Thu May 9 23:24:36 UTC 2024 I: starting to build metaphlan/trixie/amd64 on jenkins on '2024-05-09 23:24' Thu May 9 23:24:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/7088/console.log Thu May 9 23:24:37 UTC 2024 I: Downloading source for trixie/metaphlan=4.0.4-1 --2024-05-09 23:24:37-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 292M=0s 2024-05-09 23:24:37 (292 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] Thu May 9 23:24:37 UTC 2024 I: metaphlan_4.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biobakery/MetaPhlAn Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Build-Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython Package-List: metaphlan deb science optional arch=all Checksums-Sha1: 6155334673fac2ac7b4957019f7f59438e5c0042 1891888 metaphlan_4.0.4.orig.tar.gz 42359168a4bd3c44441da28cad4ce600270bc190 458252 metaphlan_4.0.4-1.debian.tar.xz Checksums-Sha256: 3eccd2d76fd137cd113fb35700452aa215b5f0af32f4e1173c1db6366d0ac304 1891888 metaphlan_4.0.4.orig.tar.gz e70a8a0acf7e032cf217dadf9b8312ba40b4be3f344daae1fc80b8bb3fadb2a7 458252 metaphlan_4.0.4-1.debian.tar.xz Files: 3d9fb1e382d01e6f95879a05f449d364 1891888 metaphlan_4.0.4.orig.tar.gz 43d9caf26dd36d38b5653efd77be7d54 458252 metaphlan_4.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPadA8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfeA//eiKVPU5YiIy5zNhXLGq0ZALV2Uw/vwdq xY7TBN8EAuI3bVDamCRceM6UWYy0Hl+f1SY+NJ6CWHw87G9q7TAwDRHk0lFuAC6s GsjdcvxPM0xGu3ViUsVgiOGYVQS5Z4Rh1ZDJjaowU6JGW7yh7qGbS+zFh/WHUQRS xpkjviaQTK/0ZpTU/2pFtnsG4E9qZ7O1MC08oKByMxPsozTtYHA/hdSx5+iu/pl6 S1/WQ0qknq0FvozW1ts1IaY+D9+viAX+NKnOxz04n8Gnp8TQOIH97b/MKUGPc/bK +gUJ03qH4iOSReCJYHwi7Wz8+Cg8r0HIMhO9LaoWi/OpHXZLAI8FbFxkUwpl6fFq 7T0U7T6wbhMOedtNviXG/pM9Trvy8RoFmCfMwwFjnutzaL9XLqEoErCHcQKji/sk OBa+kIOTnSE7SFFDw+muKgBViF1HIwJ9zIUeVrKwIbvIeAXloQzuvYy2KdCZm9LR D9jw+ZhKyVjlDvfQ0BgRbkwqY/gMDiC7ffJ4KqWzE/sKDBmY6FwTQxo42BXnImmv tqM/DMsXjOUxDO8yCDl8GbEQttZc91oeQY7BtL4jMjgqIP6RqSc7/7vU6DKsyQUv cyLh0Ei86Cov1UUBwSLHHJx4Xi9HMXI6ljbveGefmaaKKuzxrsyWPsf2qh+c9Equ gRgrrCFC7yI= =Uzhz -----END PGP SIGNATURE----- Thu May 9 23:24:37 UTC 2024 I: Checking whether the package is not for us Thu May 9 23:24:37 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu May 9 23:24:37 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu May 9 23:29:11 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 11:24:39 -12 2024 I: pbuilder-time-stamp: 1715297079 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3530066/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2fa6752616004026aa9f25d9faa6dce4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3530066' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/pbuilderrc_hzQM --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3530066/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-distutils{a} python3-freetype{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 88.3 MB of archives. After unpacking 427 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.3-1 [1438 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.80.1-1 [1485 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 pandoc-data all 3.1.3-2 [445 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 pandoc amd64 3.1.3+ds-3 [24.3 MB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Fetched 88.3 MB in 1s (67.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sgml-base. 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Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 9 23:26:18 UTC 2024. Universal Time is now: Thu May 9 23:26:18 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.80.1-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up pandoc-data (3.1.3-2) ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pandoc (3.1.3+ds-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up bowtie2 (2.5.3-1) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.1.0-4) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11 creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/parallelisation.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/util_fun.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/external_exec.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/database_controller.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/consensus_markers.cpython-311.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-311.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-311.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:302: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:302: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3530066 and its subdirectories I: Current time: Thu May 9 11:29:10 -12 2024 I: pbuilder-time-stamp: 1715297350 Thu May 9 23:29:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu May 9 23:29:12 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu May 9 23:32:15 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu May 9 23:32:16 UTC 2024 I: metaphlan_4.0.4-1_amd64.changes: Format: 1.8 Date: Wed, 01 Feb 2023 15:09:53 +0100 Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Description: metaphlan - Metagenomic Phylogenetic Analysis Changes: metaphlan (4.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 1983f5e3780bbf4dd05d702e4a8428bfe138c92d 2009016 metaphlan_4.0.4-1_all.deb 137c5cfdc519688480eeb6c764fd3365126f3810 7203 metaphlan_4.0.4-1_amd64.buildinfo Checksums-Sha256: 912e873f97cbdb230c69310397806891f708aa97ceb5d71e0f97ff10b836e787 2009016 metaphlan_4.0.4-1_all.deb 55d24a62c02618765ca6d1bedd6985ea155a230c2fc18821b34df6f99964b5c8 7203 metaphlan_4.0.4-1_amd64.buildinfo Files: 1edbd472ccf650f02afd16a1dec64a35 2009016 science optional metaphlan_4.0.4-1_all.deb 085fe1b4fe6471f7a0a227a6b1fd17aa 7203 science optional metaphlan_4.0.4-1_amd64.buildinfo Thu May 9 23:32:17 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_13-7088.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/metaphlan_4.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/metaphlan_4.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/metaphlan_4.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/b1/metaphlan_4.0.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.uMM39Gqx/b2/metaphlan_4.0.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.377s) 0.377s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.035s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 705ms CPU time consumed: 705ms Thu May 9 23:32:18 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 23:32:18 UTC 2024 I: metaphlan from trixie built successfully and reproducibly on amd64. Thu May 9 23:32:19 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 23:32:19 UTC 2024 I: Submitting 8.0K b1/metaphlan_4.0.4-1_amd64.buildinfo.asc Thu May 9 23:32:20 UTC 2024 I: Submitting 8.0K b2/metaphlan_4.0.4-1_amd64.buildinfo.asc Thu May 9 23:32:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 23:32:21 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 23:32:21 UTC 2024 I: Removing signed metaphlan_4.0.4-1_amd64.buildinfo.asc files: removed './b1/metaphlan_4.0.4-1_amd64.buildinfo.asc' removed './b2/metaphlan_4.0.4-1_amd64.buildinfo.asc'