Sat May 4 23:00:47 UTC 2024 I: starting to build parallel-fastq-dump/trixie/amd64 on jenkins on '2024-05-04 23:00' Sat May 4 23:00:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/19215/console.log Sat May 4 23:00:47 UTC 2024 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3 --2024-05-04 23:00:48-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’ 0K .. 100% 290M=0s 2024-05-04 23:00:48 (290 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141] Sat May 4 23:00:48 UTC 2024 I: parallel-fastq-dump_0.6.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: any Version: 0.6.7-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvalieris/parallel-fastq-dump Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/parallel-fastq-dump Vcs-Git: https://salsa.debian.org/med-team/parallel-fastq-dump.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit Package-List: parallel-fastq-dump deb science optional arch=any Checksums-Sha1: 2f84683b686881fe817aa7fbd1a0b2358bfe4508 4208 parallel-fastq-dump_0.6.7.orig.tar.gz f3baa817ee82ca672dda9cd5ad5df4e404b90962 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Checksums-Sha256: cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de 4208 parallel-fastq-dump_0.6.7.orig.tar.gz b9c66d93be3feaf1ae18f9f1b0389c5daa188ff80272b3eb6598f3b6642f3e94 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Files: 2be46eb5b8865bc837bd279d892b29a9 4208 parallel-fastq-dump_0.6.7.orig.tar.gz e2a2e4479401189dde4e81f8792be58d 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmJDUlASHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxqIQQAIeI2pf5pHv7d8I20+x1zpMtxNiPIgqd /ALBNe7PioXeZC3fLnFEyEuE+/R2DndrboxE+fi1sMyOhS3EX8tNV8o5mQhxng7l KJE4xRlYAq+HYPgJ2ApCHU5UXS14Uzrf0PPbgl3vOzexr+qI2Rr0NmJ/38NtjMsM B5kVQ/KqzvVqxQUZ7Ii28j4ELzl/JSiBOdKwvQs+gxBVblDg7/GHy+sWJSH1L19n UBVNgnEoElfPv8SzpvaqwGH7iACT7pCqNEg7V5nP+f+WQVkEB+ZY63F8bJP0p9f2 Yc84J8gc06jzktPG6ia0niYVgVAa7YdtofKm0SG/QWAxSY1sUgJM3g+NzW3vmLZo 5aH6Meq5GzQ1GD/JpNlx8AM2l1wBCYrpY3YKgFSfQEH1Ia6/HZ2yE6xVjrCg8TTU efyTT1L/XGhmaaaHRdOdhdxb3g1YY5eBAO6qsNwG3umChMipJmGyh2i+MKaUesE2 3e7vz0d96o1CHPXj9O4NOHYCf2Wai8i1yXtQcvSpnUhh/YWPEdeDefLaPcAv6v0z M5OLrO2Ai96KYUK6n+Bn81xUXdDKAWSJsleEiJPl5n1thouFyKVq3CWPpf7nim3A x+jo9kQO20rEQALV7JL8nrJZqzkKXvYL5fZBuJfII0tFwe/tszqcO5Xbz0p0xY7X I7NFFxRKMAB2 =V+so -----END PGP SIGNATURE----- Sat May 4 23:00:48 UTC 2024 I: Checking whether the package is not for us Sat May 4 23:00:48 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat May 4 23:00:48 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat May 4 23:01:32 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 6 17:23:51 -12 2025 I: pbuilder-time-stamp: 1749273831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parallel-fastq-dump_0.6.7-3.dsc] I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz] I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 29 18:39:12 2022 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: no acceptable signature found dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7 dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/812243/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='3f7521e14d7e482c847bbec6476b046e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='812243' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/pbuilderrc_dIgF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 14:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/812243/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhdf5-103-1{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libncbi-vdb3{a} libncbi-wvdb3{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libre2-10{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sra-toolkit{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx med-config publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 38.9 MB of archives. After unpacking 138 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 66 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2+b1 [1049 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libncbi-wvdb3 amd64 3.0.2+dfsg-2+b1 [1078 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libre2-10 amd64 20230301-3+b1 [188 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 sra-toolkit amd64 3.0.3+dfsg-6 [6772 kB] Fetched 38.9 MB in 0s (116 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20011 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/parallel-fastq-dump-0.6.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parallel-fastq-dump_0.6.7-3_source.changes dpkg-buildpackage: info: source package parallel-fastq-dump dpkg-buildpackage: info: source version 0.6.7-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/parallel-fastq-dump-0.6.7/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_scripts creating build creating build/scripts-3.11 copying and adjusting parallel-fastq-dump -> build/scripts-3.11 changing mode of build/scripts-3.11/parallel-fastq-dump from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/parallel-fastq-dump-0.6.7/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/parallel-fastq-dump/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_scripts running install_egg_info running egg_info creating parallel_fastq_dump.egg-info writing parallel_fastq_dump.egg-info/PKG-INFO writing dependency_links to parallel_fastq_dump.egg-info/dependency_links.txt writing top-level names to parallel_fastq_dump.egg-info/top_level.txt writing manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' reading manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'parallel_fastq_dump.egg-info/SOURCES.txt' Copying parallel_fastq_dump.egg-info to /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/lib/python3.11/dist-packages/parallel_fastq_dump-0.6.7.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin copying build/scripts-3.11/parallel-fastq-dump -> /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin changing mode of /build/reproducible-path/parallel-fastq-dump-0.6.7/debian/parallel-fastq-dump/usr/bin/parallel-fastq-dump to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'parallel-fastq-dump' in '../parallel-fastq-dump_0.6.7-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../parallel-fastq-dump_0.6.7-3_amd64.buildinfo dpkg-genchanges --build=binary -O../parallel-fastq-dump_0.6.7-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/812243 and its subdirectories I: Current time: Fri Jun 6 17:24:32 -12 2025 I: pbuilder-time-stamp: 1749273872 Sat May 4 23:01:33 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat May 4 23:01:33 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat May 4 23:04:12 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat May 4 23:04:12 UTC 2024 I: parallel-fastq-dump_0.6.7-3_amd64.changes: Format: 1.8 Date: Tue, 29 Mar 2022 18:31:28 +0000 Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: amd64 Version: 0.6.7-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: parallel-fastq-dump - parallel fastq-dump wrapper Changes: parallel-fastq-dump (0.6.7-3) unstable; urgency=medium . * Team Upload. * add autopkgtest Checksums-Sha1: e9da09a775a9de033bb05e64e80b3139b36e911a 6529 parallel-fastq-dump_0.6.7-3_amd64.buildinfo d01c3b89d713f024a73605f1fa45bd9ba811d811 5600 parallel-fastq-dump_0.6.7-3_amd64.deb Checksums-Sha256: f7f8782e3567e6972275f50ad8d3b50399b9dee2680a64af434b00102e9a8c0d 6529 parallel-fastq-dump_0.6.7-3_amd64.buildinfo f1b28f43b88786b4fc35c0b15b26bf1af5cd0686d73dbfce006abd7239df7957 5600 parallel-fastq-dump_0.6.7-3_amd64.deb Files: e92c24cb73b9e34f2b80ebf51112beda 6529 science optional parallel-fastq-dump_0.6.7-3_amd64.buildinfo c0851aa0e87211f4afd64962ce9c01a5 5600 science optional parallel-fastq-dump_0.6.7-3_amd64.deb Sat May 4 23:04:13 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_28-19215.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/parallel-fastq-dump_0.6.7-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/parallel-fastq-dump_0.6.7-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/parallel-fastq-dump_0.6.7-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/b1/parallel-fastq-dump_0.6.7-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.sUJBlRdQ/b2/parallel-fastq-dump_0.6.7-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.390s) 0.390s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 727ms CPU time consumed: 727ms Sat May 4 23:04:15 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 4 23:04:15 UTC 2024 I: parallel-fastq-dump from trixie built successfully and reproducibly on amd64. Sat May 4 23:04:16 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 4 23:04:16 UTC 2024 I: Submitting 8.0K b1/parallel-fastq-dump_0.6.7-3_amd64.buildinfo.asc Sat May 4 23:04:17 UTC 2024 I: Submitting 8.0K b2/parallel-fastq-dump_0.6.7-3_amd64.buildinfo.asc Sat May 4 23:04:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 4 23:04:18 UTC 2024 I: Done submitting .buildinfo files. Sat May 4 23:04:18 UTC 2024 I: Removing signed parallel-fastq-dump_0.6.7-3_amd64.buildinfo.asc files: removed './b1/parallel-fastq-dump_0.6.7-3_amd64.buildinfo.asc' removed './b2/parallel-fastq-dump_0.6.7-3_amd64.buildinfo.asc'