Wed May 8 17:03:27 UTC 2024 I: starting to build minia/trixie/amd64 on jenkins on '2024-05-08 17:03' Wed May 8 17:03:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/19097/console.log Wed May 8 17:03:27 UTC 2024 I: Downloading source for trixie/minia=3.2.6-4 --2024-05-08 17:03:27-- http://deb.debian.org/debian/pool/main/m/minia/minia_3.2.6-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2253 (2.2K) [text/prs.lines.tag] Saving to: ‘minia_3.2.6-4.dsc’ 0K .. 100% 326M=0s 2024-05-08 17:03:27 (326 MB/s) - ‘minia_3.2.6-4.dsc’ saved [2253/2253] Wed May 8 17:03:27 UTC 2024 I: minia_3.2.6-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: minia Binary: minia Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha Version: 3.2.6-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Steffen Moeller Homepage: http://minia.genouest.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/minia Vcs-Git: https://salsa.debian.org/med-team/minia.git Testsuite: autopkgtest Testsuite-Triggers: bandage, python3, samtools Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libboost-dev, libgatbcore-dev, libhdf5-dev Package-List: minia deb science optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: 50f25910ed9f9fe83806d901f6a50d79dc7337fe 1048908 minia_3.2.6.orig.tar.gz 002fcbbde6e77a47e539a762cc7e98ba8d51e798 17320 minia_3.2.6-4.debian.tar.xz Checksums-Sha256: a201c5b479092617259cb1d5e0f0045b80c106e8e2aa9afe4834b4d3dd39ce78 1048908 minia_3.2.6.orig.tar.gz cd9488aada847dea3fe2f8fc7ab53dd6ff2ee53f0b66b48b0727972027af7b60 17320 minia_3.2.6-4.debian.tar.xz Files: 9e69160f5ba19735a1635d10302f6f2b 1048908 minia_3.2.6.orig.tar.gz 6ca2a85d6d36da1dabe215e9ad8f652f 17320 minia_3.2.6-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWADecRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFfQw/+IHYUIo5jtkJnQURPGkhYVFlWx6M2SKLw psMAKqcdnB+6gp3vacsWpgoXsIi3cQBRgR5EmULJp/D1kX/2ZPPlOUr+d8sTdLs5 XjXWA2PjoyhCF+QMjZzeEZLomP2V/NTvinq+zFU3AcPOLzwg7z6FxL73Hq0NTAeJ juJdyjPj+/jGTZKZ2EibWD/00Yd4XVPoFkiyn6nzwx8a/rOcLq4Jz9MTWqlKjI17 7tIHvD1n4ZIsYlUgQMKMS4CdVq0NRJ8FHE+Pre90xHg9xP+w1+il3+vLb4mEjBCA PH0vTzPQw33eM6o1WfIpIImmrp/vBl+I0Q1lee8OoBKg5RMF/3wtkdds0rwpfN3g S5Pc6Ie3FxziWOWrV30XFARqgEZt75lPIJEztICJSP/T4pd11RooZeTNdXdhv6rW Jhig4BlJZj0nio42O6mOQ/y8+hS+RiEFrCUP60yja7F7hj6GaSW4YTS/vJ2+Gd1c kpRRlzzKMsX6InxHWi29PJR9ArnQD9n9aK49lUtfXU2PcnqNOXI3uLzVtHLiaD1f RVkfZJJBIOpqFFnuTBchElIU3t4HPcrsvmIehBRacrRq1ObNxFJksYbUr3AIhY8v MnDT/IZZzkLJeEUSnuc+jfRVGuwRfenqDQdW4bllHoe3yg6rwaHYQ9Vq/rxnGR93 qljmBJ3xWD0= =Q++D -----END PGP SIGNATURE----- Wed May 8 17:03:27 UTC 2024 I: Checking whether the package is not for us Wed May 8 17:03:27 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed May 8 17:03:27 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed May 8 17:05:17 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 8 05:03:29 -12 2024 I: pbuilder-time-stamp: 1715187809 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minia_3.2.6-4.dsc] I: copying [./minia_3.2.6.orig.tar.gz] I: copying [./minia_3.2.6-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 09:16:23 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./minia_3.2.6-4.dsc: no acceptable signature found dpkg-source: info: extracting minia in minia-3.2.6 dpkg-source: info: unpacking minia_3.2.6.orig.tar.gz dpkg-source: info: unpacking minia_3.2.6-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_gatb-core.patch dpkg-source: info: applying link_libraries.patch dpkg-source: info: applying no_install_to_wrong_dir.patch dpkg-source: info: applying skip-rpath.patch dpkg-source: info: applying fix_path_in_tests.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying 0001-build_info.hpp.in-Patch-to-use-CMAKE_SYSTEM_NAME-ins.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4128509/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9b121d31ac894abcb9d7e03d0895d408' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4128509' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/pbuilderrc_rxZ4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/b1 --logfile b1/build.log minia_3.2.6-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4128509/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libboost-dev, libgatbcore-dev, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libgatbcore-dev; however: Package libgatbcore-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgatbcore-dev{a} libgatbcore3{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 62.1 MB of archives. After unpacking 425 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 bc amd64 1.07.1-4 [103 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 29 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 52 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 61 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-2.1+b1 [10.6 MB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.7.1-3 [547 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libgatbcore3 amd64 1.4.2+dfsg-13+b1 [1802 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libgatbcore-dev amd64 1.4.2+dfsg-13+b1 [3854 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Fetched 62.1 MB in 1s (47.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../02-readline-common_8.2-4_all.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package bc. Preparing to unpack .../19-bc_1.07.1-4_amd64.deb ... Unpacking bc (1.07.1-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../20-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../21-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... 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Setting up libgatbcore-dev:amd64 (1.4.2+dfsg-13+b1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libcurl4t64:amd64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up bc (1.07.1-4) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcurl4-openssl-dev:amd64 (8.7.1-3) ... Setting up cmake (3.29.2-2) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-3.3) ... Setting up debhelper (13.15.3) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/minia-3.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minia_3.2.6-4_source.changes dpkg-buildpackage: info: source package minia dpkg-buildpackage: info: source version 3.2.6-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/minia-3.2.6' dh_clean rm -f minia src/build_info.hpp rm -rf obj-x86_64-linux-gnu src/build_info.hpp make[1]: Leaving directory '/build/reproducible-path/minia-3.2.6' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minia-3.2.6 -B/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' make -f CMakeFiles/minia.dir/build.make CMakeFiles/minia.dir/depend make -f CMakeFiles/merci.dir/build.make CMakeFiles/merci.dir/depend make[3]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' cd /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minia-3.2.6 /build/reproducible-path/minia-3.2.6 /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu/CMakeFiles/minia.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' cd /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minia-3.2.6 /build/reproducible-path/minia-3.2.6 /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu/CMakeFiles/merci.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' make -f CMakeFiles/merci.dir/build.make CMakeFiles/merci.dir/build make[3]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' make -f CMakeFiles/minia.dir/build.make CMakeFiles/minia.dir/build make[3]: Entering directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' [ 16%] Building CXX object CMakeFiles/merci.dir/merci/merci.cpp.o /usr/bin/c++ -I/build/reproducible-path/minia-3.2.6/src -I/build/reproducible-path/minia-3.2.6/merci -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/merci.dir/merci/merci.cpp.o -MF CMakeFiles/merci.dir/merci/merci.cpp.o.d -o CMakeFiles/merci.dir/merci/merci.cpp.o -c /build/reproducible-path/minia-3.2.6/merci/merci.cpp [ 50%] Building CXX object CMakeFiles/minia.dir/src/main.cpp.o [ 50%] Building CXX object CMakeFiles/minia.dir/src/GraphSimplificationAttempts.cpp.o [ 66%] Building CXX object CMakeFiles/minia.dir/src/Minia.cpp.o /usr/bin/c++ -I/build/reproducible-path/minia-3.2.6/src -I/build/reproducible-path/minia-3.2.6/merci -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/minia.dir/src/main.cpp.o -MF CMakeFiles/minia.dir/src/main.cpp.o.d -o CMakeFiles/minia.dir/src/main.cpp.o -c /build/reproducible-path/minia-3.2.6/src/main.cpp /usr/bin/c++ -I/build/reproducible-path/minia-3.2.6/src -I/build/reproducible-path/minia-3.2.6/merci -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/minia.dir/src/GraphSimplificationAttempts.cpp.o -MF CMakeFiles/minia.dir/src/GraphSimplificationAttempts.cpp.o.d -o CMakeFiles/minia.dir/src/GraphSimplificationAttempts.cpp.o -c /build/reproducible-path/minia-3.2.6/src/GraphSimplificationAttempts.cpp /usr/bin/c++ -I/build/reproducible-path/minia-3.2.6/src -I/build/reproducible-path/minia-3.2.6/merci -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/minia.dir/src/Minia.cpp.o -MF CMakeFiles/minia.dir/src/Minia.cpp.o.d -o CMakeFiles/minia.dir/src/Minia.cpp.o -c /build/reproducible-path/minia-3.2.6/src/Minia.cpp [ 83%] Linking CXX executable bin/minia /usr/bin/cmake -E cmake_link_script CMakeFiles/minia.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/minia.dir/src/GraphSimplificationAttempts.cpp.o CMakeFiles/minia.dir/src/Minia.cpp.o CMakeFiles/minia.dir/src/main.cpp.o -o bin/minia -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lgatbcore -lhdf5 make[3]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' [ 83%] Built target minia [100%] Linking CXX executable bin/merci /usr/bin/cmake -E cmake_link_script CMakeFiles/merci.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/minia-3.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/merci.dir/merci/merci.cpp.o -o bin/merci -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lgatbcore -lhdf5 make[3]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' [100%] Built target merci make[2]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/minia-3.2.6/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minia/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minia/usr/bin/minia debian/minia/usr/bin/merci were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'minia-dbgsym' in '../minia-dbgsym_3.2.6-4_amd64.deb'. dpkg-deb: building package 'minia' in '../minia_3.2.6-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minia_3.2.6-4_amd64.buildinfo dpkg-genchanges --build=binary -O../minia_3.2.6-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4128509 and its subdirectories I: Current time: Wed May 8 05:05:17 -12 2024 I: pbuilder-time-stamp: 1715187917 Wed May 8 17:05:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed May 8 17:05:18 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed May 8 17:07:24 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed May 8 17:07:25 UTC 2024 I: minia_3.2.6-4_amd64.changes: Format: 1.8 Date: Mon, 18 Dec 2023 10:13:19 +0100 Source: minia Binary: minia minia-dbgsym Architecture: amd64 Version: 3.2.6-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: minia - short-read biological sequence assembler Closes: 1058903 Changes: minia (3.2.6-4) unstable; urgency=medium . * add build support for loongarch64 Closes: #1058903 Checksums-Sha1: cc09b41c87bc59e79c83edc08e68d229b5295e35 1194176 minia-dbgsym_3.2.6-4_amd64.deb bb0bfc4848af4131c7101a8b34d3c235f2d80bc8 6903 minia_3.2.6-4_amd64.buildinfo fb32873d93a8a8b03bb1351388f0c906e392662c 400184 minia_3.2.6-4_amd64.deb Checksums-Sha256: 0040eff98a81e60731f94f92e08f27b64e3e316492eb997f41a131d757b75c97 1194176 minia-dbgsym_3.2.6-4_amd64.deb 7273930d9f515a5e5fe78ff6aa80a230e2297438bd07a37504fff87fac6412dd 6903 minia_3.2.6-4_amd64.buildinfo b71a19488b053012dfd99acbe73ddf93b9db8d475bb78cd267f6fea1c3248b7e 400184 minia_3.2.6-4_amd64.deb Files: 98eeb66615fd8aeb69b3c973dedf7c5e 1194176 debug optional minia-dbgsym_3.2.6-4_amd64.deb 15293567c54fdb0b57e7a7a421256d91 6903 science optional minia_3.2.6-4_amd64.buildinfo f1733947711df5e45c36d9f2f90b32d0 400184 science optional minia_3.2.6-4_amd64.deb Wed May 8 17:07:26 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_23-19097.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/minia_3.2.6-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/minia_3.2.6-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/minia_3.2.6-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/b1/minia_3.2.6-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Y8Wp834A/b2/minia_3.2.6-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.385s) 0.385s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 722ms CPU time consumed: 722ms Wed May 8 17:07:27 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 17:07:27 UTC 2024 I: minia from trixie built successfully and reproducibly on amd64. Wed May 8 17:07:28 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 17:07:28 UTC 2024 I: Submitting 8.0K b1/minia_3.2.6-4_amd64.buildinfo.asc Wed May 8 17:07:32 UTC 2024 I: Submitting 8.0K b2/minia_3.2.6-4_amd64.buildinfo.asc Wed May 8 17:07:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 17:07:34 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 17:07:34 UTC 2024 I: Removing signed minia_3.2.6-4_amd64.buildinfo.asc files: removed './b1/minia_3.2.6-4_amd64.buildinfo.asc' removed './b2/minia_3.2.6-4_amd64.buildinfo.asc'