Sun Feb 23 18:37:44 UTC 2025  I: starting to build obitools/trixie/amd64 on jenkins on '2025-02-23 18:37'
Sun Feb 23 18:37:44 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_36/49325/console.log
Sun Feb 23 18:37:44 UTC 2025  I: Downloading source for trixie/obitools=3.0.1~b26+dfsg-4
--2025-02-23 18:37:44--  http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-4.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2186 (2.1K) [text/prs.lines.tag]
Saving to: ‘obitools_3.0.1~b26+dfsg-4.dsc’

     0K ..                                                    100%  355M=0s

2025-02-23 18:37:44 (355 MB/s) - ‘obitools_3.0.1~b26+dfsg-4.dsc’ saved [2186/2186]

Sun Feb 23 18:37:44 UTC 2025  I: obitools_3.0.1~b26+dfsg-4.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: obitools
Binary: obitools
Architecture: any
Version: 3.0.1~b26+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://metabarcoding.org/obitools3
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/obitools
Vcs-Git: https://salsa.debian.org/med-team/obitools.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: less
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake
Package-List:
 obitools deb science optional arch=any
Checksums-Sha1:
 79040b3e48957ae1669e2b094fb3fc56a8d0db7b 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz
 b78f8845599499f2126fb49779d1163b3eb53d16 3556224 obitools_3.0.1~b26+dfsg-4.debian.tar.xz
Checksums-Sha256:
 6f067e22b76e4489288f7a3d13027391ecba5719de324c2ca58ec4542bc60e91 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz
 ca07328cd1fb0d7b6432226b9cd87ffcd16b361946e43b404c7b8e0b3080beb8 3556224 obitools_3.0.1~b26+dfsg-4.debian.tar.xz
Files:
 974e65eaa6d1a2f51a7f5594b6987349 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz
 e2a442b2e5627a7eaf622dfc15fa6de3 3556224 obitools_3.0.1~b26+dfsg-4.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=f9vk
-----END PGP SIGNATURE-----
Sun Feb 23 18:37:45 UTC 2025  I: Checking whether the package is not for us
Sun Feb 23 18:37:45 UTC 2025  I: Starting 1st build on remote node infom02-amd64.debian.net.
Sun Feb 23 18:37:45 UTC 2025  I: Preparing to do remote build '1' on infom02-amd64.debian.net.
Sun Feb 23 18:46:39 UTC 2025  I: Deleting $TMPDIR on infom02-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sat Mar 28 13:00:47 -12 2026
I: pbuilder-time-stamp: 1774746047
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [obitools_3.0.1~b26+dfsg-4.dsc]
I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz]
I: copying [./obitools_3.0.1~b26+dfsg-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-4.dsc: unsupported subcommand
dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg
dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz
dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying cmake_debian_options
dpkg-source: info: applying no_cython_in_binary_package.patch
dpkg-source: info: applying any_arch
dpkg-source: info: applying no-rpath
dpkg-source: info: applying python3.12
dpkg-source: info: applying python3.13
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/653172/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='a3bd1d8779a34028abb00fc17c84a25e'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='653172'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/pbuilderrc_CdvK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-4.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom02-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/653172/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19805 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-dev:native.
 pbuilder-satisfydepends-dummy depends on libpython3-dev; however:
  Package libpython3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cython3; however:
  Package cython3 is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 
0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded.
Need to get 60.8 MB of archives. After unpacking 235 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 41 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-2 [3159 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 68 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB]
Get: 91 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB]
Fetched 60.8 MB in 2s (27.1 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:amd64.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19805 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking python3.13-minimal (3.13.2-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.2-1) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20139 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025a-2_all.deb ...
Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ...
Unpacking python3.13 (3.13.2-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21149 files and directories currently installed.)
Preparing to unpack .../00-python3_3.13.1-2_amd64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../01-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../02-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../07-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../09-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../10-bsdextrautils_2.40.4-3_amd64.deb ...
Unpacking bsdextrautils (2.40.4-3) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../12-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../13-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../14-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../16-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../17-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../18-cmake-data_3.31.5-2_all.deb ...
Unpacking cmake-data (3.31.5-2) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../19-libicu72_72.1-6_amd64.deb ...
Unpacking libicu72:amd64 (72.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../20-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libarchive13t64:amd64.
Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_amd64.deb ...
Unpacking libarchive13t64:amd64 (3.7.4-1.1) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b6) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../23-libkrb5support0_1.21.3-4_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-4) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../24-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../25-libk5crypto3_1.21.3-4_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../26-libkeyutils1_1.6.3-4_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../27-libkrb5-3_1.21.3-4_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-4_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../29-libunistring5_1.3-1_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-1) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../30-libidn2-0_2.3.7-2+b1_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.7-2+b1) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../32-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../33-libldap2_2.6.9+dfsg-1_amd64.deb ...
Unpacking libldap2:amd64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../34-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../35-libnghttp3-9_1.6.0-2_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.6.0-2) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../36-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../39-libgnutls30t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.9-2) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../42-libcurl4t64_8.12.1-2_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.12.1-2) ...
Selecting previously unselected package libjsoncpp26:amd64.
Preparing to unpack .../43-libjsoncpp26_1.9.6-3_amd64.deb ...
Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
Selecting previously unselected package librhash1:amd64.
Preparing to unpack .../44-librhash1_1.4.5-1_amd64.deb ...
Unpacking librhash1:amd64 (1.4.5-1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../45-libuv1t64_1.50.0-2_amd64.deb ...
Unpacking libuv1t64:amd64 (1.50.0-2) ...
Selecting previously unselected package cmake.
Preparing to unpack .../46-cmake_3.31.5-2_amd64.deb ...
Unpacking cmake (3.31.5-2) ...
Selecting previously unselected package cython3.
Preparing to unpack .../47-cython3_3.0.11+dfsg-2_amd64.deb ...
Unpacking cython3 (3.0.11+dfsg-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../48-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../49-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../50-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../53-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../54-libelf1t64_0.192-4_amd64.deb ...
Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../55-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../56-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../59-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package python3-autocommand.
Preparing to unpack .../60-python3-autocommand_2.2.2-3_all.deb ...
Unpacking python3-autocommand (2.2.2-3) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../61-python3-more-itertools_10.6.0-1_all.deb ...
Unpacking python3-more-itertools (10.6.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../62-python3-typing-extensions_4.12.2-2_all.deb ...
Unpacking python3-typing-extensions (4.12.2-2) ...
Selecting previously unselected package python3-typeguard.
Preparing to unpack .../63-python3-typeguard_4.4.1-1_all.deb ...
Unpacking python3-typeguard (4.4.1-1) ...
Selecting previously unselected package python3-inflect.
Preparing to unpack .../64-python3-inflect_7.3.1-2_all.deb ...
Unpacking python3-inflect (7.3.1-2) ...
Selecting previously unselected package python3-jaraco.context.
Preparing to unpack .../65-python3-jaraco.context_6.0.0-1_all.deb ...
Unpacking python3-jaraco.context (6.0.0-1) ...
Selecting previously unselected package python3-jaraco.functools.
Preparing to unpack .../66-python3-jaraco.functools_4.1.0-1_all.deb ...
Unpacking python3-jaraco.functools (4.1.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../67-python3-pkg-resources_75.6.0-1_all.deb ...
Unpacking python3-pkg-resources (75.6.0-1) ...
Selecting previously unselected package python3-jaraco.text.
Preparing to unpack .../68-python3-jaraco.text_4.0.0-1_all.deb ...
Unpacking python3-jaraco.text (4.0.0-1) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../69-python3-zipp_3.21.0-1_all.deb ...
Unpacking python3-zipp (3.21.0-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../70-python3-setuptools_75.6.0-1_all.deb ...
Unpacking python3-setuptools (75.6.0-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../71-dh-python_6.20250108_all.deb ...
Unpacking dh-python (6.20250108) ...
Selecting previously unselected package libexpat1-dev:amd64.
Preparing to unpack .../72-libexpat1-dev_2.6.4-1_amd64.deb ...
Unpacking libexpat1-dev:amd64 (2.6.4-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../73-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../74-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../75-libjs-sphinxdoc_8.1.3-4_all.deb ...
Unpacking libjs-sphinxdoc (8.1.3-4) ...
Selecting previously unselected package libpython3.13:amd64.
Preparing to unpack .../76-libpython3.13_3.13.2-1_amd64.deb ...
Unpacking libpython3.13:amd64 (3.13.2-1) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../77-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package libpython3.13-dev:amd64.
Preparing to unpack .../78-libpython3.13-dev_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-dev:amd64 (3.13.2-1) ...
Selecting previously unselected package libpython3-dev:amd64.
Preparing to unpack .../79-libpython3-dev_3.13.1-2_amd64.deb ...
Unpacking libpython3-dev:amd64 (3.13.1-2) ...
Selecting previously unselected package python3.13-dev.
Preparing to unpack .../80-python3.13-dev_3.13.2-1_amd64.deb ...
Unpacking python3.13-dev (3.13.2-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../81-python3-dev_3.13.1-2_amd64.deb ...
Unpacking python3-dev (3.13.1-2) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-3) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b6) ...
Setting up libuv1t64:amd64 (1.50.0-2) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up tzdata (2025a-2) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sun Mar 29 01:02:02 UTC 2026.
Universal Time is now:  Sun Mar 29 01:02:02 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up autotools-dev (20220109.1) ...
Setting up libexpat1-dev:amd64 (2.6.4-1) ...
Setting up libjsoncpp26:amd64 (1.9.6-3) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libunistring5:amd64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:amd64 (1.6.0-2) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-7) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up netbase (6.4) ...
Setting up cmake-data (3.31.5-2) ...
Setting up librhash1:amd64 (1.4.5-1) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libldap2:amd64 (2.6.9+dfsg-1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up libidn2-0:amd64 (2.3.7-2+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up libjs-sphinxdoc (8.1.3-4) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up libarchive13t64:amd64 (3.7.4-1.1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ...
Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up libpython3.13:amd64 (3.13.2-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up python3.13 (3.13.2-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libpython3.13-dev:amd64 (3.13.2-1) ...
Setting up cython3 (3.0.11+dfsg-2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up libpython3-dev:amd64 (3.13.1-2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libcurl4t64:amd64 (8.12.1-2) ...
Setting up python3.13-dev (3.13.2-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up debhelper (13.24.1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.13.1-2) ...
Setting up cmake (3.31.5-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up dh-python (6.20250108) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../obitools_3.0.1~b26+dfsg-4_source.changes
dpkg-buildpackage: info: source package obitools
dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Stuart Prescott <stuart@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean  --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
# skip it
make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
   dh_autoreconf_clean -O--buildsystem=pybuild
   debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
dh_clean
rm -rf build
rm -f doc/sphinx/build_dir.txt
rm -rf src/OBITools.egg-info
make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
 debian/rules binary
dh binary  --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
Compiling python/obitools3/utils.pyx because it changed.
Compiling python/obitools3/libalign/_qsassemble.pyx because it changed.
Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed.
Compiling python/obitools3/libalign/_freeendgap.pyx because it changed.
Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed.
Compiling python/obitools3/libalign/_nws.pyx because it changed.
Compiling python/obitools3/libalign/shifted_ali.pyx because it changed.
Compiling python/obitools3/libalign/_assemble.pyx because it changed.
Compiling python/obitools3/libalign/apat_pattern.pyx because it changed.
Compiling python/obitools3/libalign/_solexapairend.pyx because it changed.
Compiling python/obitools3/libalign/_rassemble.pyx because it changed.
Compiling python/obitools3/libalign/_dynamic.pyx because it changed.
Compiling python/obitools3/format/fasta.pyx because it changed.
Compiling python/obitools3/format/header.pyx because it changed.
Compiling python/obitools3/format/fastq.pyx because it changed.
Compiling python/obitools3/format/tab.pyx because it changed.
Compiling python/obitools3/uri/decode.pyx because it changed.
Compiling python/obitools3/commands/sort.pyx because it changed.
Compiling python/obitools3/commands/split.pyx because it changed.
Compiling python/obitools3/commands/uniq.pyx because it changed.
Compiling python/obitools3/commands/tail.pyx because it changed.
Compiling python/obitools3/commands/clean.pyx because it changed.
Compiling python/obitools3/commands/ecopcr.pyx because it changed.
Compiling python/obitools3/commands/import.pyx because it changed.
Compiling python/obitools3/commands/head.pyx because it changed.
Compiling python/obitools3/commands/rm.pyx because it changed.
Compiling python/obitools3/commands/ls.pyx because it changed.
Compiling python/obitools3/commands/export.pyx because it changed.
Compiling python/obitools3/commands/less.pyx because it changed.
Compiling python/obitools3/commands/cat.pyx because it changed.
Compiling python/obitools3/commands/test.pyx because it changed.
Compiling python/obitools3/commands/alignpairedend.pyx because it changed.
Compiling python/obitools3/commands/ecotag.pyx because it changed.
Compiling python/obitools3/commands/annotate.pyx because it changed.
Compiling python/obitools3/commands/ngsfilter.pyx because it changed.
Compiling python/obitools3/commands/clean_dms.pyx because it changed.
Compiling python/obitools3/commands/taxonomy.pyx because it changed.
Compiling python/obitools3/commands/build_ref_db.pyx because it changed.
Compiling python/obitools3/commands/grep.pyx because it changed.
Compiling python/obitools3/commands/count.pyx because it changed.
Compiling python/obitools3/commands/history.pyx because it changed.
Compiling python/obitools3/commands/stats.pyx because it changed.
Compiling python/obitools3/commands/align.pyx because it changed.
Compiling python/obitools3/commands/addtaxids.pyx because it changed.
Compiling python/obitools3/dms/obiseq.pyx because it changed.
Compiling python/obitools3/dms/dms.pyx because it changed.
Compiling python/obitools3/dms/object.pyx because it changed.
Compiling python/obitools3/dms/taxo/taxo.pyx because it changed.
Compiling python/obitools3/dms/view/view.pyx because it changed.
Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed.
Compiling python/obitools3/dms/column/column.pyx because it changed.
Compiling python/obitools3/dms/column/column_idx.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed.
Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed.
Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed.
Compiling python/obitools3/parsers/genbank.pyx because it changed.
Compiling python/obitools3/parsers/embl.pyx because it changed.
Compiling python/obitools3/parsers/fasta.pyx because it changed.
Compiling python/obitools3/parsers/universal.pyx because it changed.
Compiling python/obitools3/parsers/ngsfilter.pyx because it changed.
Compiling python/obitools3/parsers/header.pyx because it changed.
Compiling python/obitools3/parsers/fastq.pyx because it changed.
Compiling python/obitools3/parsers/tab.pyx because it changed.
Compiling python/obitools3/writers/fasta.pyx because it changed.
Compiling python/obitools3/writers/fastq.pyx because it changed.
Compiling python/obitools3/writers/tab.pyx because it changed.
Compiling python/obitools3/apps/arguments.pyx because it changed.
Compiling python/obitools3/apps/config.pyx because it changed.
Compiling python/obitools3/apps/progress.pyx because it changed.
Compiling python/obitools3/apps/command.pyx because it changed.
Compiling python/obitools3/apps/logging.pyx because it changed.
Compiling python/obitools3/apps/temp.pyx because it changed.
Compiling python/obitools3/files/uncompress.pyx because it changed.
Compiling python/obitools3/files/linebuffer.pyx because it changed.
Compiling python/obitools3/files/universalopener.pyx because it changed.
[ 1/80] Cythonizing python/obitools3/apps/arguments.pyx
[ 2/80] Cythonizing python/obitools3/apps/command.pyx
[ 3/80] Cythonizing python/obitools3/apps/config.pyx
[ 4/80] Cythonizing python/obitools3/apps/logging.pyx
[ 5/80] Cythonizing python/obitools3/apps/progress.pyx
[ 6/80] Cythonizing python/obitools3/apps/temp.pyx
[ 7/80] Cythonizing python/obitools3/commands/addtaxids.pyx
[ 8/80] Cythonizing python/obitools3/commands/align.pyx
[ 9/80] Cythonizing python/obitools3/commands/alignpairedend.pyx
[10/80] Cythonizing python/obitools3/commands/annotate.pyx
[11/80] Cythonizing python/obitools3/commands/build_ref_db.pyx
[12/80] Cythonizing python/obitools3/commands/cat.pyx
[13/80] Cythonizing python/obitools3/commands/clean.pyx
[14/80] Cythonizing python/obitools3/commands/clean_dms.pyx
[15/80] Cythonizing python/obitools3/commands/count.pyx
[16/80] Cythonizing python/obitools3/commands/ecopcr.pyx
[17/80] Cythonizing python/obitools3/commands/ecotag.pyx
[18/80] Cythonizing python/obitools3/commands/export.pyx
[19/80] Cythonizing python/obitools3/commands/grep.pyx
[20/80] Cythonizing python/obitools3/commands/head.pyx
[21/80] Cythonizing python/obitools3/commands/history.pyx
[22/80] Cythonizing python/obitools3/commands/import.pyx
[23/80] Cythonizing python/obitools3/commands/less.pyx
[24/80] Cythonizing python/obitools3/commands/ls.pyx
[25/80] Cythonizing python/obitools3/commands/ngsfilter.pyx
[26/80] Cythonizing python/obitools3/commands/rm.pyx
[27/80] Cythonizing python/obitools3/commands/sort.pyx
[28/80] Cythonizing python/obitools3/commands/split.pyx
[29/80] Cythonizing python/obitools3/commands/stats.pyx
[30/80] Cythonizing python/obitools3/commands/tail.pyx
[31/80] Cythonizing python/obitools3/commands/taxonomy.pyx
[32/80] Cythonizing python/obitools3/commands/test.pyx
[33/80] Cythonizing python/obitools3/commands/uniq.pyx
[34/80] Cythonizing python/obitools3/dms/column/column.pyx
[35/80] Cythonizing python/obitools3/dms/column/column_idx.pyx
[36/80] Cythonizing python/obitools3/dms/column/typed_column/bool.pyx
[37/80] Cythonizing python/obitools3/dms/column/typed_column/char.pyx
[38/80] Cythonizing python/obitools3/dms/column/typed_column/float.pyx
[39/80] Cythonizing python/obitools3/dms/column/typed_column/int.pyx
[40/80] Cythonizing python/obitools3/dms/column/typed_column/qual.pyx
[41/80] Cythonizing python/obitools3/dms/column/typed_column/seq.pyx
[42/80] Cythonizing python/obitools3/dms/column/typed_column/str.pyx
[43/80] Cythonizing python/obitools3/dms/dms.pyx
[44/80] Cythonizing python/obitools3/dms/obiseq.pyx
[45/80] Cythonizing python/obitools3/dms/object.pyx
[46/80] Cythonizing python/obitools3/dms/taxo/taxo.pyx
[47/80] Cythonizing python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx
[48/80] Cythonizing python/obitools3/dms/view/view.pyx
[49/80] Cythonizing python/obitools3/files/linebuffer.pyx
[50/80] Cythonizing python/obitools3/files/uncompress.pyx
[51/80] Cythonizing python/obitools3/files/universalopener.pyx
[52/80] Cythonizing python/obitools3/format/fasta.pyx
[53/80] Cythonizing python/obitools3/format/fastq.pyx
[54/80] Cythonizing python/obitools3/format/header.pyx
[55/80] Cythonizing python/obitools3/format/tab.pyx
[56/80] Cythonizing python/obitools3/libalign/_assemble.pyx
[57/80] Cythonizing python/obitools3/libalign/_dynamic.pyx
[58/80] Cythonizing python/obitools3/libalign/_freeendgap.pyx
[59/80] Cythonizing python/obitools3/libalign/_freeendgapfm.pyx
[60/80] Cythonizing python/obitools3/libalign/_nws.pyx
[61/80] Cythonizing python/obitools3/libalign/_qsassemble.pyx
[62/80] Cythonizing python/obitools3/libalign/_qsrassemble.pyx
[63/80] Cythonizing python/obitools3/libalign/_rassemble.pyx
[64/80] Cythonizing python/obitools3/libalign/_solexapairend.pyx
[65/80] Cythonizing python/obitools3/libalign/apat_pattern.pyx
[66/80] Cythonizing python/obitools3/libalign/shifted_ali.pyx
[67/80] Cythonizing python/obitools3/parsers/embl.pyx
[68/80] Cythonizing python/obitools3/parsers/embl_genbank_features.pyx
[69/80] Cythonizing python/obitools3/parsers/fasta.pyx
[70/80] Cythonizing python/obitools3/parsers/fastq.pyx
[71/80] Cythonizing python/obitools3/parsers/genbank.pyx
[72/80] Cythonizing python/obitools3/parsers/header.pyx
[73/80] Cythonizing python/obitools3/parsers/ngsfilter.pyx
[74/80] Cythonizing python/obitools3/parsers/tab.pyx
[75/80] Cythonizing python/obitools3/parsers/universal.pyx
[76/80] Cythonizing python/obitools3/uri/decode.pyx
[77/80] Cythonizing python/obitools3/utils.pyx
[78/80] Cythonizing python/obitools3/writers/fasta.pyx
[79/80] Cythonizing python/obitools3/writers/fastq.pyx
[80/80] Cythonizing python/obitools3/writers/tab.pyx
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build 
running build
running build_clib
Build the build/cobject directory
Run CMake
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- The C compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Configuring done (0.8s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject
Compile the shared C library
make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
/usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks"
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make  -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend
make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color="
make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make  -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build
make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
[  1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c"
[  3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c"
[  5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c"
[  7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c"
[  9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c"
[ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c"
[ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c"
[ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c"
[ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c"
[ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c"
[ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c"
[ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c"
[ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c"
[ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c"
[ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c"
[ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c"
[ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c"
[ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c"
[ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c"
[ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c"
[ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c"
[ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c"
[ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c"
[ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c"
[ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c"
[ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c"
[ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c"
[ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c"
[ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c"
[ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c"
[ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c"
[ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c"
[ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c"
[ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c"
[ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c"
[ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c"
[ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c"
[ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c"
[ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c"
[ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c"
[ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c"
[ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c"
[ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c"
[ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c"
[ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c"
[ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c"
[ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c"
[ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c"
[ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c"
[ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c"
[ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o
/usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c"
[100%] Linking C shared library libcobitools3.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libcobitools3.so -o libcobitools3.so CMakeFiles/cobitools3.dir/obisig.c.o CMakeFiles/cobitools3.dir/obierrno.c.o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o CMakeFiles/cobitools3.dir/obi_lcs.c.o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o CMakeFiles/cobitools3.dir/bloom.c.o CMakeFiles/cobitools3.dir/build_reference_db.c.o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o CMakeFiles/cobitools3.dir/obi_ecotag.c.o CMakeFiles/cobitools3.dir/encode.c.o CMakeFiles/cobitools3.dir/obiavl.c.o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o  /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
[100%] Built target cobitools3
make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
/usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so
make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
running build_py
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format
copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms
copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi
copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column
copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column
copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
running build_ext
building 'obitools3.utils' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._qsassemble' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._freeendgapfm' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._freeendgap' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._qsrassemble' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._nws' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign.shifted_ali' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._assemble' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign.apat_pattern' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._solexapairend' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._rassemble' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so
building 'obitools3.libalign._dynamic' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_dynamic.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so
building 'obitools3.format.fasta' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/format
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fasta.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-x86_64-linux-gnu.so
building 'obitools3.format.header' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/header.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-x86_64-linux-gnu.so
building 'obitools3.format.fastq' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fastq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.format.tab' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/tab.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so
building 'obitools3.uri.decode' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri/decode.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.sort' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/sort.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.split' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/split.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.uniq' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.tail' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/tail.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.clean' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.ecopcr' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.import' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.head' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.rm' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.ls' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.export' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.less' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.cat' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.test' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.alignpairedend' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.ecotag' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.annotate' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.ngsfilter' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.clean_dms' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.taxonomy' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.build_ref_db' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.grep' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.count' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.history' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.stats' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.align' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so
building 'obitools3.commands.addtaxids' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.obiseq' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.dms' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.object' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.taxo.taxo' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.view.view' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.column' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.column_idx' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.qual' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.char' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.int' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.seq' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.bool' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.str' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so
building 'obitools3.dms.column.typed_column.float' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.embl_genbank_features' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.genbank' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/genbank.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.embl' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.fasta' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fasta.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.universal' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/universal.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.ngsfilter' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.header' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/header.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.fastq' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fastq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.parsers.tab' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/tab.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so
building 'obitools3.writers.fasta' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fasta.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so
building 'obitools3.writers.fastq' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fastq.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so
building 'obitools3.writers.tab' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/tab.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.arguments' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/arguments.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.config' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/config.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.progress' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/progress.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.command' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/command.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.logging' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/logging.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so
building 'obitools3.apps.temp' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/temp.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so
building 'obitools3.files.uncompress' extension
creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/files
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so
building 'obitools3.files.linebuffer' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so
building 'obitools3.files.universalopener' extension
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -w -fPIC
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/obi -> build/scripts-3.13
changing mode of build/scripts-3.13/obi from 644 to 755
   dh_auto_test -O--buildsystem=pybuild
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
Traceback (most recent call last):
  File "/usr/bin/pybuild", line 604, in <module>
    main(cfg)
    ~~~~^^^^^
  File "/usr/bin/pybuild", line 375, in main
    iversions = build_sorted(versions, impl=ipreter.impl)
  File "/usr/share/dh-python/dhpython/version.py", line 450, in build_sorted
    default_ver = default(impl)
  File "/usr/share/dh-python/dhpython/version.py", line 381, in default
    raise ValueError("interpreter implementation not supported: %r" % impl)
ValueError: interpreter implementation not supported: ''
PYTHONPATH= \
	http_proxy='127.0.0.1:9' \
    dh_auto_install
I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_clib
Build the build/cobject directory
Run CMake
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- Configuring done (0.0s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject
Compile the shared C library
make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
/usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks"
make  -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make  -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend
make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make  -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build
make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
[100%] Built target cobitools3
make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
/usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0
make  -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so
make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
running build_py
running build_ext
running build_scripts
running install_lib
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files/__init__.py to __init__.cpython-313.pyc
running install_egg_info
running egg_info
creating python/OBITools3.egg-info
writing python/OBITools3.egg-info/PKG-INFO
writing dependency_links to python/OBITools3.egg-info/dependency_links.txt
writing top-level names to python/OBITools3.egg-info/top_level.txt
writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'
reading manifest file 'python/OBITools3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'python'
warning: no files found matching '*.h' under directory 'python'
warning: no files found matching '*.txt' under directory 'doc/sphinx/source'
warning: no files found matching '*.rst' under directory 'doc/sphinx/source'
warning: no files found matching '*.py' under directory 'doc/sphinx/source'
warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext'
warning: no files found matching 'doc/sphinx/Makefile'
warning: no files found matching 'doc/sphinx/Doxyfile'
adding license file 'LICENSE'
writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'
Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/OBITools3-3.0.1b26.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin
copying build/scripts-3.13/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin
changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755
make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
   dh_install -O--buildsystem=pybuild
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   dh_installexamples -O--buildsystem=pybuild
   debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
dh_installman
find debian -name "ecoPCR.1*" -delete
find debian -name "ecofind.1*" -delete
make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg'
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
dwz: debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so: .debug_info section not present
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so'
dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries
dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-4_amd64.deb'.
dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-4_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-4_amd64.buildinfo
 dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-4_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/653172 and its subdirectories
I: Current time: Sat Mar 28 13:09:38 -12 2026
I: pbuilder-time-stamp: 1774746578
Sun Feb 23 18:46:40 UTC 2025  I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net.
Sun Feb 23 18:46:40 UTC 2025  I: Preparing to do remote build '2' on infom01-amd64.debian.net.
Sun Feb 23 18:55:47 UTC 2025  I: Deleting $TMPDIR on infom01-amd64.debian.net.
Sun Feb 23 18:55:48 UTC 2025  I: obitools_3.0.1~b26+dfsg-4_amd64.changes:
Format: 1.8
Date: Fri, 10 Jan 2025 23:52:37 +1100
Source: obitools
Binary: obitools obitools-dbgsym
Architecture: amd64
Version: 3.0.1~b26+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Stuart Prescott <stuart@debian.org>
Description:
 obitools   - programs to analyze NGS data in a DNA metabarcoding context
Closes: 1092065
Changes:
 obitools (3.0.1~b26+dfsg-4) unstable; urgency=medium
 .
   * Team upload.
   * Add patch to fix FTBFS with Python 3.13 as the default (Closes: #1092065).
Checksums-Sha1:
 778b5c8ed9d155e9e9d7f896ea6089f08da14729 16605700 obitools-dbgsym_3.0.1~b26+dfsg-4_amd64.deb
 17c321ae2fda8dea91a5f1ba08df3e8bfa6ccbba 7102 obitools_3.0.1~b26+dfsg-4_amd64.buildinfo
 7b8984ce50c811d577d1e0469198f189c62766a1 5775632 obitools_3.0.1~b26+dfsg-4_amd64.deb
Checksums-Sha256:
 e2d2b383efe4f939ca2cc4d41611612744d8cd6c0319157e8bab90b8fc94bb30 16605700 obitools-dbgsym_3.0.1~b26+dfsg-4_amd64.deb
 cb43b8a6a0d0a530e09889f2b81819f2d8f75468b9a43fc9502e27beb6f76ead 7102 obitools_3.0.1~b26+dfsg-4_amd64.buildinfo
 c305978481d625e86546b4585d82ef4122bdd39c09ee41fcd9b149f3cecdb776 5775632 obitools_3.0.1~b26+dfsg-4_amd64.deb
Files:
 20c10d82fbe960d9a9feaf3e22c83f27 16605700 debug optional obitools-dbgsym_3.0.1~b26+dfsg-4_amd64.deb
 57add015a6bb3fddbce8af52a9e528df 7102 science optional obitools_3.0.1~b26+dfsg-4_amd64.buildinfo
 3f6a752d6cf60eda4be6c49d56203af1 5775632 science optional obitools_3.0.1~b26+dfsg-4_amd64.deb
Sun Feb 23 18:55:49 UTC 2025  I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_36-49325.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/obitools_3.0.1~b26+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/obitools_3.0.1~b26+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/obitools_3.0.1~b26+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/b1/obitools_3.0.1~b26+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/b2/obitools_3.0.1~b26+dfsg-4_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.004s)
       0.004s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 255ms
CPU time consumed: 256ms
Sun Feb 23 18:55:49 UTC 2025  I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sun Feb 23 18:55:49 UTC 2025  I: obitools from trixie built successfully and reproducibly on amd64.
Sun Feb 23 18:55:51 UTC 2025  I: Submitting .buildinfo files to external archives:
Sun Feb 23 18:55:52 UTC 2025  I: Submitting 8.0K	b1/obitools_3.0.1~b26+dfsg-4_amd64.buildinfo.asc
Sun Feb 23 18:55:52 UTC 2025  I: Submitting 8.0K	b2/obitools_3.0.1~b26+dfsg-4_amd64.buildinfo.asc
Sun Feb 23 18:55:53 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Feb 23 18:55:53 UTC 2025  I: Done submitting .buildinfo files.
Sun Feb 23 18:55:53 UTC 2025  I: Removing signed obitools_3.0.1~b26+dfsg-4_amd64.buildinfo.asc files:
removed './b1/obitools_3.0.1~b26+dfsg-4_amd64.buildinfo.asc'
removed './b2/obitools_3.0.1~b26+dfsg-4_amd64.buildinfo.asc'