Tue May 7 07:13:34 UTC 2024 I: starting to build minimac4/trixie/amd64 on jenkins on '2024-05-07 07:13' Tue May 7 07:13:34 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/6913/console.log Tue May 7 07:13:34 UTC 2024 I: Downloading source for trixie/minimac4=4.1.6-1 --2024-05-07 07:13:35-- http://deb.debian.org/debian/pool/main/m/minimac4/minimac4_4.1.6-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2288 (2.2K) [text/prs.lines.tag] Saving to: ‘minimac4_4.1.6-1.dsc’ 0K .. 100% 294M=0s 2024-05-07 07:13:35 (294 MB/s) - ‘minimac4_4.1.6-1.dsc’ saved [2288/2288] Tue May 7 07:13:35 UTC 2024 I: minimac4_4.1.6-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: minimac4 Binary: minimac4 Architecture: any Version: 4.1.6-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi , Étienne Mollier Homepage: https://genome.sph.umich.edu/wiki/Minimac4 Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/minimac4 Vcs-Git: https://salsa.debian.org/med-team/minimac4.git Testsuite: autopkgtest Testsuite-Triggers: bcftools Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libstatgen-dev, libshrinkwrap-dev, libsavvy-dev, libomp-jonathonl-dev, liblzma-dev, libzstd-dev, bcftools Package-List: minimac4 deb science optional arch=any Checksums-Sha1: 190a527edb4cf800a0c3b6ed2cc732442c10ef72 53460 minimac4_4.1.6.orig.tar.gz 8104bc421b8d4b717ca4608f39775675dda37d23 5368 minimac4_4.1.6-1.debian.tar.xz Checksums-Sha256: 0bce8d6edbf5d5d944b19c4e36403d0bc1d18f2d6003d88e01086488c3eb9333 53460 minimac4_4.1.6.orig.tar.gz 994819c4e4ff50247f6f7420ed438e7cd802baaa445beecf3f581ef8ef346b2c 5368 minimac4_4.1.6-1.debian.tar.xz Files: e7c0cfe90add2248fc79824add76253a 53460 minimac4_4.1.6.orig.tar.gz 86de610bf26bb05bae065ea9149df3d1 5368 minimac4_4.1.6-1.debian.tar.xz Dgit: f06073708f98230727f744ec1f0ae2b7a82b38c1 debian archive/debian/4.1.6-1 https://git.dgit.debian.org/minimac4 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVzCnkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoxww//VN8VG/iYLukZlL/mut4jDnSvmKn7 HZGN2OojXPMtzVlI7yCROdWICQXaNkzntWKNoP6fc5c6X15lrANtWNziLVHw3fKa RVnN8Z9uEL6QHVHPh+zfXa6sje4nrMiU7Fr5biaXCyeUS0ht30nX/M3L695CQF7b SppP3j4AX0gPpFaj8k/6onJZPbGaNIDj/sTgl67DLsE8k6ht9GJtvyuJs3IGbLg5 ZndqE3I1UQdSzwHs7SXia+kimXN848bUEBfoNi/FBBEpAX11eAEoX75ShKuLcjTW v6mXVQBoUZ99C6oOlqSHLTmPoOD/CuDab8YfIM4OIf7dpcjSdXEL/xQ5TGjnoMGn ncSsDMNqL+fNjWrYN/8LN5YTewK6g5qwxEtpAARdTu6NYfzWW9p2LT6Th+VNvk+o hY8SeYQGNqeOKjcRRD2V1RpRmc5mrq2eAcQ6gIYs0zypq4fozM1rqmcIIKYecago wFtcjn0VEGrPC6PhYjXAAS3DOeBWlRT2luw5mM6uu4zBSyTkpu4EdT4kTemUqO8+ f8mFIZ6fPER9n9Rer50I3IFSVkxn1mb2kHv76jJ1FiOHI7Q9WDEo5h2oiSdSjrZ/ iLAjZHB/Buu9O3cwlnVC6Xz6JxZtmhdp14kaLPkfF1c2Qo+T7MLMNd9uayUJM9b2 qrkjd+gngOl7TF8= =Hdso -----END PGP SIGNATURE----- Tue May 7 07:13:35 UTC 2024 I: Checking whether the package is not for us Tue May 7 07:13:35 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue May 7 07:13:35 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue May 7 07:16:56 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 9 01:36:37 -12 2025 I: pbuilder-time-stamp: 1749476197 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minimac4_4.1.6-1.dsc] I: copying [./minimac4_4.1.6.orig.tar.gz] I: copying [./minimac4_4.1.6-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 8 12:22:17 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./minimac4_4.1.6-1.dsc: no acceptable signature found dpkg-source: info: extracting minimac4 in minimac4-4.1.6 dpkg-source: info: unpacking minimac4_4.1.6.orig.tar.gz dpkg-source: info: unpacking minimac4_4.1.6-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Use_shared_zlib.patch dpkg-source: info: applying lzma.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3135693/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a00e0d9a352640218aba1684c9974163' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3135693' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/pbuilderrc_31gR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/b1 --logfile b1/build.log minimac4_4.1.6-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3135693/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libstatgen-dev, libshrinkwrap-dev, libsavvy-dev, libomp-jonathonl-dev, liblzma-dev, libzstd-dev, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libstatgen-dev; however: Package libstatgen-dev is not installed. pbuilder-satisfydepends-dummy depends on libshrinkwrap-dev; however: Package libshrinkwrap-dev is not installed. pbuilder-satisfydepends-dummy depends on libsavvy-dev; however: Package libsavvy-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-jonathonl-dev; however: Package libomp-jonathonl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} blt{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libomp-jonathonl-dev{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsavvy-dev{a} libsharpyuv0{a} libshrinkwrap-dev{a} libssh2-1t64{a} libstatgen-dev{a} libstatgen1{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-appdirs{a} python3-argcomplete{a} python3-argh{a} python3-attr{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-gffutils{a} python3-importlib-metadata{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyfaidx{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-simplejson{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pybedtools shared-mime-info wget xdg-user-dirs 0 packages upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After unpacking 545 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-argcomplete all 3.3.0-1 [38.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-argh all 0.31.2-1 [26.5 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-pyfaidx all 0.8.1.1-2 [29.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 73 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-gffutils all 0.13-1 [1041 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.12-7 [3869 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 bcftools amd64 1.20-1 [760 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 166 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libomp-jonathonl-dev amd64 1.0.0-1 [7816 B] Get: 174 http://deb.debian.org/debian trixie/main amd64 libshrinkwrap-dev all 1.2.0-2 [12.3 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libsavvy-dev all 2.1.0-2 [73.6 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libstatgen1 amd64 1.0.15-7 [319 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libstatgen-dev amd64 1.0.15-7 [122 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 135 MB in 20s (6655 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20014 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21006 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../019-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../020-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../021-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../022-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../023-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../024-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../025-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../028-libldap-2.5-0_2.5.17+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../029-libnghttp2-14_1.61.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../030-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../032-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../033-libcurl3t64-gnutls_8.7.1-3_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.7.1-3) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../034-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../035-libhtscodecs2_1.6.0-1+b1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.0-1+b1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../036-libhts3t64_1.19+ds-1.1+b1_amd64.deb ... Unpacking libhts3t64:amd64 (1.19+ds-1.1+b1) ... Selecting previously unselected package python3-argcomplete. Preparing to unpack .../037-python3-argcomplete_3.3.0-1_all.deb ... Unpacking python3-argcomplete (3.3.0-1) ... Selecting previously unselected package python3-argh. Preparing to unpack .../038-python3-argh_0.31.2-1_all.deb ... Unpacking python3-argh (0.31.2-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../039-python3-more-itertools_10.2.0-1_all.deb ... Unpacking python3-more-itertools (10.2.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../040-python3-zipp_1.0.0-6_all.deb ... Unpacking python3-zipp (1.0.0-6) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../041-python3-importlib-metadata_4.12.0-1_all.deb ... Unpacking python3-importlib-metadata (4.12.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../042-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-pyfaidx. Preparing to unpack .../043-python3-pyfaidx_0.8.1.1-2_all.deb ... Unpacking python3-pyfaidx (0.8.1.1-2) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../044-python3-simplejson_3.19.2-1+b1_amd64.deb ... Unpacking python3-simplejson (3.19.2-1+b1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../045-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../046-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../047-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../048-python3-numpy_1%3a1.26.4+ds-8_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-8) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../049-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../050-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../051-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../052-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../053-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../054-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../055-libfontenc1_1%3a1.1.8-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../056-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../057-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../058-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../059-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../060-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../061-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../062-libxau6_1%3a1.0.9-1+b1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1+b1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../063-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../064-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../065-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../066-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../067-libx11-6_2%3a1.8.7-1+b1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../068-libxrender1_1%3a0.9.10-1.1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../069-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../070-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../071-libxss1_1%3a1.2.3-1+b1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../072-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../073-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. Preparing to unpack .../074-blt_2.5.3+dfsg-7_amd64.deb ... Unpacking blt (2.5.3+dfsg-7) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../075-python3-tk_3.12.3-1_amd64.deb ... Unpacking python3-tk:amd64 (3.12.3-1) ... Selecting previously unselected package python3-pil.imagetk:amd64. Preparing to unpack .../076-python3-pil.imagetk_10.3.0-2_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../077-libimagequant0_2.18.0-1+b1_amd64.deb ... Unpacking libimagequant0:amd64 (2.18.0-1+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../078-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../079-liblcms2-2_2.14-2+b1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2+b1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../080-libopenjp2-7_2.5.0-2+b3_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+b3) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../081-libfribidi0_1.0.13-3+b1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.13-3+b1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../082-libglib2.0-0t64_2.78.4-7_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.78.4-7) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../083-libgraphite2-3_1.3.14-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../084-libharfbuzz0b_8.3.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../085-libraqm0_0.10.1-1+b1_amd64.deb ... Unpacking libraqm0:amd64 (0.10.1-1+b1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../086-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../087-liblerc4_4.0.0+ds-4+b1_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-4+b1) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../089-libwebp7_1.3.2-0.4+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.3.2-0.4+b1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../090-libtiff6_4.5.1+git230720-4_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-4) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../091-libwebpdemux2_1.3.2-0.4+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../092-libwebpmux3_1.3.2-0.4+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.3.2-0.4+b1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../093-python3-pil_10.3.0-2_amd64.deb ... Unpacking python3-pil:amd64 (10.3.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../094-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../095-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../096-libxcb-shm0_1.15-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.15-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../097-libcairo2_1.18.0-3+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.0-3+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../098-python3-cairo_1.26.0-1_amd64.deb ... Unpacking python3-cairo (1.26.0-1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../099-python3-freetype_2.4.0-1_all.deb ... Unpacking python3-freetype (2.4.0-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../100-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../101-python3-reportlab_4.1.0-4_all.deb ... Unpacking python3-reportlab (4.1.0-4) ... Selecting previously unselected package xml-core. Preparing to unpack .../102-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../103-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../104-python3-biopython_1.83+dfsg1-2_amd64.deb ... Unpacking python3-biopython (1.83+dfsg1-2) ... Selecting previously unselected package python3-gffutils. Preparing to unpack .../105-python3-gffutils_0.13-1_all.deb ... Unpacking python3-gffutils (0.13-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../106-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../107-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../108-fonts-lyx_2.4.0~RC4-1_all.deb ... Unpacking fonts-lyx (2.4.0~RC4-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../109-python-matplotlib-data_3.6.3-2_all.deb ... Unpacking python-matplotlib-data (3.6.3-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../110-python3-six_1.16.0-6_all.deb ... Unpacking python3-six (1.16.0-6) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../111-python3-dateutil_2.9.0-2_all.deb ... Unpacking python3-dateutil (2.9.0-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../112-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../113-python3-contourpy_1.0.7-3_amd64.deb ... Unpacking python3-contourpy (1.0.7-3) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../114-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../115-python3-brotli_1.1.0-2+b3_amd64.deb ... Unpacking python3-brotli (1.1.0-2+b3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../116-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../117-liblbfgsb0_3.0+dfsg.4-1+b1_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../118-python3-scipy_1.11.4-6_amd64.deb ... Unpacking python3-scipy (1.11.4-6) ... Selecting previously unselected package python3-attr. Preparing to unpack .../119-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../120-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../121-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../122-python3-sympy_1.12-7_all.deb ... Unpacking python3-sympy (1.12-7) ... Selecting previously unselected package python3-tz. Preparing to unpack .../123-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../124-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-fs. Preparing to unpack .../125-python3-fs_2.4.16-4_all.deb ... Unpacking python3-fs (2.4.16-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../126-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../127-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../128-libxslt1.1_1.1.35-1+b1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1+b1) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../129-python3-lxml_5.1.0-1_amd64.deb ... Unpacking python3-lxml:amd64 (5.1.0-1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../130-python3-lz4_4.0.2+dfsg-1+b3_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b3) ... Selecting previously unselected package python3-unicodedata2. Preparing to unpack .../131-python3-unicodedata2_15.1.0+ds-1+b1_amd64.deb ... Unpacking python3-unicodedata2 (15.1.0+ds-1+b1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../132-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../133-python3-fonttools_4.46.0-1_amd64.deb ... Unpacking python3-fonttools (4.46.0-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../134-python3-kiwisolver_1.4.5-1_amd64.deb ... Unpacking python3-kiwisolver (1.4.5-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../135-python3-packaging_24.0-1_all.deb ... Unpacking python3-packaging (24.0-1) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../136-libqhull-r8.0_2020.2-6+b1_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-6+b1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../137-python3-matplotlib_3.6.3-2_amd64.deb ... Unpacking python3-matplotlib (3.6.3-2) ... Selecting previously unselected package bcftools. Preparing to unpack .../138-bcftools_1.20-1_amd64.deb ... Unpacking bcftools (1.20-1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../139-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../140-libcurl4t64_8.7.1-3_amd64.deb ... Unpacking libcurl4t64:amd64 (8.7.1-3) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../141-libjsoncpp25_1.9.5-6+b2_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../142-librhash0_1.4.3-3+b1_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../143-libuv1t64_1.48.0-1.1_amd64.deb ... Unpacking libuv1t64:amd64 (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../144-cmake-data_3.29.2-2_all.deb ... Unpacking cmake-data (3.29.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../145-cmake_3.29.2-2_amd64.deb ... Unpacking cmake (3.29.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../146-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../147-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../148-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../149-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../150-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../151-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../152-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../153-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../154-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../155-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../156-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../157-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../158-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../159-liblzma-dev_5.6.1+really5.4.5-1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Selecting previously unselected package libomp-jonathonl-dev. Preparing to unpack .../160-libomp-jonathonl-dev_1.0.0-1_amd64.deb ... Unpacking libomp-jonathonl-dev (1.0.0-1) ... Selecting previously unselected package libshrinkwrap-dev. Preparing to unpack .../161-libshrinkwrap-dev_1.2.0-2_all.deb ... Unpacking libshrinkwrap-dev (1.2.0-2) ... Selecting previously unselected package libsavvy-dev. Preparing to unpack .../162-libsavvy-dev_2.1.0-2_all.deb ... Unpacking libsavvy-dev (2.1.0-2) ... Selecting previously unselected package libstatgen1:amd64. Preparing to unpack .../163-libstatgen1_1.0.15-7_amd64.deb ... Unpacking libstatgen1:amd64 (1.0.15-7) ... Selecting previously unselected package libstatgen-dev:amd64. Preparing to unpack .../164-libstatgen-dev_1.0.15-7_amd64.deb ... Unpacking libstatgen-dev:amd64 (1.0.15-7) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../165-libzstd-dev_1.5.5+dfsg2-2_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.5+dfsg2-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../166-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up libstatgen1:amd64 (1.0.15-7) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libzstd-dev:amd64 (1.5.5+dfsg2-2) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libuv1t64:amd64 (1.48.0-1.1) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b1) ... Setting up libcom-err2:amd64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 9 13:38:17 UTC 2025. Universal Time is now: Mon Jun 9 13:38:17 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libshrinkwrap-dev (1.2.0-2) ... Setting up libglib2.0-0t64:amd64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libstatgen-dev:amd64 (1.0.15-7) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libomp-jonathonl-dev (1.0.0-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libsavvy-dev (2.1.0-2) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:amd64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up cmake (3.29.2-2) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-argcomplete (3.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-argh (0.31.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tk:amd64 (3.12.3-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.1.0-4) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pyfaidx (0.8.1.1-2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Setting up python3-gffutils (0.13-1) ... Setting up bcftools (1.20-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/minimac4-4.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimac4_4.1.6-1_source.changes dpkg-buildpackage: info: source package minimac4 dpkg-buildpackage: info: source version 4.1.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6' dh_auto_configure -- -DBUILD_TESTS=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTS=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minimac4-4.1.6 -B/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' make -f CMakeFiles/minimac4.dir/build.make CMakeFiles/minimac4.dir/depend make[3]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' cd /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minimac4-4.1.6 /build/reproducible-path/minimac4-4.1.6 /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/CMakeFiles/minimac4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' make -f CMakeFiles/minimac4.dir/build.make CMakeFiles/minimac4.dir/build make[3]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' [ 28%] Building CXX object CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o [ 28%] Building CXX object CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o [ 57%] Building CXX object CMakeFiles/minimac4.dir/src/recombination.cpp.o [ 57%] Building CXX object CMakeFiles/minimac4.dir/src/input_prep.cpp.o [ 71%] Building CXX object CMakeFiles/minimac4.dir/src/main.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -MF CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o.d -o CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/hidden_markov_model.cpp [ 85%] Building CXX object CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o -MF CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o.d -o CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/dosage_writer.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/input_prep.cpp.o -MF CMakeFiles/minimac4.dir/src/input_prep.cpp.o.d -o CMakeFiles/minimac4.dir/src/input_prep.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/input_prep.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/recombination.cpp.o -MF CMakeFiles/minimac4.dir/src/recombination.cpp.o.d -o CMakeFiles/minimac4.dir/src/recombination.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/recombination.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -MF CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o.d -o CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/unique_haplotype.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/main.cpp.o -MF CMakeFiles/minimac4.dir/src/main.cpp.o.d -o CMakeFiles/minimac4.dir/src/main.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/main.cpp [100%] Linking CXX executable minimac4 /usr/bin/cmake -E cmake_link_script CMakeFiles/minimac4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o CMakeFiles/minimac4.dir/src/input_prep.cpp.o CMakeFiles/minimac4.dir/src/recombination.cpp.o CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o CMakeFiles/minimac4.dir/src/main.cpp.o -o minimac4 -Wl,-Bstatic -lomp -Wl,-Bdynamic -llzma -lzstd -lz make[3]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' [100%] Built target minimac4 make[2]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: simple_test 1: Test command: /build/reproducible-path/minimac4-4.1.6/test/simple-test.sh "/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/minimac4" "m4_simple_test_output" "/build/reproducible-path/minimac4-4.1.6/test/input/ref_panel.vcf" "/build/reproducible-path/minimac4-4.1.6/test/input/tar_panel.vcf" 1: Working Directory: /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu 1: Test timeout computed to be: 10000000 test 2 Start 2: haploid_and_diploid_test 2: Test command: /build/reproducible-path/minimac4-4.1.6/test/simple-test.sh "/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/minimac4" "m4_haploid_and_diploid_test_output" "/build/reproducible-path/minimac4-4.1.6/test/input/ref_panel_with_haploid_sample.vcf" "/build/reproducible-path/minimac4-4.1.6/test/input/tar_panel_with_haploid_sample.vcf" 2: Working Directory: /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu 2: Test timeout computed to be: 10000000 1: /usr/bin/bcftools 2: /usr/bin/bcftools 2: minimac v4.1.6 2: 1: minimac v4.1.6 1: 2: Mean Compression Ratio: 0.770455 2: Min Compression Ratio: 0.590909 2: Max Compression Ratio: 0.95 1: Mean Compression Ratio: 0.820455 1: Min Compression Ratio: 0.590909 1: Max Compression Ratio: 1.05 2: minimac v4.1.6 2: 2: Imputing chr20:1-10009927 ... 2: Loading target haplotypes ... 2: Loading target haplotypes took 0 seconds 2: Loading reference haplotypes ... 2: Loading reference haplotypes took 0 seconds 2: Typed sites to imputed sites ratio: 0.903226 (28/31) 2: Running HMM with 1 threads ... 2: Completed 2 of 5 samples 2: Completed 4 of 5 samples 2: Completed 5 of 5 samples 2: Running HMM took 0 seconds 2: Writing temp files took 0 seconds 2: Merging temp files ... 2: Merging temp files took 0 seconds 2: 1: minimac v4.1.6 1: 1: Imputing chr20:1-10009927 ... 1: Loading target haplotypes ... 1: Loading target haplotypes took 0 seconds 1: Loading reference haplotypes ... 1: Loading reference haplotypes took 0 seconds 1: Typed sites to imputed sites ratio: 0.903226 (28/31) 1: Running HMM with 1 threads ... 2: Mean ER2: 1 2: 2: Total time for parsing input: 0 seconds 2: Total time for HMM: 0 seconds 2: Total time for writing output: 0 seconds 2: Total wall time (h:mm:ss): 0:00:00 1: Completed 2 of 5 samples 1: Completed 4 of 5 samples 1: Completed 5 of 5 samples 1: Running HMM took 0 seconds 1: Writing temp files took 0 seconds 1: Merging temp files ... 1: Merging temp files took 0 seconds 1: 1/2 Test #2: haploid_and_diploid_test ......... Passed 1.57 sec 1: Mean ER2: 1 1 1: 1: Total time for parsing input: 0 seconds 1: Total time for HMM: 0 seconds 1: Total time for writing output: 0 seconds 1: Total wall time (h:mm:ss): 0:00:00 2/2 Test #1: simple_test ...................... Passed 1.59 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 1.59 sec make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minimac4/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/minimac4-4.1.6/debian/minimac4 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minimac4-4.1.6 -B/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/minimac4-4.1.6/debian/minimac4/usr/bin/minimac4 make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'minimac4' in '../minimac4_4.1.6-1_amd64.deb'. dpkg-deb: building package 'minimac4-dbgsym' in '../minimac4-dbgsym_4.1.6-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minimac4_4.1.6-1_amd64.buildinfo dpkg-genchanges --build=binary -O../minimac4_4.1.6-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3135693 and its subdirectories I: Current time: Mon Jun 9 01:39:55 -12 2025 I: pbuilder-time-stamp: 1749476395 Tue May 7 07:16:57 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue May 7 07:16:57 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue May 7 07:23:59 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue May 7 07:23:59 UTC 2024 I: minimac4_4.1.6-1_amd64.changes: Format: 1.8 Date: Fri, 08 Dec 2023 13:14:00 +0100 Source: minimac4 Binary: minimac4 minimac4-dbgsym Architecture: amd64 Version: 4.1.6-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: minimac4 - Fast Imputation Based on State Space Reduction HMM Changes: minimac4 (4.1.6-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 560dae5a83f44a084a97a521208ec381449e0acf 5413412 minimac4-dbgsym_4.1.6-1_amd64.deb 0ce731bba2128dff32a4effc70a497e7aa2ab2f1 9885 minimac4_4.1.6-1_amd64.buildinfo 875c734af47836ac77d0929d0f4881944b64523a 251044 minimac4_4.1.6-1_amd64.deb Checksums-Sha256: 6a0454ad45bd5fe45cb0be84b94fe45089f59733a5e6b2453b47364b968f2f4a 5413412 minimac4-dbgsym_4.1.6-1_amd64.deb da722b1ed59cda435cba8c8d050691a9e323d4936d4fdab7cfa23cae66afded4 9885 minimac4_4.1.6-1_amd64.buildinfo 8148f9d15f93e317be42445dec93b08fa328f3ebb19927b17136e02525e775cf 251044 minimac4_4.1.6-1_amd64.deb Files: 72a15b8b8b6cfa7fcd14fb2817ed613f 5413412 debug optional minimac4-dbgsym_4.1.6-1_amd64.deb 1d64c8ab6d269de30db266de697d38de 9885 science optional minimac4_4.1.6-1_amd64.buildinfo ab8f066ed9d585402ba46cf933fb1daa 251044 science optional minimac4_4.1.6-1_amd64.deb Tue May 7 07:24:01 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_6-6913.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/minimac4_4.1.6-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/minimac4_4.1.6-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/minimac4_4.1.6-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/b1/minimac4_4.1.6-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UvBGtU3U/b2/minimac4_4.1.6-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.425s) 0.424s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.076s) 0.076s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 831ms CPU time consumed: 797ms Tue May 7 07:24:02 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue May 7 07:24:02 UTC 2024 I: minimac4 from trixie built successfully and reproducibly on amd64. Tue May 7 07:24:04 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 7 07:24:04 UTC 2024 I: Submitting 12K b1/minimac4_4.1.6-1_amd64.buildinfo.asc Tue May 7 07:24:05 UTC 2024 I: Submitting 12K b2/minimac4_4.1.6-1_amd64.buildinfo.asc Tue May 7 07:24:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 7 07:24:06 UTC 2024 I: Done submitting .buildinfo files. Tue May 7 07:24:06 UTC 2024 I: Removing signed minimac4_4.1.6-1_amd64.buildinfo.asc files: removed './b1/minimac4_4.1.6-1_amd64.buildinfo.asc' removed './b2/minimac4_4.1.6-1_amd64.buildinfo.asc'