Tue May 14 02:45:23 UTC 2024 I: starting to build nthash/trixie/amd64 on jenkins on '2024-05-14 02:45' Tue May 14 02:45:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/7469/console.log Tue May 14 02:45:23 UTC 2024 I: Downloading source for trixie/nthash=2.3.0+dfsg-1 --2024-05-14 02:45:24-- http://deb.debian.org/debian/pool/main/n/nthash/nthash_2.3.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2091 (2.0K) [text/prs.lines.tag] Saving to: ‘nthash_2.3.0+dfsg-1.dsc’ 0K .. 100% 276M=0s 2024-05-14 02:45:24 (276 MB/s) - ‘nthash_2.3.0+dfsg-1.dsc’ saved [2091/2091] Tue May 14 02:45:24 UTC 2024 I: nthash_2.3.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nthash Binary: libnthash-dev, nthash Architecture: any Version: 2.3.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/bcgsc/ntHash Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/nthash Vcs-Git: https://salsa.debian.org/med-team/nthash.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), cmake, libbtllib-dev Package-List: libnthash-dev deb libdevel optional arch=any nthash deb science optional arch=any Checksums-Sha1: 95866739487ea8929299f23cd5c7b0f733179875 149256 nthash_2.3.0+dfsg.orig.tar.xz 96a7ebd47576481770cf1e82272f742fa609ae2d 15568 nthash_2.3.0+dfsg-1.debian.tar.xz Checksums-Sha256: a78028dc015ecb5a278f8ea2b1200a87d51d19c0f9cbc3f1a9b3ea0b6a1f3f2b 149256 nthash_2.3.0+dfsg.orig.tar.xz d6b8246afa51b56b2e19e21df0f8c6705bf5431aa6924cbc4d1cd582b32edcb8 15568 nthash_2.3.0+dfsg-1.debian.tar.xz Files: 5dea1bb8633987135a6303e17b518743 149256 nthash_2.3.0+dfsg.orig.tar.xz 58fb015d6a80436d1e8819150fe903a5 15568 nthash_2.3.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNY098RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG9VQ//XSJEE9uIxQJTOQ06OH/gfFXk1x7runVP B3D39QE8aHFh7pQMzJExsxhmjjEMo/6d8RpOEOZpQQyY8CA/Or/clgvKRpkI7m/F yG9lpdeaec3/fCT2groDzxQHlYvB4nYrO3JGKHxMImu3n6uBO4qA38aPdSESSJ1r nLWI5hXWa2qthvnT6GkV+ty5HxNCx5/e1vXfs7SQTHT2YRaFhdD8VvvJV7wwYc5w l1LIpYXsPcLl6vZe0skQjOaLJlcYTqvgsxE2MC4N3C4FdAxE87+43FcNVpVz37vQ a8DFIMQpHijvbOI9CaqZ49q2fzloKLSXNYXORP8pVTz+/XYH+bjI6VAoo2s+fNcZ BFjA6bvXuyNr51Ebd8hnhdEHWMXBmVEKk1CM2TTioT3NHL41ogGJUE3Qypt+9Wy+ utONV3tRBZA2f0luxk4onLB3rvjADMMoZR1VIRRdj0ME17Jvjc7G5NATXzaoVakT +sB774D9l6DqOEolMhbUrmmDwpvkVCQ4fJNeuzGZ/ukKNQ7yqsrLcwxxsMgJSlD1 2WM3oXlxpRnFpuSb/V4H7HigIhw5Uv/T+H2F6aHXd+KcANJw0yrDJq4TibdfgDEG PatTPRwzwseuU2rTE10dd4FxVvcoH4dgJ2SaHK4MdolkgOyoXZCIpBvenLBtV4Z5 NJEpyRrqqcU= =U5IG -----END PGP SIGNATURE----- Tue May 14 02:45:24 UTC 2024 I: Checking whether the package is not for us Tue May 14 02:45:24 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue May 14 02:45:24 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue May 14 02:46:13 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 15 21:08:25 -12 2025 I: pbuilder-time-stamp: 1750064905 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nthash_2.3.0+dfsg-1.dsc] I: copying [./nthash_2.3.0+dfsg.orig.tar.xz] I: copying [./nthash_2.3.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Oct 26 06:29:51 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nthash_2.3.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting nthash in nthash-2.3.0+dfsg dpkg-source: info: unpacking nthash_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking nthash_2.3.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_btllib.patch dpkg-source: info: applying update-argparse-decl.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/403959/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fcb05d50a34847319de9ef47f4c4bba7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='403959' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/pbuilderrc_v5cC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/b1 --logfile b1/build.log nthash_2.3.0+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 13 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/403959/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libbtllib-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libbtllib-dev; however: Package libbtllib-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbtllib-dev{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-d3{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsdsl-dev{a} libsdsl3{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} samtools{a} sensible-utils{a} wget{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules psmisc publicsuffix 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After unpacking 149 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 wget amd64 1.24.5-1 [979 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6 [45.6 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdivsufsort-dev amd64 2.0.1-6 [18.8 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsdsl3 amd64 2.1.1+dfsg-4+b1 [208 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libsdsl-dev amd64 2.1.1+dfsg-4+b1 [445 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbtllib-dev amd64 1.4.10+dfsg-1 [173 kB] Fetched 39.7 MB in 1s (61.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nthash-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nthash_2.3.0+dfsg-1_source.changes dpkg-buildpackage: info: source package nthash dpkg-buildpackage: info: source version 2.3.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' rm -rf docs make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' cp debian/argparse.hpp /build/reproducible-path/nthash-2.3.0+dfsg make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_auto_build --no-parallel --buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 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/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/nthash_lib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/nthash_lib.dir/build.make CMakeFiles/nthash_lib.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [ 12%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash.cpp [ 25%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash_consts.cpp [ 37%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash_lowlevel.cpp [ 50%] Linking CXX static library libnthash.a /usr/bin/cmake -P CMakeFiles/nthash_lib.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libnthash.a CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o /usr/bin/ranlib libnthash.a make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [ 50%] Built target nthash_lib make -f CMakeFiles/nthash.dir/build.make CMakeFiles/nthash.dir/depend make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/nthash.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/nthash.dir/build.make CMakeFiles/nthash.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object CMakeFiles/nthash.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -MD -MT CMakeFiles/nthash.dir/main.cpp.o -MF CMakeFiles/nthash.dir/main.cpp.o.d -o CMakeFiles/nthash.dir/main.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/main.cpp [ 75%] Linking CXX executable nthash /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash.dir/link.txt --verbose=1 /usr/bin/c++ -g -Wall -Wextra -Wl,-z,relro -Wl,-z,now CMakeFiles/nthash.dir/main.cpp.o -o nthash libnthash.a -lbtllib make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target nthash make -f CMakeFiles/nthash_tests.dir/build.make CMakeFiles/nthash_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/nthash_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/nthash_tests.dir/build.make CMakeFiles/nthash_tests.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object CMakeFiles/nthash_tests.dir/tests/tests.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -MD -MT CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -MF CMakeFiles/nthash_tests.dir/tests/tests.cpp.o.d -o CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp [100%] Linking CXX executable nthash_tests /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -Wall -Wextra -Wl,-z,relro -Wl,-z,now CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -o nthash_tests libnthash.a -lbtllib make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target nthash_tests make[3]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_auto_test cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: nthash_tests 1: Test command: /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu/nthash_tests 1: Working Directory: /build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu 1: Test timeout computed to be: 10000000 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling vs ntbase hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer back rolling 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer peeking 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing skipping Ns 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing base substitution 1: Testing RNA 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing block parsing 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seeds 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed back roll 1: Testing rolling spaced seeds vs masked hashing 1: Testing reset function 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing in spaced seeds 1/1 Test #1: nthash_tests ..................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.00 sec make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_before_dh_missing make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' find debian/tmp -type f \( -name LICENSE -o -name ChangeLog \) -delete make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libnthash-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libnthash-dev' in '../libnthash-dev_2.3.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'nthash' in '../nthash_2.3.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'nthash-dbgsym' in '../nthash-dbgsym_2.3.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../nthash_2.3.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../nthash_2.3.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/403959 and its subdirectories I: Current time: Sun Jun 15 21:09:10 -12 2025 I: pbuilder-time-stamp: 1750064950 Tue May 14 02:46:13 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue May 14 02:46:13 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue May 14 02:50:54 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue May 14 02:50:55 UTC 2024 I: nthash_2.3.0+dfsg-1_amd64.changes: Format: 1.8 Date: Wed, 26 Oct 2022 08:27:22 +0200 Source: nthash Binary: libnthash-dev nthash nthash-dbgsym Architecture: amd64 Version: 2.3.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libnthash-dev - Recursive hash function for hashing all possible k-mers in a DNA/ nthash - Methods to evaluate runtime and uniformity tests for hashing meth Changes: nthash (2.3.0+dfsg-1) unstable; urgency=medium . * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Build-Depends: cmake, libbtllib-dev * Update debian/argparse.hpp * Remove unused docs featuring compressed JS which can be easily restored via simly doxygen call Checksums-Sha1: 622ca287568960f4e5a2bc4e970d9bd2ec4f5daa 56916 libnthash-dev_2.3.0+dfsg-1_amd64.deb 81ccd359bda2346cd2f97c007f8c6c99d54117b9 463880 nthash-dbgsym_2.3.0+dfsg-1_amd64.deb 0c6e17fd19e207b02f872f565d2dfa79a84f409c 6805 nthash_2.3.0+dfsg-1_amd64.buildinfo f8e690a1cfabbb89816d25400c79e20970803b8a 120108 nthash_2.3.0+dfsg-1_amd64.deb Checksums-Sha256: bc2747d23f70e163b818ba464ae00a30497b00b5189167802ac8d63b2cc7d464 56916 libnthash-dev_2.3.0+dfsg-1_amd64.deb 897e2e2de62136c3e8d885576c7373e4e1ea3d5c23cd4d99f18a4bf5fe2692d7 463880 nthash-dbgsym_2.3.0+dfsg-1_amd64.deb fed56b4f9bb8a980e0851f3150adb331664aca0e8a6796073c7add4573c3e78a 6805 nthash_2.3.0+dfsg-1_amd64.buildinfo 03af9c605676df1b26451b589d7f5386c7650b22bdfb19cdd35155424c083bbb 120108 nthash_2.3.0+dfsg-1_amd64.deb Files: d301d6e36b577f5072a2d9d5de986c98 56916 libdevel optional libnthash-dev_2.3.0+dfsg-1_amd64.deb 1270272bb2490b3eb23f28437471688c 463880 debug optional nthash-dbgsym_2.3.0+dfsg-1_amd64.deb db5fa59daed443a995ccf62d93a821cb 6805 science optional nthash_2.3.0+dfsg-1_amd64.buildinfo 92f55ddf9791f916f4d5474ec7441999 120108 science optional nthash_2.3.0+dfsg-1_amd64.deb Tue May 14 02:50:56 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_6-7469.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/nthash_2.3.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/nthash_2.3.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/nthash_2.3.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/b1/nthash_2.3.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6SWpqt7L/b2/nthash_2.3.0+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.391s) 0.391s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 760ms CPU time consumed: 758ms Tue May 14 02:50:57 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Tue May 14 02:50:57 UTC 2024 I: nthash from trixie built successfully and reproducibly on amd64. Tue May 14 02:50:58 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 14 02:50:58 UTC 2024 I: Submitting 8.0K b1/nthash_2.3.0+dfsg-1_amd64.buildinfo.asc Tue May 14 02:50:59 UTC 2024 I: Submitting 8.0K b2/nthash_2.3.0+dfsg-1_amd64.buildinfo.asc Tue May 14 02:51:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 14 02:51:01 UTC 2024 I: Done submitting .buildinfo files. Tue May 14 02:51:01 UTC 2024 I: Removing signed nthash_2.3.0+dfsg-1_amd64.buildinfo.asc files: removed './b1/nthash_2.3.0+dfsg-1_amd64.buildinfo.asc' removed './b2/nthash_2.3.0+dfsg-1_amd64.buildinfo.asc'