstring of pymatgen.analysis.interface_reactions.InterfacialReactivity.labels:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:28: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:34: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CrystalNN:39: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.CutOffDictNN:17: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:9: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:20: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:25: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:36: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:39: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:40: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:42: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:46: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:54: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_all_voronoi_polyhedra:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_voronoi_polyhedra:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/nmr.py:docstring of pymatgen.analysis.nmr.ElectricFieldGradient.coupling_constant:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram.num2str:6: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDEntry.energy:1: WARNING: duplicate object description of pymatgen.analysis.phase_diagram.PDEntry.energy, other instance in pymatgen.analysis, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:23: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:5: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.order_phase_diagram:17: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiHarmonicDebyeApprox.gruneisen_parameter:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_analyzer.py:docstring of pymatgen.analysis.structure_analyzer.VoronoiAnalyzer:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher.get_transformation:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:6: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:28: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/wulff.py:docstring of pymatgen.analysis.wulff.WulffShape.shape_factor:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:8: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps.XPS:12: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:29: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:33: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:19: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.diamond_functions:22: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator.cell_intensity:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic.generate_pseudo:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization.get_same_branch_polarization_data:35: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/structure_prediction/substitutor.py:docstring of pymatgen.analysis.structure_prediction.substitutor.Substitutor.pred_from_list:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.voltage_pairs, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.rxn, other instance in pymatgen.apps.battery, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:11: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:25: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:21: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:13: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/command_line/vampire_caller.py:docstring of pymatgen.command_line.vampire_caller.VampireCaller:74: ERROR: Unknown directive type "todo". .. todo:: * Create input files in a temp folder that gets cleaned up after run terminates /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/ion.py:docstring of pymatgen.core.ion.Ion.to_reduced_dict:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.A:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.A, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.X:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.X, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.Z:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.Z, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.oxi_state:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.oxi_state, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.atomic_orbitals_eV, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.electronic_structure, other instance in pymatgen.core, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.electronic_structure:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:16: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:20: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.IStructure.matches:9: WARNING: Inline strong start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.PeriodicNeighbor:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:8: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:29: ERROR: Unknown directive type "todo". .. todo:: - Right now there is no way to specify what atom is being added. Use basis sets in the future? /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:64: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:66: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:74: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.Slab.get_surface_sites:20: ERROR: Unknown directive type "todo". .. todo:: Is there a way to determine site equivalence between sites in a slab and bulk system? This would allow us get the coordination number of a specific site for multi-elemental systems or systems with more than one inequivalent site. This will allow us to use this for compound systems. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/units.py:docstring of pymatgen.core.units.unitized:14: ERROR: Unexpected indentation. WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.name: is not a callable object WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.type: is not a callable object /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/libxcfunc.py:docstring of pymatgen.core.libxcfunc.LibxcFunc.all_kinds:1: ERROR: Unknown target name: "xc". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/core/xcfunc.py:docstring of pymatgen.core.xcfunc.XcFunc:29: ERROR: Unknown target name: "xc". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_cbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/bandstructure.py:docstring of pymatgen.electronic_structure.bandstructure.BandStructure.get_vbm:4: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:20: WARNING: Bullet list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'boltztrap2' from module 'pymatgen.electronic_structure'; the following exception was raised: BoltzTraP2 has to be installed and working /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:71: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:73: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue:74: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_coops, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.summed_icohp, other instance in pymatgen.electronic_structure, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.get_integrated_cohp_in_energy_range:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:8: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:12: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:20: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/core.py:docstring of pymatgen.electronic_structure.core.Magmom:24: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_center:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_kurtosis:5: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_skewness:5: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_width:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_n_moment:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos.get_site_orbital_dos:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.BSPlotterProjected.get_projected_plots_dots:9: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.DosPlotter:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/entries/correction_calculator.py:docstring of pymatgen.entries.correction_calculator.CorrectionCalculator.compute_corrections:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/entries/mixing_scheme.py:docstring of pymatgen.entries.mixing_scheme.MaterialsProjectDFTMixingScheme.get_mixing_state_data:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/common.py:docstring of pymatgen.io.common.VolumetricData.to_hdf5:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:57: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:63: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:64: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.get_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_spectre_plot:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.read_scan:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.read_scan, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.save_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.save_scan_plot, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.to_input:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.to_input, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/icet.py:docstring of pymatgen.io.icet.IcetSQS.enumerate_sqs_structures:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lmto.py:docstring of pymatgen.io.lmto.LMTOCopl:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.map_atoms_cps:16: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/multiwfn.py:docstring of pymatgen.io.multiwfn.match_atom_cp:18: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol:5: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:15: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_gruneisen_ph_bs_symm_line:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_ph_bs_symm_line:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/pwscf.py:docstring of pymatgen.io.pwscf.PWInput:42: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/shengbte.py:docstring of pymatgen.io.shengbte.Control:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.data:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.data, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ik:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ik, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.is_noncollinear:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.is_noncollinear, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.nbnd:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.nbnd, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ng:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ng, other instance in pymatgen.io, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:10: WARNING: Title underline too short. Zeo++ Installation Steps: ======================== /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:19: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cif.py:docstring of pymatgen.io.cif.CifBlock:9: ERROR: Unknown target name: "data". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.structure_from_abivars:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser:10: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimerParser.walk:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ShiftMode:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:30: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.calc_shiftk:37: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: Failed to get a method signature for pymatgen.io.abinit.netcdf.EtsfReader.chemical_symbols: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.ae_partial_waves: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.projector_functions: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.pseudo_core_density: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.PawXmlSetup.root: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.Pseudo.md5: is not a callable object /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.gth_header:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.oncvpsp_header:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.NcAbinitHeader.tm_header:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:23: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:30: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:31: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:38: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:40: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:47: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/pseudos.py:docstring of pymatgen.io.abinit.pseudos.PawAbinitHeader.paw_header:48: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.pseudos:1: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.structure:1: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset:35: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:4: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.num_valence_electrons:3: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.edges:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.edges, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.elf_type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.elf_type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.filename:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.filename, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.format:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.format, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.kpoint:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.kpoint, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.origin:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.origin, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.points:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.points, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.spin_state:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.spin_state, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsCube.type:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsCube.type, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.data:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.data, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/inputs.py:docstring of pymatgen.io.aims.inputs.AimsSpeciesFile.label:1: WARNING: duplicate object description of pymatgen.io.aims.inputs.AimsSpeciesFile.label, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/parsers.py:docstring of pymatgen.io.aims.parsers.AimsOutChunk.lines:1: WARNING: duplicate object description of pymatgen.io.aims.parsers.AimsOutChunk.lines, other instance in pymatgen.io.aims, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.use_structure_charge, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_kpoints_settings, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/base.py:docstring of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params:1: WARNING: duplicate object description of pymatgen.io.aims.sets.base.AimsInputGenerator.user_params, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.BandStructureSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/bs.py:docstring of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density:1: WARNING: duplicate object description of pymatgen.io.aims.sets.bs.GWSetGenerator.k_point_density, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.max_force, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.method:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.method, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.RelaxSetGenerator.relax_cell, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.host, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.SocketIOSetGenerator.port, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/core.py:docstring of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.core.StaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/aims/sets/magnetism.py:docstring of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.aims.sets.magnetism.MagneticStaticSetGenerator.calc_type, other instance in pymatgen.io.aims.sets, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.alias_names, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.element:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.element, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.filename:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.filename, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.name:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.name, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.potential:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.potential, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.AtomicMetadata.version:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.AtomicMetadata.version, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.admm:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.admm, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.cc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.cc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.contracted:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.contracted, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.core:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.core, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.diffuse:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.diffuse, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.lri:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.lri, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.molopt:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.molopt, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.pc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.pc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.polarization:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.polarization, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.sr:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.sr, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.valence:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.valence, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.BasisInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.BasisInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.coefficients, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.exponents, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.info, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmax, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.lmin, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.n, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nset, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GaussianTypeOrbitalBasisSet.nshell, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.c_exp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.hprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.n_elecs:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.n_elecs, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nexp_ppl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.nprj_ppnl, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.r_loc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.r_loc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.GthPotential.radii:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.GthPotential.radii, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.KpointSet:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Kpoint_Set:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.electrons:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.electrons, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.nlcc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.potential_type, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.PotentialInfo.xc:1: WARNING: duplicate object description of pymatgen.io.cp2k.inputs.PotentialInfo.xc, other instance in pymatgen.io.cp2k, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:17: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/outputs.py:docstring of pymatgen.io.cp2k.outputs.parse_pdos:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.CellOptSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.get_basis_and_potential:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.print_v_hartree:3: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridCellOptSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridRelaxSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.HybridStaticSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.RelaxSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.StaticSet:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/cp2k/utils.py:docstring of pymatgen.io.cp2k.utils.preprocessor:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/exciting/inputs.py:docstring of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz:1: WARNING: duplicate object description of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz, other instance in pymatgen.io.exciting, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header:6: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header.from_str:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/feff/sets.py:docstring of pymatgen.io.feff.sets.FEFFDictSet:26: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_str:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:42: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.LammpsData.set_charge_atom_type:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:25: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:29: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.calc_type, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.keep_stages, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.settings, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/generators.py:docstring of pymatgen.io.lammps.generators.BaseLammpsGenerator.template:1: WARNING: duplicate object description of pymatgen.io.lammps.generators.BaseLammpsGenerator.template, other instance in pymatgen.io.lammps, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:9: WARNING: Inline literal start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:7: WARNING: Inline literal start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:14: WARNING: Inline literal start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:19: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:21: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_commands:23: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:6: WARNING: Inline literal start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:22: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:23: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:28: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:25: WARNING: Inline literal start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/inputs.py:docstring of pymatgen.io.lammps.inputs.LammpsInputFile.add_stage:35: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData:6: ERROR: Unknown target name: "a-za-z0-9". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/lobsterenv.py:docstring of pymatgen.io.lobster.lobsterenv.LobsterNeighbors.get_info_cohps_to_neighbors:21: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:22: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:26: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:37: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Cohpcar:42: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.completedos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.completedos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.energies:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.itdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.itdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.pdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.pdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdensities, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdos, other instance in pymatgen.io.lobster, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Grosspop:12: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Icohplist:31: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.NciCobiList:18: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/pwmat/outputs.py:docstring of pymatgen.io.pwmat.outputs.DosSpin.get_partial_dos:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:64: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:66: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:67: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:74: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:79: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:81: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:86: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:97: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:99: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:101: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:102: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:117: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput:137: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/inputs.py:docstring of pymatgen.io.qchem.inputs.QCInput.pcm_nonels_template:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:13: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:68: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:97: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:110: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:119: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:127: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:135: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.ForceSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:68: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:88: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:95: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:97: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:102: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:103: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:110: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:117: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:119: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:124: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:125: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:127: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:133: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:135: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:140: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:141: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.FreqSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:81: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:101: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:108: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:110: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:115: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:116: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:123: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:130: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:132: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:137: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:138: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:140: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:146: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:148: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:153: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:154: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.OptSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.PESScanSet:88: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:87: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:107: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:108: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:119: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:126: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:128: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:133: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:134: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:141: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:148: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:150: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:155: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:156: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:158: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:164: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:166: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:171: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:172: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:173: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:183: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:186: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:188: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:190: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.QChemDictSet:191: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:76: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:90: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:97: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:99: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:104: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:105: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:112: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:119: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:121: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:126: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:127: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:129: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:135: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:137: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:142: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:143: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:144: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:152: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:155: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:157: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:159: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.SinglePointSet:160: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/qchem/sets.py:docstring of pymatgen.io.qchem.sets.TransitionStateSet:77: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.lattice_velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.lattice_velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector_preamble, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.selective_dynamics, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.velocities, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar_hash_based:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:12: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:21: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.is_valid:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.VaspInput.write_input:18: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:11: CRITICAL: Missing matching underline for section title overline. ------------------------------------------------------------- which corresponds to: [[-0.002, -0.002, -0.051, 0.0, -0.052], /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_real, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nbands:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nbands, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nkpoints:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nkpoints, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nspin:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nspin, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_imag, other instance in pymatgen.io.vasp, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_real, other instance in pymatgen.io.vasp, use :no-index: for one of them WARNING: Failed to get a method signature for pymatgen.phonon.dos.PhononDos.ind_zero_freq: is not a callable object /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:1: ERROR: Unknown interpreted text role "cite". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra.IRDielectricTensor:5: ERROR: Unknown interpreted text role "cite". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/plotter.py:docstring of pymatgen.phonon.plotter.PhononDosPlotter:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.compute_directionality_quality_criterion:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/phonon/gruneisen.py:docstring of pymatgen.phonon.gruneisen.GruneisenParameter.average_gruneisen:1: ERROR: Unknown target name: "materialia". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.PointGroupAnalyzer.symmetrize_molecule:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.SpacegroupAnalyzer.get_symmetry_dataset:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:22: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer.iterative_symmetrize:23: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/groups.py:docstring of pymatgen.symmetry.groups.PointGroup.symmetry_ops:1: WARNING: duplicate object description of pymatgen.symmetry.groups.PointGroup.symmetry_ops, other instance in pymatgen.symmetry, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:53: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.MagneticSpaceGroup:54: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:35: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:45: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:68: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:69: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.description:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.description, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.name:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.name, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/provenance.py:docstring of pymatgen.util.provenance.HistoryNode.url:1: WARNING: duplicate object description of pymatgen.util.provenance.HistoryNode.url, other instance in pymatgen.util, use :no-index: for one of them /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.util.rst:29: ERROR: Unknown target name: "int". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.util.rst:29: ERROR: Unknown target name: "float". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_graph_hash:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:23: ERROR: Unknown target name: "2". /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/util/graph_hashing.py:docstring of pymatgen.util.graph_hashing.weisfeiler_lehman_subgraph_hashes:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/modules.rst: WARNING: document isn't included in any toctree /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.alchemy.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.alchemy /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.analysis.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.analysis /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.apps.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.apps /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.cli.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.cli /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.command_line.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.command_line /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.core.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.core /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.electronic_structure.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.electronic_structure /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.entries.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.entries /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.ext.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.ext /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.io /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.optimization.rst: document is referenced in multiple toctrees: ['index', 'pymatgen'], selecting: pymatgen <- pymatgen.optimization 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WARNING: unsupported theme option 'display_version' given done copying assets... copying static files... done copying extra files... done copying assets: done writing output... [ 2%] index writing output... [ 4%] modules writing output... [ 6%] pymatgen writing output... [ 8%] pymatgen.alchemy writing output... [ 10%] pymatgen.analysis writing output... [ 12%] pymatgen.analysis.chemenv writing output... [ 14%] pymatgen.analysis.chemenv.connectivity writing output... [ 16%] pymatgen.analysis.chemenv.coordination_environments writing output... [ 18%] pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files writing output... [ 20%] pymatgen.analysis.chemenv.utils writing output... [ 22%] pymatgen.analysis.diffraction writing output... [ 24%] pymatgen.analysis.elasticity writing output... [ 27%] pymatgen.analysis.ferroelectricity writing output... [ 29%] pymatgen.analysis.gb writing output... [ 31%] pymatgen.analysis.interfaces writing output... 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[100%] pymatgen.vis /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:16: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_site_orbital_dos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.LobsterCompleteDos:1: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.cp2k.rst:29: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.lobster.rst:29: WARNING: more than one target found for cross-reference 'Orbital': pymatgen.electronic_structure.core.Orbital, pymatgen.io.vasp.inputs.Orbital /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun:129: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun.get_band_structure:1: WARNING: more than one target found for cross-reference 'BandStructure': pymatgen.electronic_structure.bandstructure.BandStructure, pymatgen.io.cp2k.inputs.BandStructure /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/docs/apidoc/pymatgen.io.vasp.rst:45: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/cpython3_3.12_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.VaspInputSet.prev_kpoints:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 649 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' py=`py3versions --default -v`; \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/pymatgen-2024.10.29+dfsg1/.pybuild/test_python$py; \ cp -a $pybuilddir $testdir; \ cp -a tests $testdir; \ SKIP_TESTS=""; \ list_initialised=0; \ for t in test_matproj TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_CifWriter test_read_write test_init test_get_site_symmetries BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ PMG_TEST_FILES_DIR=/usr/share/doc/pymatgen-test-files/examples/files \ PYTHONPATH=$testdir PATH=$pybuilddir/../scripts:$PATH \ pytest-3 -v --import-mode=prepend --color=no -k "${SKIP_TESTS}" $testdir; \ skipping tests: not ( test_matproj or TestGenKpt or TestHighSymmetryPoint or test_from_multi_jobs_file or test_from_string or test_read_molecule or test_read_nbo or test_read_negative or test_read_plots or test_read_write_nbo7 or test_all or test_custom_smd_write or test_sets or test_CifWriter or test_read_write or test_init or test_get_site_symmetries or BSDOSPlotterTest or test_cdft_dc_parsing or test_get_structure_by_id or test_babel_PC_with_RO_depth_0_vs_depth_10 or test_fit ) ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/pymatgen-2024.10.29+dfsg1 configfile: pyproject.toml plugins: typeguard-4.4.1 collected 2950 items / 283 deselected / 7 skipped / 2667 selected .pybuild/test_python3.12/tests/alchemy/test_filters.py ....... 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[100%] ============================= slowest 30 durations ============================= 53.99s call .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 35.16s call .pybuild/test_python3.12/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 33.93s call .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 27.07s call .pybuild/test_python3.12/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 24.94s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 19.72s call .pybuild/test_python3.12/tests/core/test_surface.py::TestSlab::test_symmetrization 18.67s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 18.20s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 18.17s call .pybuild/test_python3.12/tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 18.11s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 18.03s call .pybuild/test_python3.12/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 18.01s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 17.56s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 16.60s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 16.55s call .pybuild/test_python3.12/tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops 16.50s call .pybuild/test_python3.12/tests/io/vasp/test_optics.py::TestVasprun::test_optics 16.41s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 16.34s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 16.06s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 16.04s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 15.27s call .pybuild/test_python3.12/tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 14.87s call .pybuild/test_python3.12/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 14.68s call .pybuild/test_python3.12/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 13.09s call .pybuild/test_python3.12/tests/core/test_surface.py::TestSlab::test_get_symmetric_sites 12.26s call .pybuild/test_python3.12/tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 11.98s call .pybuild/test_python3.12/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 11.56s call .pybuild/test_python3.12/tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states 11.11s call .pybuild/test_python3.12/tests/cli/test_pmg_plot.py::test_plot_chgint 10.33s call .pybuild/test_python3.12/tests/symmetry/test_groups.py::TestSpaceGroup::test_point_group_is_set 10.26s call .pybuild/test_python3.12/tests/core/test_surface.py::TestMillerIndexFinder::test_generate_all_slabs =========================== short test summary info ============================ SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_cod.py:25: www.crystallography.net is down SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_matproj.py:44: MP API is down SKIPPED [1] .pybuild/test_python3.12/tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 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SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_vampire_caller.py:34: vampire executable not present SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:712: Only run this in CI tests SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:105: enumlib or mcsqs executable not present SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1832: chgnet is failing with Numpy 1, see #3992 SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1904: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:985: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1807: chgnet is failing with Numpy 1, see #3992 SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1916: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1927: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1936: TODO: #3958 wait for matgl resolve of torch dependency SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2567: could not import 'tblite': No module named 'tblite' SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2575: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 SKIPPED [1] .pybuild/test_python3.12/tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily SKIPPED [1] .pybuild/test_python3.12/tests/core/test_xcfunc.py:56: TODO: SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:252: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:219: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:239: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:167: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:197: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:230: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:99: No FDINT SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:121: No x_trans. SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:201: No x_trans. 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SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_optimade.py:40: MP OPTIMADE is down. SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_optimade.py:93: OPTIMADE providers list is down. SKIPPED [1] .pybuild/test_python3.12/tests/io/test_cif.py:292: non-free PF*.cif test files are not available SKIPPED [1] .pybuild/test_python3.12/tests/io/test_jarvis.py:12: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.12/tests/io/test_jarvis.py:20: JARVIS-tools not loaded. SKIPPED [1] .pybuild/test_python3.12/tests/io/vasp/test_help.py:22: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.12/tests/io/vasp/test_help.py:31: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.12/tests/io/vasp/test_help.py:37: www.vasp.at is down SKIPPED [1] .pybuild/test_python3.12/tests/io/vasp/test_inputs.py:1469: TODO: need someone to fix this SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpaths.py:21: No seek path present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:97: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:158: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:188: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:203: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:229: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:241: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:356: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:296: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:334: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:326: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:344: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:484: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:532: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:541: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:599: mcsqs not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:609: mcsqs not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:630: mcsqs not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:662: icet not installed. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:648: icet not installed. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:673: icet not installed. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:866: hiphive not present SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_site_transformations.py:213: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:227: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:244: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:262: enum_lib not present. SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:268: enum_lib not present. ======== 2526 passed, 148 skipped, 283 deselected in 1372.25s (0:22:52) ======== ..tot conformations = 3 ..tot confs tested = 3 ..below energy threshold = 3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pymatgen-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:339: Ignoring complex environment marker: boltztrap2>=24.9.4; platform_system != "Windows" and extra == "optional" I: dh_python3 pydist:339: Ignoring complex environment marker: tblite[ase]>=0.3.0; (platform_system == "Linux" and python_version < "3.12") and extra == "optional" I: dh_python3 pydist:339: Ignoring complex environment marker: tblite[ase]>=0.3.0; python_version < "3.12" and extra == "tblite" debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2024.10.29+dfsg1' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymatgen-dbgsym' in '../python3-pymatgen-dbgsym_2024.10.29+dfsg1-3_amd64.deb'. dpkg-deb: building package 'python3-pymatgen' in '../python3-pymatgen_2024.10.29+dfsg1-3_amd64.deb'. dpkg-deb: building package 'python-pymatgen-doc' in '../python-pymatgen-doc_2024.10.29+dfsg1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../pymatgen_2024.10.29+dfsg1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pymatgen-2024.10.29+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/909998 and its subdirectories I: Current time: Tue Dec 16 00:07:48 -12 2025 I: pbuilder-time-stamp: 1765886868 Wed Nov 13 05:44:50 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Wed Nov 13 05:44:50 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Wed Nov 13 06:10:18 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Wed Nov 13 06:10:19 UTC 2024 I: pymatgen_2024.10.29+dfsg1-3_amd64.changes: Format: 1.8 Date: Sun, 10 Nov 2024 10:12:06 +0100 Source: pymatgen Binary: python-pymatgen-doc python3-pymatgen python3-pymatgen-dbgsym Architecture: all amd64 Version: 2024.10.29+dfsg1-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-pymatgen-doc - Python Materials Genomics for materials analysis (documentation) python3-pymatgen - Python Materials Genomics for materials analysis Changes: pymatgen (2024.10.29+dfsg1-3) unstable; urgency=medium . * revert and reset debian patch neighbor_set_int64.patch to use intp instead of int64 when creating separation indices * skip test_relax_ase_return_traj on mips64el * skip test_read_fe (abinit/test_netcdf.py) on s390x and ppc64. Is it a bigendian netCDF issue? Assume hppa, powerpc also affected. Checksums-Sha1: eb588f29ffd96c9b3b2a8d9c5274dfd17f2f7257 17244 pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo 3511c1f57ac972283e10e1b944f6280316ddcee7 1259292 python-pymatgen-doc_2024.10.29+dfsg1-3_all.deb f6d4ea3b9be5c63ada5003d655bf41b0387690a0 1210496 python3-pymatgen-dbgsym_2024.10.29+dfsg1-3_amd64.deb a1fd0b95820e611107e8a006ddeb2191813742ad 2528212 python3-pymatgen_2024.10.29+dfsg1-3_amd64.deb Checksums-Sha256: 0230cffb1932c639f80b4e0c035790813aafd9c5d8d1e77922cb1eac95adc273 17244 pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo faa134e3c7fe30adb3cae78448420b62ed10bcecb993749118fa3cf8d504fd7f 1259292 python-pymatgen-doc_2024.10.29+dfsg1-3_all.deb a369ae0e110473d7070d0c94cbae729abb70faf8cb14460bf259f71d87f8b1a4 1210496 python3-pymatgen-dbgsym_2024.10.29+dfsg1-3_amd64.deb 33c056d37b618a8ce318cb77deecc210152a94c25aeb8589734634f24d416170 2528212 python3-pymatgen_2024.10.29+dfsg1-3_amd64.deb Files: 6e27a3d75c7255c6db37d1bb55fdaaec 17244 python optional pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo b78f63919e555b09efd1d27c010d8f47 1259292 doc optional python-pymatgen-doc_2024.10.29+dfsg1-3_all.deb 24851dd00e716c75bd906c4bca9ccb71 1210496 debug optional python3-pymatgen-dbgsym_2024.10.29+dfsg1-3_amd64.deb 7455b2e6a686f599d240d57fa6f7027b 2528212 python optional python3-pymatgen_2024.10.29+dfsg1-3_amd64.deb Wed Nov 13 06:10:20 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-33508.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/pymatgen_2024.10.29+dfsg1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/pymatgen_2024.10.29+dfsg1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/pymatgen_2024.10.29+dfsg1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/b1/pymatgen_2024.10.29+dfsg1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TXmJU1RE/b2/pymatgen_2024.10.29+dfsg1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.461s) 0.461s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.072s) 0.072s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 834ms CPU time consumed: 827ms Wed Nov 13 06:10:22 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Wed Nov 13 06:10:22 UTC 2024 I: pymatgen from trixie built successfully and reproducibly on amd64. Wed Nov 13 06:10:23 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Nov 13 06:10:23 UTC 2024 I: Submitting 20K b1/pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo.asc Wed Nov 13 06:10:24 UTC 2024 I: Submitting 20K b2/pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo.asc Wed Nov 13 06:10:25 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 13 06:10:25 UTC 2024 I: Done submitting .buildinfo files. Wed Nov 13 06:10:25 UTC 2024 I: Removing signed pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo.asc files: removed './b1/pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo.asc' removed './b2/pymatgen_2024.10.29+dfsg1-3_amd64.buildinfo.asc'