Mon Apr 29 12:22:31 UTC 2024 I: starting to build phat/trixie/amd64 on jenkins on '2024-04-29 12:22' Mon Apr 29 12:22:31 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/7271/console.log Mon Apr 29 12:22:31 UTC 2024 I: Downloading source for trixie/phat=1.6-2 --2024-04-29 12:22:31-- http://deb.debian.org/debian/pool/main/p/phat/phat_1.6-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2075 (2.0K) [text/prs.lines.tag] Saving to: ‘phat_1.6-2.dsc’ 0K .. 100% 265M=0s 2024-04-29 12:22:31 (265 MB/s) - ‘phat_1.6-2.dsc’ saved [2075/2075] Mon Apr 29 12:22:31 UTC 2024 I: phat_1.6-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phat Binary: libphat-dev, phat-utils, python3-phat Architecture: any all Version: 1.6-2 Maintainer: Gard Spreemann Homepage: https://bitbucket.org/phat-code/phat Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/gspr/phat.git Vcs-Git: https://salsa.debian.org/gspr/phat.git -b debian/sid Testsuite: autopkgtest Testsuite-Triggers: python3-all, shunit2 Build-Depends: cmake, debhelper-compat (= 13), dh-python, python3-all-dev, python3-pybind11, python3-setuptools Package-List: libphat-dev deb libdevel optional arch=all phat-utils deb math optional arch=any python3-phat deb python optional arch=any Checksums-Sha1: 4ce66cef464996a061c02fdfece49939f7a89959 4760688 phat_1.6.orig.tar.gz 1e22a57e7b138eece2cc97687f6e4a1f0d52045e 4692 phat_1.6-2.debian.tar.xz Checksums-Sha256: 7b25d1c16ffa678f2c0cb3b71d41fa83343b306da6f275d59aba2a14b74e3134 4760688 phat_1.6.orig.tar.gz d37d7195cd436f959285008a44d16374e75d8989248c484f56123a521945df35 4692 phat_1.6-2.debian.tar.xz Files: aa38a62aee5b8072b86ef041377b8717 4760688 phat_1.6.orig.tar.gz 2094ac59af5ba9101a4c86ee9a756c5e 4692 phat_1.6-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEz8XvhRCFHnNVtV6AnRFYKv1UjPoFAmAMXLUSHGdzcHJAbm9u ZW1wdHkub3JnAAoJEJ0RWCr9VIz6fLsQAL9DQiLzai7b9ttia7/Tz60osKVM++eb mYgP+sxG6EMJVJUZMP6ceoT/XbCRpgpK0/zgcsiPwYuukNltFKGEHOMmg0OLuipP Sue3AaKHGMwPXaquGjwA02BKDdNP8adAJkGtMuIt0CIyrGDgwH7031uJp431y1wU GuT1P86LjWElDWuF1sv6p7orlo9a1RGL3CSrjJEwhRNcmWzJJ3IyYjuF/Shl8dfv UmRRmA15f5NhczniOJqVV8hiYdXhiRxMl8mF4sV2E0z5nq6hoSp5WWYxktv53tcs mZZAhVBStrzBqr2aZ+s61dH215vlkQRKQGV0h/MgaNQbVdWqjelUH6jI0EHAh0RW SwaTjDuNtZn0DYozVkIQF4s29HhFkXbiOJw4bS67a3dHu1fK4AJe2TCFCrPp4/j3 7ONsstB+Zallf+zUTOYnDrdBbqILKJDBNGXMPV1pEOKfJmJOvrTk31Hoy67mGJ00 d7/hrnrcwn5a2cLe3fGD9CXmZ5uJiSlZVLa9dA4OHyhzmxDTvTYZ8yKETPGkzCSS hAuXHLJZsraL7gaACIROwjnFMvcN68kC+cjy2B7XX7Zrcocx4V+rGd3TBNjW4VTv Y8b384jBp76lykbdMKmBkRQ96epmS0YMRvWgZYJqlx60mqsceS49Ux9kogvLMEHR YHSWDbBh5pjB =fNbD -----END PGP SIGNATURE----- Mon Apr 29 12:22:31 UTC 2024 I: Checking whether the package is not for us Mon Apr 29 12:22:31 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Apr 29 12:22:31 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Apr 29 12:31:48 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 1 06:45:35 -12 2025 I: pbuilder-time-stamp: 1748803535 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [phat_1.6-2.dsc] I: copying [./phat_1.6.orig.tar.gz] I: copying [./phat_1.6-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jan 23 17:28:21 2021 gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA gpgv: issuer "gspr@nonempty.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./phat_1.6-2.dsc: no acceptable signature found dpkg-source: info: extracting phat in phat-1.6 dpkg-source: info: unpacking phat_1.6.orig.tar.gz dpkg-source: info: unpacking phat_1.6-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Don-t-force-CMAKE_BUILD_TYPE-Release.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1368002/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f04d2cce67974ce8b075e71da9af7940' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1368002' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/pbuilderrc_KD2L --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/b1 --logfile b1/build.log phat_1.6-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1368002/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, python3-all-dev, python3-pybind11, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.5 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: cmake but it is not installable Depends: dh-python but it is not installable Depends: python3-all-dev but it is not installable Depends: python3-pybind11 but it is not installable Depends: python3-setuptools but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libdb5.3 [5.3.28+dfsg2-4+b1 (now)] 2) libssl3 [3.1.5-1 (now)] Install the following packages: 3) cmake [3.28.3-1 (testing)] 4) cmake-data [3.28.3-1 (testing)] 5) dh-python [6.20240422 (testing)] 6) libarchive13t64 [3.7.2-2 (testing)] 7) libbrotli1 [1.1.0-2+b3 (testing)] 8) libcom-err2 [1.47.0-2.4 (testing)] 9) libcurl4t64 [8.7.1-3 (testing)] 10) libdb5.3t64 [5.3.28+dfsg2-7 (testing)] 11) libexpat1 [2.6.2-1 (testing)] 12) libexpat1-dev [2.6.2-1 (testing)] 13) libgssapi-krb5-2 [1.20.1-5+b1 (testing)] 14) libjs-jquery [3.6.1+dfsg+~3.5.14-1 (testing)] 15) libjs-sphinxdoc [7.2.6-6 (testing)] 16) libjs-underscore [1.13.4~dfsg+~1.11.4-3 (testing)] 17) libjsoncpp25 [1.9.5-6+b2 (testing)] 18) libk5crypto3 [1.20.1-5+b1 (testing)] 19) libkeyutils1 [1.6.3-3 (testing)] 20) libkrb5-3 [1.20.1-5+b1 (testing)] 21) libkrb5support0 [1.20.1-5+b1 (testing)] 22) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 23) libnghttp2-14 [1.59.0-1 (testing)] 24) libproc2-0 [2:4.0.4-4 (testing)] 25) libpsl5t64 [0.21.2-1.1 (testing)] 26) libpython3-all-dev [3.11.8-1 (testing)] 27) libpython3-dev [3.11.8-1 (testing)] 28) libpython3-stdlib [3.11.8-1 (testing)] 29) libpython3.11-dev [3.11.9-1 (testing)] 30) libpython3.11-minimal [3.11.9-1 (testing)] 31) libpython3.11-stdlib [3.11.9-1 (testing)] 32) libpython3.11t64 [3.11.9-1 (testing)] 33) libpython3.12-dev [3.12.3-1 (testing)] 34) libpython3.12-minimal [3.12.3-1 (testing)] 35) libpython3.12-stdlib [3.12.3-1 (testing)] 36) libpython3.12t64 [3.12.3-1 (testing)] 37) libreadline8t64 [8.2-4 (testing)] 38) librhash0 [1.4.3-3+b1 (testing)] 39) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 40) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 41) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 42) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 43) libssl3t64 [3.2.1-3 (testing)] 44) libuv1 [1.48.0-1 (testing)] 45) media-types [10.1.0 (testing)] 46) netbase [6.4 (testing)] 47) procps [2:4.0.4-4 (testing)] 48) pybind11-dev [2.11.1-2 (testing)] 49) python3 [3.11.8-1 (testing)] 50) python3-all [3.11.8-1 (testing)] 51) python3-all-dev [3.11.8-1 (testing)] 52) python3-dev [3.11.8-1 (testing)] 53) python3-distutils [3.12.3-1 (testing)] 54) python3-lib2to3 [3.12.3-1 (testing)] 55) python3-minimal [3.11.8-1 (testing)] 56) python3-pkg-resources [68.1.2-2 (testing)] 57) python3-pybind11 [2.11.1-2 (testing)] 58) python3-setuptools [68.1.2-2 (testing)] 59) python3.11 [3.11.9-1 (testing)] 60) python3.11-dev [3.11.9-1 (testing)] 61) python3.11-minimal [3.11.9-1 (testing)] 62) python3.12 [3.12.3-1 (testing)] 63) python3.12-dev [3.12.3-1 (testing)] 64) python3.12-minimal [3.12.3-1 (testing)] 65) readline-common [8.2-4 (testing)] 66) tzdata [2024a-3 (testing)] 67) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdb5.3t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages will be REMOVED: libdb5.3{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix python3-numpy wget 0 packages upgraded, 95 newly installed, 2 to remove and 0 not upgraded. Need to get 67.4 MB of archives. After unpacking 263 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 43 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libuv1 amd64 1.48.0-1 [147 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.28.3-1 [2128 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.28.3-1 [10.5 MB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 88 http://deb.debian.org/debian trixie/main amd64 pybind11-dev all 2.11.1-2 [191 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-pybind11 all 2.11.1-2 [201 kB] Fetched 67.4 MB in 3s (24.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libperl5.38:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. 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Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20042 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking libcom-err2:amd64 (1.47.0-2.4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.20.1-5+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-5+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.20.1-5+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-5+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.20.1-5+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-4+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/phat-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phat_1.6-2_source.changes dpkg-buildpackage: info: source package phat dpkg-buildpackage: info: source version 1.6-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gard Spreemann dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --builddirectory=build dh_auto_clean -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf_clean -O--buildsystem=cmake -O--builddirectory=build dh_clean -O--buildsystem=cmake -O--builddirectory=build dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/phat-1.6/.pybuild/cpython3_3.12_phat/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/phat-1.6/.pybuild/cpython3_3.11_phat/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=cmake --builddirectory=build dh_update_autotools_config -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -O--buildsystem=cmake -O--builddirectory=build dh_auto_configure -O--buildsystem=cmake -O--builddirectory=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test OPENMP_VERSION -- Performing Test OPENMP_VERSION - Success -- Configuring done (3.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: 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--verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/self_test.dir/src/self_test.cpp.o -o self_test make[3]: Leaving directory '/build/reproducible-path/phat-1.6/build' [ 83%] Built target self_test [ 91%] Linking CXX executable phat /usr/bin/cmake -E cmake_link_script CMakeFiles/phat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/phat.dir/src/phat.cpp.o -o phat make[3]: Leaving directory '/build/reproducible-path/phat-1.6/build' [ 91%] Built target phat [100%] Linking CXX executable benchmark /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/benchmark.dir/src/benchmark.cpp.o -o benchmark make[3]: Leaving directory '/build/reproducible-path/phat-1.6/build' [100%] Built target benchmark make[2]: Leaving directory '/build/reproducible-path/phat-1.6/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/phat-1.6/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/phat-1.6/build' dh_auto_test -O--buildsystem=cmake -O--builddirectory=build create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--builddirectory=build dh_prep -O--buildsystem=cmake -O--builddirectory=build dh_auto_install -O--buildsystem=cmake -O--builddirectory=build dh_install -O--buildsystem=cmake -O--builddirectory=build dh_installdocs -O--buildsystem=cmake -O--builddirectory=build dh_installchangelogs -O--buildsystem=cmake -O--builddirectory=build dh_installman -O--buildsystem=cmake -O--builddirectory=build dh_installsystemduser -O--buildsystem=cmake -O--builddirectory=build dh_perl -O--buildsystem=cmake -O--builddirectory=build dh_link -O--buildsystem=cmake -O--builddirectory=build dh_strip_nondeterminism -O--buildsystem=cmake -O--builddirectory=build dh_compress -O--buildsystem=cmake -O--builddirectory=build dh_fixperms -O--buildsystem=cmake -O--builddirectory=build dh_missing -O--buildsystem=cmake -O--builddirectory=build dh_dwz -a -O--buildsystem=cmake -O--builddirectory=build dh_strip -a -O--buildsystem=cmake -O--builddirectory=build dh_makeshlibs -a -O--buildsystem=cmake -O--builddirectory=build dh_shlibdeps -a -O--buildsystem=cmake -O--builddirectory=build dh_installdeb -O--buildsystem=cmake -O--builddirectory=build dh_gencontrol -O--buildsystem=cmake -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package python3-phat: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-phat: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake -O--builddirectory=build dh_builddeb -O--buildsystem=cmake -O--builddirectory=build dpkg-deb: building package 'libphat-dev' in '../libphat-dev_1.6-2_all.deb'. dpkg-deb: building package 'python3-phat' in '../python3-phat_1.6-2_amd64.deb'. dpkg-deb: building package 'phat-utils' in '../phat-utils_1.6-2_amd64.deb'. dpkg-deb: building package 'phat-utils-dbgsym' in '../phat-utils-dbgsym_1.6-2_amd64.deb'. dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/phat-1.6/debian/python3-phat running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying python/phat.py -> /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.12_phat/build running build_ext building '_phat' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/python x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c python/_phat.cpp -o build/temp.linux-x86_64-cpython-312/python/_phat.o -std=c++11 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from include/phat/representations/default_representations.h:23, from include/phat/boundary_matrix.h:22, from include/phat/compute_persistence_pairs.h:22, from python/_phat.cpp:13: include/phat/representations/Pivot_representation.h:75: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 75 | #pragma omp parallel for | include/phat/representations/Pivot_representation.h:96: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 96 | #pragma omp parallel for | include/phat/boundary_matrix.h:215: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 215 | #pragma omp parallel for private( temp_col ) | In file included from include/phat/compute_persistence_pairs.h:23: include/phat/helpers/dualize.h:46: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 46 | #pragma omp parallel for | include/phat/helpers/dualize.h:57: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 57 | #pragma omp parallel for | include/phat/helpers/dualize.h:61: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 61 | #pragma omp parallel for | In file included from python/_phat.cpp:19: include/phat/algorithms/chunk_reduction.h:55: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 55 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/chunk_reduction.h:62: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 62 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/chunk_reduction.h:76: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 76 | #pragma omp parallel for | include/phat/algorithms/chunk_reduction.h:85: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 85 | #pragma omp parallel for schedule( guided, 1 ), private( temp_col ) | include/phat/algorithms/chunk_reduction.h:152: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) | In file included from python/_phat.cpp:20: include/phat/algorithms/spectral_sequence_reduction.h:42: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 42 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/spectral_sequence_reduction.h:52: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 52 | #pragma omp parallel for schedule( guided, 1 ) | In file included from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/class.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:13, from python/_phat.cpp:2: python/_phat.cpp: In function 'PyObject* PyInit__phat()': /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../detail/common.h:428:33: warning: 'PyObject* pybind11_init()' is deprecated: PYBIND11_PLUGIN is deprecated, use PYBIND11_MODULE [-Wdeprecated-declarations] 428 | return pybind11_init(); \ | ~~~~~~~~~~~~~^~ python/_phat.cpp:263:1: note: in expansion of macro 'PYBIND11_PLUGIN' 263 | PYBIND11_PLUGIN(_phat) { | ^~~~~~~~~~~~~~~ /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../detail/common.h:423:22: note: declared here 423 | static PyObject *pybind11_init(); \ | ^~~~~~~~~~~~~ python/_phat.cpp:263:1: note: in expansion of macro 'PYBIND11_PLUGIN' 263 | PYBIND11_PLUGIN(_phat) { | ^~~~~~~~~~~~~~~ python/_phat.cpp: In function 'PyObject* pybind11_init()': python/_phat.cpp:265:97: warning: 'pybind11::module_::module_(const char*, const char*)' is deprecated: Use PYBIND11_MODULE or module_::create_extension_module instead [-Wdeprecated-declarations] 265 | py::module m("_phat", "C++ wrapper for PHAT. Please use the phat module, not the _phat module"); | ^ /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:1159:14: note: declared here 1159 | explicit module_(const char *name, const char *doc = nullptr) { | ^~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/python/_phat.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.12_phat/build/_phat.cpython-312-x86_64-linux-gnu.so running install_lib creating /build/reproducible-path/phat-1.6/debian/python3-phat creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12 creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12/dist-packages copying /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.12_phat/build/phat.py -> /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12/dist-packages copying /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.12_phat/build/_phat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12/dist-packages/phat.py to phat.cpython-312.pyc running install_egg_info running egg_info creating python/phat.egg-info writing python/phat.egg-info/PKG-INFO writing dependency_links to python/phat.egg-info/dependency_links.txt writing requirements to python/phat.egg-info/requires.txt writing top-level names to python/phat.egg-info/top_level.txt writing manifest file 'python/phat.egg-info/SOURCES.txt' reading manifest file 'python/phat.egg-info/SOURCES.txt' adding license file 'COPYING' adding license file 'COPYING.LESSER' writing manifest file 'python/phat.egg-info/SOURCES.txt' Copying python/phat.egg-info to /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.12/dist-packages/phat-1.6.0.post2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/phat-1.6/debian/python3-phat running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying python/phat.py -> /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.11_phat/build running build_ext building '_phat' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/python x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c python/_phat.cpp -o build/temp.linux-x86_64-cpython-311/python/_phat.o -std=c++11 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from include/phat/representations/default_representations.h:23, from include/phat/boundary_matrix.h:22, from include/phat/compute_persistence_pairs.h:22, from python/_phat.cpp:13: include/phat/representations/Pivot_representation.h:75: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 75 | #pragma omp parallel for | include/phat/representations/Pivot_representation.h:96: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 96 | #pragma omp parallel for | include/phat/boundary_matrix.h:215: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 215 | #pragma omp parallel for private( temp_col ) | In file included from include/phat/compute_persistence_pairs.h:23: include/phat/helpers/dualize.h:46: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 46 | #pragma omp parallel for | include/phat/helpers/dualize.h:57: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 57 | #pragma omp parallel for | include/phat/helpers/dualize.h:61: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 61 | #pragma omp parallel for | In file included from python/_phat.cpp:19: include/phat/algorithms/chunk_reduction.h:55: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 55 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/chunk_reduction.h:62: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 62 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/chunk_reduction.h:76: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 76 | #pragma omp parallel for | include/phat/algorithms/chunk_reduction.h:85: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 85 | #pragma omp parallel for schedule( guided, 1 ), private( temp_col ) | include/phat/algorithms/chunk_reduction.h:152: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) | In file included from python/_phat.cpp:20: include/phat/algorithms/spectral_sequence_reduction.h:42: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 42 | #pragma omp parallel for schedule( guided, 1 ) | include/phat/algorithms/spectral_sequence_reduction.h:52: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 52 | #pragma omp parallel for schedule( guided, 1 ) | In file included from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/class.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:13, from python/_phat.cpp:2: python/_phat.cpp: In function 'PyObject* PyInit__phat()': /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../detail/common.h:428:33: warning: 'PyObject* pybind11_init()' is deprecated: PYBIND11_PLUGIN is deprecated, use PYBIND11_MODULE [-Wdeprecated-declarations] 428 | return pybind11_init(); \ | ~~~~~~~~~~~~~^~ python/_phat.cpp:263:1: note: in expansion of macro 'PYBIND11_PLUGIN' 263 | PYBIND11_PLUGIN(_phat) { | ^~~~~~~~~~~~~~~ /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/../detail/common.h:423:22: note: declared here 423 | static PyObject *pybind11_init(); \ | ^~~~~~~~~~~~~ python/_phat.cpp:263:1: note: in expansion of macro 'PYBIND11_PLUGIN' 263 | PYBIND11_PLUGIN(_phat) { | ^~~~~~~~~~~~~~~ python/_phat.cpp: In function 'PyObject* pybind11_init()': python/_phat.cpp:265:97: warning: 'pybind11::module_::module_(const char*, const char*)' is deprecated: Use PYBIND11_MODULE or module_::create_extension_module instead [-Wdeprecated-declarations] 265 | py::module m("_phat", "C++ wrapper for PHAT. Please use the phat module, not the _phat module"); | ^ /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:1159:14: note: declared here 1159 | explicit module_(const char *name, const char *doc = nullptr) { | ^~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phat-1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/python/_phat.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.11_phat/build/_phat.cpython-311-x86_64-linux-gnu.so running install_lib creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11 creating /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11/dist-packages copying /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.11_phat/build/phat.py -> /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11/dist-packages copying /build/reproducible-path/phat-1.6/.pybuild/cpython3_3.11_phat/build/_phat.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11/dist-packages byte-compiling /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11/dist-packages/phat.py to phat.cpython-311.pyc running install_egg_info running egg_info writing python/phat.egg-info/PKG-INFO writing dependency_links to python/phat.egg-info/dependency_links.txt writing requirements to python/phat.egg-info/requires.txt writing top-level names to python/phat.egg-info/top_level.txt reading manifest file 'python/phat.egg-info/SOURCES.txt' adding license file 'COPYING' adding license file 'COPYING.LESSER' writing manifest file 'python/phat.egg-info/SOURCES.txt' Copying python/phat.egg-info to /build/reproducible-path/phat-1.6/debian/python3-phat/usr/lib/python3.11/dist-packages/phat-1.6.0.post2.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-phat' in '../python3-phat_1.6-2_amd64.deb'. dpkg-deb: building package 'phat-utils-dbgsym' in '../phat-utils-dbgsym_1.6-2_amd64.deb'. dpkg-deb: building package 'libphat-dev' in '../libphat-dev_1.6-2_all.deb'. dpkg-deb: building package 'phat-utils' in '../phat-utils_1.6-2_amd64.deb'. dpkg-deb: building package 'python3-phat-dbgsym' in '../python3-phat-dbgsym_1.6-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../phat_1.6-2_amd64.buildinfo dpkg-genchanges --build=binary -O../phat_1.6-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1368002 and its subdirectories I: Current time: Sun Jun 1 06:54:48 -12 2025 I: pbuilder-time-stamp: 1748804088 Mon Apr 29 12:31:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Apr 29 12:31:49 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Apr 29 12:40:23 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Apr 29 12:40:23 UTC 2024 I: phat_1.6-2_amd64.changes: Format: 1.8 Date: Sat, 23 Jan 2021 18:25:03 +0100 Source: phat Binary: libphat-dev phat-utils phat-utils-dbgsym python3-phat python3-phat-dbgsym Architecture: all amd64 Version: 1.6-2 Distribution: unstable Urgency: medium Maintainer: Gard Spreemann Changed-By: Gard Spreemann Description: libphat-dev - C++ library for boundary matrix reductions over Z/2Z phat-utils - Utilities from the PHAT library python3-phat - Python 3 interface for the PHAT library Changes: phat (1.6-2) unstable; urgency=medium . * Start d/upstream/metadata file. * Standards-version 4.5.1. No changes needed. Checksums-Sha1: 1135f6f97094b21f03581eb00e5a746bf40acc9b 16232 libphat-dev_1.6-2_all.deb c6804f07b5fb2242dfc337dcc4100941f8c74db7 1183072 phat-utils-dbgsym_1.6-2_amd64.deb 813ef1ee4c6e86a2c8e00f00afff7ba7ca9f2b05 111980 phat-utils_1.6-2_amd64.deb 182549b8a1178d1ad9a78263078083e5f7d03128 8156 phat_1.6-2_amd64.buildinfo 1e6bea32f8a8a7762e8874c61b0ea2f2370190c1 8131792 python3-phat-dbgsym_1.6-2_amd64.deb 67f70c34b1cc865539573912beef75a5dae2e690 358852 python3-phat_1.6-2_amd64.deb Checksums-Sha256: 688c310698938b4784aa4e32f2a3abbf1b50d688b3bd9c910712466ce0460abd 16232 libphat-dev_1.6-2_all.deb b281f8f7f043187efa52b9de0e05652211dec5a2e7819bb4c9f3ed12565f4099 1183072 phat-utils-dbgsym_1.6-2_amd64.deb da0d1f894a9235f928d37d3f9f78438d78ff5ae500847089417ce075f204a09c 111980 phat-utils_1.6-2_amd64.deb 2bdf50b6e5ab02bf8068f6a030c204ea7be35bd47d4d675bd4d372da3170cfba 8156 phat_1.6-2_amd64.buildinfo c75598cfda93cb1bdd32a93a713f283fb4b5ee1e2bd4878d54e71ae16ddfc8f9 8131792 python3-phat-dbgsym_1.6-2_amd64.deb 402e4fbda2037acb901f4c383fbd09e93ce022731691b2b78d484d431c7ae4db 358852 python3-phat_1.6-2_amd64.deb Files: 7d9b51dd202614f86e700c18e438a7df 16232 libdevel optional libphat-dev_1.6-2_all.deb d3cb9216a638240a1f4e9d24cdb3f423 1183072 debug optional phat-utils-dbgsym_1.6-2_amd64.deb 15ba1f5475afdff588e0cb9cf10500e2 111980 math optional phat-utils_1.6-2_amd64.deb 55303bacbd7d965205aea2b3f78b13a2 8156 math optional phat_1.6-2_amd64.buildinfo 6f0b00c73d525b83057b200b04f724b6 8131792 debug optional python3-phat-dbgsym_1.6-2_amd64.deb 6d704f9d8b4476f5cddc405b336a1687 358852 python optional python3-phat_1.6-2_amd64.deb Mon Apr 29 12:40:24 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_30-7271.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/phat_1.6-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/phat_1.6-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/phat_1.6-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/b1/phat_1.6-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.dH1zSnvn/b2/phat_1.6-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.426s) 0.426s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.119s) 0.119s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 734ms CPU time consumed: 735ms Mon Apr 29 12:40:26 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 29 12:40:26 UTC 2024 I: phat from trixie built successfully and reproducibly on amd64. Mon Apr 29 12:40:27 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 29 12:40:27 UTC 2024 I: Submitting 12K b1/phat_1.6-2_amd64.buildinfo.asc Mon Apr 29 12:40:29 UTC 2024 I: Submitting 12K b2/phat_1.6-2_amd64.buildinfo.asc Mon Apr 29 12:40:31 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 29 12:40:31 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 29 12:40:31 UTC 2024 I: Removing signed phat_1.6-2_amd64.buildinfo.asc files: removed './b1/phat_1.6-2_amd64.buildinfo.asc' removed './b2/phat_1.6-2_amd64.buildinfo.asc'