Fri Jan 17 08:43:54 UTC 2025 I: starting to build mshr/trixie/amd64 on jenkins on '2025-01-17 08:43' Fri Jan 17 08:43:54 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/30669/console.log Fri Jan 17 08:43:54 UTC 2025 I: Downloading source for trixie/mshr=2019.2.0~git20230811.ff54a68+dfsg1-4 --2025-01-17 08:43:54-- http://deb.debian.org/debian/pool/main/m/mshr/mshr_2019.2.0%7egit20230811.ff54a68%2bdfsg1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3089 (3.0K) [text/prs.lines.tag] Saving to: ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc’ 0K ... 100% 469M=0s 2025-01-17 08:43:54 (469 MB/s) - ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc’ saved [3089/3089] Fri Jan 17 08:43:54 UTC 2025 I: mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mshr Binary: libmshr2019.2, libmshr-dev, libmshr-dev-common, python3-mshr, python3-mshr-real, libmshr64-2019.2, libmshr64-dev, python3-mshr64-real Architecture: any all Version: 2019.2.0~git20230811.ff54a68+dfsg1-4 Maintainer: Debian Science Team Uploaders: Johannes Ring , Drew Parsons , Francesco Ballarin Homepage: http://fenicsproject.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/fenics/mshr Vcs-Git: https://salsa.debian.org/science-team/fenics/mshr.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev (>= 2019.2), libdolfin64-dev (>= 2019.2.0~git20200218.027d9cc-16), python3-ffc (>= 2019.2), python3-numpy, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real Package-List: libmshr-dev deb libdevel optional arch=any libmshr-dev-common deb libdevel optional arch=any libmshr2019.2 deb libs optional arch=any libmshr64-2019.2 deb libs optional arch=any libmshr64-dev deb libdevel optional arch=any python3-mshr deb python optional arch=all python3-mshr-real deb python optional arch=any python3-mshr64-real deb python optional arch=any Checksums-Sha1: 8abb2f4cf49293eb43c5e4161db4f1f66f1fde85 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz 706b5cc4d51e12c65a32f3cca2f8e36aa70f9cdd 14216 mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz Checksums-Sha256: ff8acee3a86db94d06007d5fe9b4144c1ec3c0c793cf3b67e1dc292440e71839 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz d9ae5b87f6ad78f03dc4b2bf2b2a3bae1583c88c72e3418783642e5ac4031d99 14216 mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz Files: 18dcfc422441a7b9636f3774c1232fe6 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz a8bb420acc6bf12f3d1ab9d2faec40cc 14216 mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEG10EseUHu/A2aeK4AfNfwz5zr4wFAmcnjOMACgkQAfNfwz5z r4yqrw//am8ojZXx77hdBk7B6YiBWGuh5qWGVoE1xtSuidhgt+LHR69tTxfihJ+d PVtkaFbVOQL8WO6N2ikmEQGYEJV2uaiDxSu+w6Avt08yAf8AgDH5DEpvy3cSk8c/ YHGWQY21khucRdymBaqeZa8mAGBHo9HYq8bQesWZs5QsnjP/lYLwugqcUFh3w0zX OIrifJVn3lFely1VpZKHEc44bTsCId7KQfogJCTQ8qo3+62pI8HLrjBaQUqcvXoZ 9zJr5+wYldVPkrJfzWoUMEvmOdMAVS9D30cjYybS25FCcYxezq0V3HlCKqy97j4z x5dSQX8YAJtnY0lOcYYyzjG3lMgbdtQ/AsTXEqyN3eKaQX901gzUnxPwDxBUqi6j 4W6VZ6SKeAIOSswVOAeYTo5WoSVHXD5gsS/mxUHfLYdjpKv2Ul965ww1KLFh7Xx5 RhqqiWKgRGfhczI+tCNJCb0IZJOEFWfnDtzoXny3P/WK76MomHcZXIchzxvXiR8+ zHrucor/uXaZplZDdU9cjURtpTWhXv9Za+QOFOW0ZrLAxMWs5c7kaVWjjgVR2/Jf eJpewpsF2JT61t4Ar34RlP7H4a1LmdskI5AY9kRiLRRMSuSNnKb0/W0/3HUbLE82 NIi8cLmTmyFIz5saYjQm0Rw8jaBIvtZFgnyzqTVhExRS6Pct6p4= =LehO -----END PGP SIGNATURE----- Fri Jan 17 08:43:54 UTC 2025 I: Checking whether the package is not for us Fri Jan 17 08:43:54 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Jan 17 08:43:54 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Jan 17 09:09:16 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Feb 19 03:06:55 -12 2026 I: pbuilder-time-stamp: 1771513615 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting mshr in mshr-2019.2.0~git20230811.ff54a68+dfsg1 dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_controls.diff dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying CGAL_6_compatibility.diff I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1752273/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='451454dc88144c6a9c9fed083c6ef015' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1752273' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/pbuilderrc_jyWg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/b1 --logfile b1/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1752273/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev (>= 2019.2), libdolfin64-dev (>= 2019.2.0~git20200218.027d9cc-16), python3-ffc (>= 2019.2), python3-numpy, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19853 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on libmpfr-dev; however: Package libmpfr-dev is not installed. pbuilder-satisfydepends-dummy depends on libgmp-dev; however: Package libgmp-dev is not installed. pbuilder-satisfydepends-dummy depends on libcgal-dev (>= 6.0~); however: Package libcgal-dev is not installed. pbuilder-satisfydepends-dummy depends on libtet1.5-dev; however: Package libtet1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin-dev (>= 2019.2); however: Package libdolfin-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin64-dev (>= 2019.2.0~git20200218.027d9cc-16); however: Package libdolfin64-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc (>= 2019.2); however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-64-real; however: Package python3-petsc4py-64-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-64-real; however: Package python3-slepc4py-64-real is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libblas64-3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcgal-dev{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfin-dev{a} libdolfin-dev-common{a} libdolfin2019.2t64{a} libdolfin64-2019.2t64{a} libdolfin64-dev{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libhypre64m-2.32.0{a} libhypre64m-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblapack64-3{a} libldap-2.5-0{a} libldap-dev{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmpfr-dev{a} libmumps-5.7{a} libmumps-64pord-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmumps64-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenblas64-0{a} libopenblas64-0-pthread{a} libopenblas64-dev{a} libopenblas64-pthread-dev{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpetsc64-real3.22{a} libpetsc64-real3.22-dev{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libslepc64-real3.22{a} libslepc64-real3.22-dev{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtet1.5{a} libtet1.5-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python-babel-localedata{a} python-petsc4py-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-dijitso{a} python3-docutils{a} python3-ffc{a} python3-fiat{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-petsc4py{a} python3-petsc4py-64-real{a} python3-petsc4py-64-real3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pkg-resources{a} python3-pybind11{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-64-real{a} python3-slepc4py-64-real3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl-legacy{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} swig{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpetsc-complex-dev libpetsc-real-dev libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-pil wget xauth zsh 0 packages upgraded, 400 newly installed, 0 to remove and 0 not upgraded. Need to get 374 MB of archives. After unpacking 1791 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.0-2 [1422 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-4 [200 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-4 [723 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.3-1 [2268 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.3-1 [11.9 MB] Get: 72 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-2 [539 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 79 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-4 [1600 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-12 [881 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-12 [11.7 MB] Get: 103 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-12 [13.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 105 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 106 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 52.0-2+b1 [62.2 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 52.0-2+b1 [343 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-6 [210 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 118 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-19 [23.6 MB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 125 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-3 [510 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libblas64-3 amd64 3.12.0-4 [146 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4 [234 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4 [235 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4 [240 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4 [245 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 144 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4 [230 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4 [333 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4 [373 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4 [239 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 149 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4 [282 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-4 [230 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-4 [231 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4 [298 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 154 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4 [330 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-6 [10.4 MB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4 [346 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4 [261 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 159 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-4 [523 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-4 [571 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 52.0-2+b1 [70.4 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-1 [652 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 52.0-2+b1 [28.2 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 52.0-2+b1 [43.4 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-4 [271 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.6-3 [97.0 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 52.0-2+b1 [636 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-2 [415 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.5.4-2 [165 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 8.1.3-4 [616 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.16.0-1 [114 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1.1 [120 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 8.1.3-4 [468 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.6-1 [3962 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 228 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-4 [290 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 230 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4 [347 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4 [375 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 233 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 234 http://deb.debian.org/debian trixie/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 235 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-4 [269 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-4 [276 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 238 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-4 [235 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-4 [236 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 241 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.40-5 [7180 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libmpfr-dev amd64 4.2.1-1+b2 [268 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libcgal-dev amd64 6.0.1-1 [5115 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.5.19+dfsg-1 [303 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.0-2 [2790 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.11.1-1 [464 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-16 [222 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1395 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.6-1 [660 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libhypre-2.32.0 amd64 2.32.0-4 [1717 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 286 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22 amd64 3.22.2+dfsg1-1+b1 [7850 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-4 [99.8 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1 [1386 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-16 [1967 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-3 [113 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-3 [3267 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-3 [18.7 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.6-1 [413 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.6-1 [1584 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 python3-mpi4py amd64 4.0.1-7 [996 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.5 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.7 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 python3-ufl-legacy all 1:2022.3.0-3 [158 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [232 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.6-1 [1394 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 329 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 336 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 342 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 libpetsc3.22-dev-common all 3.22.2+dfsg1-1 [311 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.32.0-4 [1988 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 351 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 352 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7948 kB] Get: 353 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-4 [112 kB] Get: 354 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1 [6394 kB] Get: 355 http://deb.debian.org/debian trixie/main amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-16 [52.1 kB] Get: 356 http://deb.debian.org/debian trixie/main amd64 libopenblas64-0-pthread amd64 0.3.28+ds-4 [6780 kB] Get: 357 http://deb.debian.org/debian trixie/main amd64 liblapack64-3 amd64 3.12.0-4 [2346 kB] Get: 358 http://deb.debian.org/debian trixie/main amd64 libhypre64m-2.32.0 amd64 2.32.0-4 [1579 kB] Get: 359 http://deb.debian.org/debian trixie/main amd64 libmumps-64pord-5.7 amd64 5.7.3-3+b1 [1963 kB] Get: 360 http://deb.debian.org/debian trixie/main amd64 libpetsc64-real3.22 amd64 3.22.2+dfsg1-1+b1 [7783 kB] Get: 361 http://deb.debian.org/debian trixie/main amd64 libslepc64-real3.22 amd64 3.22.2+dfsg1-1 [1381 kB] Get: 362 http://deb.debian.org/debian trixie/main amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-16 [1967 kB] Get: 363 http://deb.debian.org/debian trixie/main amd64 libopenblas64-0 amd64 0.3.28+ds-4 [39.8 kB] Get: 364 http://deb.debian.org/debian trixie/main amd64 libopenblas64-pthread-dev amd64 0.3.28+ds-4 [4762 kB] Get: 365 http://deb.debian.org/debian trixie/main amd64 libopenblas64-dev amd64 0.3.28+ds-4 [39.9 kB] Get: 366 http://deb.debian.org/debian trixie/main amd64 libhypre64m-dev amd64 2.32.0-4 [1831 kB] Get: 367 http://deb.debian.org/debian trixie/main amd64 libmumps64-dev amd64 5.7.3-3+b1 [1861 kB] Get: 368 http://deb.debian.org/debian trixie/main amd64 libpetsc64-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7977 kB] Get: 369 http://deb.debian.org/debian trixie/main amd64 libslepc64-real3.22-dev amd64 3.22.2+dfsg1-1 [6441 kB] Get: 370 http://deb.debian.org/debian trixie/main amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-16 [44.7 kB] Get: 371 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 372 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 373 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 374 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] Get: 375 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 376 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB] Get: 377 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.1-3 [5013 kB] Get: 378 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.8-1 [1068 B] Get: 379 http://deb.debian.org/debian trixie/main amd64 libtet1.5 amd64 1.5.0-5+b2 [239 kB] Get: 380 http://deb.debian.org/debian trixie/main amd64 libtet1.5-dev amd64 1.5.0-5+b2 [29.9 kB] Get: 381 http://deb.debian.org/debian trixie/main amd64 pybind11-dev all 2.13.6-1 [204 kB] Get: 382 http://deb.debian.org/debian trixie/main amd64 python-petsc4py-doc all 3.22.1-2 [778 kB] Get: 383 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 384 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.8-1 [1048 B] Get: 385 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 386 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] Get: 387 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.1-3 [507 kB] Get: 388 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.8-1 [1068 B] Get: 389 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.3.0-0.1 [1502 kB] Get: 390 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-real3.22 amd64 3.22.1-2 [1994 kB] Get: 391 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-real all 3.22.1-2 [10.7 kB] Get: 392 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-64-real3.22 amd64 3.22.1-2 [1989 kB] Get: 393 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-64-real all 3.22.1-2 [10.6 kB] Get: 394 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py all 3.22.1-2 [10.9 kB] Get: 395 http://deb.debian.org/debian trixie/main amd64 python3-pybind11 all 2.13.6-1 [215 kB] Get: 396 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-real3.22 amd64 3.22.1-2 [492 kB] Get: 397 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-real all 3.22.1-2 [6616 B] Get: 398 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.1-2 [491 kB] Get: 399 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-64-real all 3.22.1-2 [6592 B] Get: 400 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py all 3.22.1-2 [6808 B] Fetched 374 MB in 7s (57.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19853 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20173 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../06-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../15-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21241 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../001-libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../004-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. 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Setting up libibmad5:amd64 (52.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up libldl3:amd64 (1:7.8.3+dfsg-2) ... Setting up file (1:5.45-3+b1) ... Setting up libboost-filesystem1.83.0:amd64 (1.83.0-4) ... Setting up libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-16) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up python-babel-localedata (2.16.0-1) ... Setting up libc6-dbg:amd64 (2.40-5) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Feb 19 15:08:55 UTC 2026. Universal Time is now: Thu Feb 19 15:08:55 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4) ... Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-4) ... Setting up libbtf2:amd64 (1:7.8.3+dfsg-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libmunge2:amd64 (0.5.15-4+b1) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-4) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libfftw3-quad3:amd64 (3.3.10-2+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.4.0-2) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up autopoint (0.22.5-4) ... Setting up icu-devtools (72.1-6) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libltdl7:amd64 (2.5.4-2) ... Setting up opencl-c-headers (3.0~2024.10.24-2) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-4) ... Setting up autoconf (2.72-3) ... Setting up libmumps-headers-dev (5.7.3-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libtet1.5:amd64 (1.5.0-5+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.6-3) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libtet1.5-dev:amd64 (1.5.0-5+b2) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.31.3-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-4) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up valgrind (1:3.20.0-2.1) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b3) ... Setting up openssl (3.4.0-2) ... Setting up libdrm-common (2.4.123-1) ... Setting up valgrind-mpi (1:3.20.0-2.1) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:amd64 (72.1-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libblas64-3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-12) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libarpack2t64:amd64 (3.9.1-4) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-4) ... Setting up libtool (2.5.4-2) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libopenblas64-0-pthread:amd64 (0.3.28+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libopenblas64-pthread-dev:amd64 (0.3.28+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4) ... Setting up liblapack64-3:amd64 (3.12.0-4) ... Setting up libmpfr-dev:amd64 (4.2.1-1+b2) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-12) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.5.4-2) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-4) ... Setting up libllvm17t64:amd64 (1:17.0.6-19) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libopenblas64-0:amd64 (0.3.28+ds-4) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.2.0-12) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.1-3) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4) ... Setting up libgnutls-openssl27t64:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (52.0-2+b1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-4) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libopenblas64-dev:amd64 (0.3.28+ds-4) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up ibverbs-providers:amd64 (52.0-2+b1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... Setting up python3.13 (3.13.1-3) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4) ... Setting up openssh-client (1:9.9p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.8-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-3) ... Setting up libldap-dev:amd64 (2.5.19+dfsg-1) ... Setting up libpython3.13-dev:amd64 (3.13.1-3) ... Setting up sphinx-common (8.1.3-4) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libpmix2t64:amd64 (5.0.6-1) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up librdmacm1t64:amd64 (52.0-2+b1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-3) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-3) ... Setting up python3.13-dev (3.13.1-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.23) ... Setting up python-petsc4py-doc (3.22.1-2) ... Setting up libibverbs-dev:amd64 (52.0-2+b1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... Setting up libcgal-dev:amd64 (6.0.1-1) ... Setting up libpython3.12t64:amd64 (3.12.8-3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhsa-runtime64-1:amd64 (5.7.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-3) ... Setting up cmake (3.31.3-1) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up krb5-multidev:amd64 (1.21.3-3) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... Setting up python3 (3.12.8-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libpython3.12-dev:amd64 (3.12.8-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up libkrb5-dev:amd64 (1.21.3-3) ... Setting up python3-roman (4.2-1) ... Setting up python3-jinja2 (3.1.3-1.1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up python3-certifi (2024.12.14+ds-1) ... Setting up libcurl4-openssl-dev:amd64 (8.11.1-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.8-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libpython3-dev:amd64 (3.12.8-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up pybind11-dev (2.13.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:amd64 (3.12.8-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.8-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-pybind11 (2.13.6-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-all-dev (3.12.8-1) ... Setting up libopenmpi40:amd64 (5.0.6-3) ... Setting up libptscotch-7.0:amd64 (7.0.6-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-3) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-ufl-legacy (1:2022.3.0-3) ... Setting up libparpack2t64:amd64 (3.9.1-4) ... Setting up libboost-mpi1.83.0 (1.83.0-4) ... Setting up openmpi-bin (5.0.6-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up dh-python (6.20250108) ... Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-4) ... Setting up python3-mpi4py (4.0.1-7) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhypre64m-2.32.0:amd64 (2.32.0-4) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ... Setting up libmumps-64pord-5.7:amd64 (5.7.3-3+b1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libpetsc64-real3.22:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.22 (libpetsc64.so.3.22) in auto mode Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up libslepc64-real3.22 (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.22 (libslepc64.so.3.22) in auto mode Setting up libpetsc-real3.22:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up python3-petsc4py-real3.22 (3.22.1-2) ... Setting up python3-petsc4py-64-real3.22 (3.22.1-2) ... Setting up python3-petsc4py-64-real (3.22.1-2) ... Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-16) ... Setting up python3-petsc4py (3.22.1-2) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-real (3.22.1-2) ... Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-16) ... Setting up python3-slepc4py-64-real3.22 (3.22.1-2) ... Setting up python3-slepc4py-real3.22 (3.22.1-2) ... Setting up python3-slepc4py (3.22.1-2) ... Setting up python3-slepc4py-real (3.22.1-2) ... Setting up python3-slepc4py-64-real (3.22.1-2) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.1.3-4) ... Setting up libpmix-dev:amd64 (5.0.6-1) ... Setting up libopenmpi-dev:amd64 (5.0.6-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up mpi-default-dev (1.18) ... Setting up libhypre64m-dev:amd64 (2.32.0-4) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libmumps64-dev:amd64 (5.7.3-3+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.6-1) ... Setting up libparpack2-dev:amd64 (3.9.1-4) ... Setting up libhypre-dev:amd64 (2.32.0-4) ... Setting up libptscotch-dev (7.0.6-1) ... Setting up libboost-mpi1.83-dev (1.83.0-4) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-3) ... Setting up libpetsc3.22-dev-common (3.22.2+dfsg1-1) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libpetsc64-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.22 (petsc64-3.22) in auto mode Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-16) ... Setting up libslepc64-real3.22-dev (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.22 (slepc64-3.22) in auto mode Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-16) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.36.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_source.changes dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake \ --with python3 \ --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean rm -rf python/build* rm -rf python/mshr.egg-info rm -rf debian/tmp64 rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules build py3versions: no X-Python3-Version in control file, using supported versions dh build --buildsystem=cmake \ --with python3 \ --no-parallel dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64" cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. 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Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr.so.2019.2 -o libmshr.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet 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95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF 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/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real 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'/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr64.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr64.so.2019.2 -o libmshr64.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/cmake -E cmake_symlink_library libmshr64.so.2019.2.0.dev0 libmshr64.so.2019.2 libmshr64.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 90%] Built target mshr make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/depend 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'/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_auto_test -O--buildsystem=cmake -O--no-parallel create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake \ --with python3 \ --no-parallel dh_testroot -O--buildsystem=cmake -O--no-parallel dh_prep -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=obj-x86_64-linux-gnu --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64 cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' set -e; \ for v in python3.12 python3.13 ; do \ cd python; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp --install-layout=deb; \ PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64 --install-layout=deb; \ cd ..; \ done CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.8", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Configuring done (4.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.12 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.8", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Configuring done (2.5s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64 running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.12 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' removing '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info' (and everything under it) Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' removing '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info' (and everything under it) Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_install -O--buildsystem=cmake -O--no-parallel dh_installdocs -O--buildsystem=cmake -O--no-parallel dh_installchangelogs -O--buildsystem=cmake -O--no-parallel dh_installexamples -O--buildsystem=cmake -O--no-parallel dh_installman -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a dh_numpy3 -a mkdir -p debian/python3-mshr-real//usr/lib/mshr mv debian/python3-mshr-real/usr/lib/python3 debian/python3-mshr-real//usr/lib/mshr mkdir -p debian/python3-mshr64-real//usr/lib/mshr64 mv debian/python3-mshr64-real/usr/lib/python3 debian/python3-mshr64-real//usr/lib/mshr64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_python3 -O--buildsystem=cmake -O--no-parallel -Nlibmshr2019.2 -Nlibmshr-dev -Nlibmshr-dev-common -Npython3-mshr-real -Nlibmshr64-2019.2 -Nlibmshr64-dev -Npython3-mshr64-real dh_installsystemduser -O--buildsystem=cmake -O--no-parallel dh_perl -O--buildsystem=cmake -O--no-parallel dh_link -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel dh_compress -O--buildsystem=cmake -O--no-parallel dh_fixperms -O--buildsystem=cmake -O--no-parallel dh_missing -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off for amd64";; \ *) dh_dwz;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) dh_strip --no-automatic-dbgsym;; \ *) dh_strip;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_makeshlibs -a -O--buildsystem=cmake -O--no-parallel dh_shlibdeps -a -O--buildsystem=cmake -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \ -Vpybind11:Upstream-Version=2.13 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: Depends field of package libmshr64-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libmshr64-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr64-2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr-dev-common: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr64-2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmshr-dev: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_all.deb'. dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1752273 and its subdirectories I: Current time: Thu Feb 19 03:32:14 -12 2026 I: pbuilder-time-stamp: 1771515134 Fri Jan 17 09:09:16 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Jan 17 09:09:16 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Jan 17 11:20:29 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Jan 17 11:20:29 UTC 2025 I: mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.changes: Format: 1.8 Date: Sun, 03 Nov 2024 14:45:53 +0000 Source: mshr Binary: libmshr-dev libmshr-dev-common libmshr-dev-dbgsym libmshr2019.2 libmshr2019.2-dbgsym libmshr64-2019.2 libmshr64-2019.2-dbgsym libmshr64-dev python3-mshr python3-mshr-real python3-mshr-real-dbgsym python3-mshr64-real python3-mshr64-real-dbgsym Architecture: amd64 all Version: 2019.2.0~git20230811.ff54a68+dfsg1-4 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Francesco Ballarin Description: libmshr-dev - Shared links and header files for mshr libmshr-dev-common - Shared links and header files for mshr libmshr2019.2 - Shared libraries for mshr libmshr64-2019.2 - Shared libraries for mshr with 64-bit indexing libmshr64-dev - Shared links and header files for mshr with 64-bit indexing python3-mshr - Python 3 interface for mshr python3-mshr-real - Python 3 interface for mshr python3-mshr64-real - Python 3 interface for mshr with 64-bit indexing Closes: 1086299 Changes: mshr (2019.2.0~git20230811.ff54a68+dfsg1-4) unstable; urgency=medium . * Bump Standards-Version to 4.7.0 * Force rebuild against OpenMPI 5. Closes: #1086299. 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libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 2d946260f057c913d538fd53105808640135fc1cb83c25e92c59ccc46a6b4885 51233180 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 89049014eb65358f0629d435768c83bc795ebad22f3547d30b4a3d79864d5080 1838440 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb c57f064593e8572da962a6e2806d069cdcf66114e82ed9b325aaa71ec62bafe0 51232364 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb b929be663739d13c6961547281523ed726e0138f3d4c7e9c9b90a36744aaea27 1835968 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 0fe2f38ca09c5a89cf8cd95f58b867d7c1a5e5b3e3f10f2ceab43c19edca40c3 5824 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 1991ea76e370ad6a8c1ff280d5a2e8bab7adc0a22548ceb0a9e2bf28d41e6131 22252 mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo f20fafffa6f54c52e22e9c8564fd2c3d6c17e222df069bb907de7fa5a67e7a5a 2817880 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 63c4e5543562454c683753a961f1e08017d5753216ac7a5295905fcd50bcd8c0 149888 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 8a9c131b37eb88bd01c74fd7953eeb580f73cb951f75c6c0abe12b8b755c0a81 2817868 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 95f8a5c2fefc3a161876b8b2506f9c5d28901bacf3c44b574d3e264f18b5bb3f 150496 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 6e4a59919816188760a90549042890df1b83fdd51878c9a1a89adebdba4b46a7 8816 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_all.deb Files: 84f02a1ee580e435b36d99a8196c94f7 15524 libdevel optional libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 3ec0263335e46fa3dd1404db2d5c73b5 612780 debug optional libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb d2ff383ada2fbd51bc4a72c477fb26da 38924 libdevel optional libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 4b431f1e2ee037fa604ca4fb640e36c2 51233180 debug optional libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 2cec57bbc5f89fa01065b346973369fc 1838440 libs optional libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb bdb0400ca535955e4183e1ed1dcc12c6 51232364 debug optional libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb efbf231bd8ba63a3cc7004953d898add 1835968 libs optional libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb f2a5ea4d9c982283778a39fa90cb4adb 5824 libdevel optional libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb b29a056b627b49800bc94729b4469097 22252 math optional mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo 39f54fdc3a0b60c8db43538fd1c2f193 2817880 debug optional python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 58ae84a0af08e6b3c95f5bc244deee2a 149888 python optional python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb b232e1e9dd9c3f01d98aea29a2957e6a 2817868 debug optional python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb 552b204d977702a673e2dfef88a56d4b 150496 python optional python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb b71b842f95baafb532c5650832d012f9 8816 python optional python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_all.deb Fri Jan 17 11:20:30 UTC 2025 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_22-30669.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.25h9osSx/b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.288s) 1.288s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.974s) 0.974s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.591s CPU time consumed: 1.585s Fri Jan 17 11:20:33 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Fri Jan 17 11:20:33 UTC 2025 I: mshr from trixie built successfully and reproducibly on amd64. Fri Jan 17 11:20:34 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Jan 17 11:20:34 UTC 2025 I: Submitting 24K b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo.asc Fri Jan 17 11:20:35 UTC 2025 I: Submitting 24K b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo.asc Fri Jan 17 11:20:36 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 17 11:20:36 UTC 2025 I: Done submitting .buildinfo files. Fri Jan 17 11:20:36 UTC 2025 I: Removing signed mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo.asc files: removed './b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo.asc' removed './b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo.asc'