Thu May 9 23:10:19 UTC 2024 I: starting to build optimir/trixie/amd64 on jenkins on '2024-05-09 23:10' Thu May 9 23:10:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/7085/console.log Thu May 9 23:10:19 UTC 2024 I: Downloading source for trixie/optimir=1.2-1 --2024-05-09 23:10:19-- http://deb.debian.org/debian/pool/main/o/optimir/optimir_1.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1984 (1.9K) [text/prs.lines.tag] Saving to: ‘optimir_1.2-1.dsc’ 0K . 100% 198M=0s 2024-05-09 23:10:19 (198 MB/s) - ‘optimir_1.2-1.dsc’ saved [1984/1984] Thu May 9 23:10:19 UTC 2024 I: optimir_1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: optimir Binary: optimir Architecture: all Version: 1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/FlorianThibord/OptimiR Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/optimir Vcs-Git: https://salsa.debian.org/med-team/optimir.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools Package-List: optimir deb science optional arch=all Checksums-Sha1: f5b0b31d4572ef7ae13df5720e4717251a7f7f16 1748155 optimir_1.2.orig.tar.gz fa713b693d170f487d25925182ad55d9d22f51b4 3476 optimir_1.2-1.debian.tar.xz Checksums-Sha256: de67c81c03ed3cb9faaba93388867faa8de57dfcada06544e6e762785545cb9b 1748155 optimir_1.2.orig.tar.gz 3bbcceb66d45a9f72d504791f4c162d6033ea48a9ded5a0acf40dfbac4af8340 3476 optimir_1.2-1.debian.tar.xz Files: 617473e1a1e467b85451c57c1875a86a 1748155 optimir_1.2.orig.tar.gz ae99593396619c23b7f71334d74b0765 3476 optimir_1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAmI0nSoSHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9UapwP/2cFN5Iq+LJ7nX0BWz8F6FfqvXSVZ31G PiF6bQ5Q98cvbi1UQgEa1N0HenWCC09HjM5+MVln4kgcgoKF17yDqaHrmPFe7ic5 Trhny37b4039f3yBaHnYzvviq2XKmUnyg/b0vAp9uz0prK8TnBZhe8j5ftbgox4r zLzpBJ2oriq0e5U6eAn2Gfuh4Qw+kxCa2St+SGiDhtpQ161aUc3hdueh/gio0qIm 45Yq9JTRQesF0/4k3XcFSB5PhZFqn9sEnfkDF1b/4hVrtf3NyfYJcxtp7LI+IJM7 5QRSLOmdEOFfTVvlXCYkoPi6ePlVPfeaq6ZPSpjKtv10AKlif9eckmbxH0wgGImo 3prd+K/A7nR4l0akWBuvgxuFupIE4a19N3citPssKwVQxxTmm8jOKNU2Z2uZKuUU ziGDdPeIrGquYT1rKnVUY9X4z73O/OE2HmX7783H/lzkq8IBwjE/D0dSpZIrvYFI mgLun0ce81dOvkbKDtc4JdPJswl+THgIp+7miVxOs66byrUEVApPoDaUqw8dRImD Sw1pOIx8aItTTpcuebIXF7yvwMqAYeF7/xWd/RtRLx6k4XFl08imckPIz3kFR/HZ yANF1sAtOeviIpBB8MMoufD/vEhJKmVEjvSjAryejGZXgc9xBNy5D0Qk9htnpMXQ DCEa2qTyRVEj =T9wn -----END PGP SIGNATURE----- Thu May 9 23:10:19 UTC 2024 I: Checking whether the package is not for us Thu May 9 23:10:19 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu May 9 23:10:19 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu May 9 23:11:41 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 11:10:21 -12 2024 I: pbuilder-time-stamp: 1715296221 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [optimir_1.2-1.dsc] I: copying [./optimir_1.2.orig.tar.gz] I: copying [./optimir_1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Mar 18 14:54:34 2022 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./optimir_1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting optimir in optimir-1.2 dpkg-source: info: unpacking optimir_1.2.orig.tar.gz dpkg-source: info: unpacking optimir_1.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3395821/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='af02ed5246ab4a408b5cc9f242e38163' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3395821' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/pbuilderrc_TqfV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/b1 --logfile b1/build.log optimir_1.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3395821/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB of archives. After unpacking 103 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Fetched 25.9 MB in 0s (67.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20015 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 9 23:11:10 UTC 2024. Universal Time is now: Thu May 9 23:11:10 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../optimir_1.2-1_source.changes dpkg-buildpackage: info: source package optimir dpkg-buildpackage: info: source version 1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir copying optimir/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir copying optimir/command_line.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs copying optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs running egg_info creating OptimiR.egg-info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt writing manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/optimir/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/optimir-1.2/debian/optimir running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11 creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/command_line.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__pycache__ creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.11_optimir/build/optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/command_line.py to command_line.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/mapping.py to mapping.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/post_process.py to post_process.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/scoring.py to scoring.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/essentials.py to essentials.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/get_counts.py to get_counts.cpython-311.pyc /usr/lib/python3.11/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/annotate.py to annotate.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/consistency.py to consistency.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/process.py to process.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/summarize.py to summarize.cpython-311.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/optimir/libs/pre_process.py to pre_process.cpython-311.pyc running install_egg_info Copying OptimiR.egg-info to /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.11/dist-packages/OptimiR-1.0.egg-info Skipping SOURCES.txt running install_scripts Installing optimir script to /build/reproducible-path/optimir-1.2/debian/optimir/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/optimir-1.2' dh_installman debian/optimir.1 make[1]: Leaving directory '/build/reproducible-path/optimir-1.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package optimir: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'optimir' in '../optimir_1.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../optimir_1.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../optimir_1.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3395821 and its subdirectories I: Current time: Thu May 9 11:11:40 -12 2024 I: pbuilder-time-stamp: 1715296300 Thu May 9 23:11:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu May 9 23:11:42 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu May 9 23:12:57 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu May 9 23:12:58 UTC 2024 I: optimir_1.2-1_amd64.changes: Format: 1.8 Date: Fri, 18 Mar 2022 15:43:54 +0100 Source: optimir Binary: optimir Architecture: all Version: 1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: optimir - Integrating genetic variations in miRNA alignment Changes: optimir (1.2-1) unstable; urgency=medium . * New upstream version * Drop patch applied upstream Checksums-Sha1: 495ebc93bc070085eef0af768b26db4df215de45 1028652 optimir_1.2-1_all.deb 04db98ce64df771e060f8e8626e7f1a77f3380cb 5433 optimir_1.2-1_amd64.buildinfo Checksums-Sha256: d163cf5fffcdb155dbad207488c52052f73bbe7a876e90e799378589625d7186 1028652 optimir_1.2-1_all.deb 23d61fcfa529ace458166bbda59c4363229272014dfc2dafdd789ce36693c964 5433 optimir_1.2-1_amd64.buildinfo Files: a96b419a9f9afbab53944811c9a71c5e 1028652 science optional optimir_1.2-1_all.deb 02fc8c643fcc31e23c884f5d2226d13f 5433 science optional optimir_1.2-1_amd64.buildinfo Thu May 9 23:12:59 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_13-7085.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/optimir_1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/optimir_1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/optimir_1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/b1/optimir_1.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5DfdsVkH/b2/optimir_1.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.422s) 0.421s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 760ms CPU time consumed: 759ms Thu May 9 23:13:00 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 23:13:00 UTC 2024 I: optimir from trixie built successfully and reproducibly on amd64. Thu May 9 23:13:02 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 23:13:02 UTC 2024 I: Submitting 8.0K b1/optimir_1.2-1_amd64.buildinfo.asc Thu May 9 23:13:02 UTC 2024 I: Submitting 8.0K b2/optimir_1.2-1_amd64.buildinfo.asc Thu May 9 23:13:03 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 23:13:03 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 23:13:03 UTC 2024 I: Removing signed optimir_1.2-1_amd64.buildinfo.asc files: removed './b1/optimir_1.2-1_amd64.buildinfo.asc' removed './b2/optimir_1.2-1_amd64.buildinfo.asc'