Mon May 13 23:51:44 UTC 2024 I: starting to build metabat/trixie/amd64 on jenkins on '2024-05-13 23:51' Mon May 13 23:51:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/11951/console.log Mon May 13 23:51:44 UTC 2024 I: Downloading source for trixie/metabat=2.15-4 --2024-05-13 23:51:45-- http://deb.debian.org/debian/pool/main/m/metabat/metabat_2.15-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) [text/prs.lines.tag] Saving to: ‘metabat_2.15-4.dsc’ 0K .. 100% 279M=0s 2024-05-13 23:51:45 (279 MB/s) - ‘metabat_2.15-4.dsc’ saved [2192/2192] Mon May 13 23:51:45 UTC 2024 I: metabat_2.15-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metabat Binary: metabat Architecture: any-amd64 any-i386 Version: 2.15-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/berkeleylab/metabat/wiki/Home Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/metabat Vcs-Git: https://salsa.debian.org/med-team/metabat.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3 Package-List: metabat deb science optional arch=any-amd64,any-i386,x32 Checksums-Sha1: d486fcd81dd4c7dc135a31825feac05ed83e44ae 195575 metabat_2.15.orig.tar.gz 72d730daae558c134e5fa4177761b189c5de464c 9780 metabat_2.15-4.debian.tar.xz Checksums-Sha256: 550487b66ec9b3bc53edf513d00c9deda594a584f53802165f037bde29b4d34e 195575 metabat_2.15.orig.tar.gz 7521be6fe28c25b9b53cb210caa9fe9c3fce60a95d358d963516ca464ef6c2b2 9780 metabat_2.15-4.debian.tar.xz Files: 61a8f6a1334e5367c428505edeb4305a 195575 metabat_2.15.orig.tar.gz 33848016ee6f38831d1e4e976a157cc9 9780 metabat_2.15-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1xXwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEghxAAg8xG+myf64yYREzYBSXVpjZAIZ6U56H6 kv6V7Q4zwXWzetddKWnkB+Cs8geLzZEMz9Ha3jkgiMowh1ggpCGRQ00gJ5UIlauJ 0JODA41e5mAb6yILR61T/VlPqohaAPF/CwlNVtCNthqr3sZZEYrSFPwQO7+dTUFq EX8Sz/DPHr7SnrAya9ta6YE5Y+6nv6oSo6pjGZtCVOmXD+tWT41phM/DlyFOYz0z oK/cBZLZWwHHKReWwW3DRnmOgtRyZ765ERWwW/r2IhCm9RQy4uuOD6t4aa1ZOnJb ym93QMkGboJT1j+F+iYi4LAMxx4Ej3UMWONqA4skawMONre2Rd7dB8XSc9VPkKQa Ro0nfo+JCAZPBPEaQYbHLmMsyb5QgU7J8uO8jZelljsxJ6BAbHPRCXH644DbyxOX XqaeBONYhONN6JbcO/+KLl33rppDaIsCvKCvTsAcG7jEqGa5RAXYMR/EaKUt0tBX UVwwffII8p7J6w91RnHU3T0UBC70rxIcFrbCUHBijDsSWrve0YVA/M2ZapGsBGqW /iCymSatNYfEAxFHbolPvDaSFtC3u5xJUBWlYEOFPZSXA+9OkvJ9H+jBOS8OBFuI AQtkMKgZc+mIdjaGk92SNaEsHEYZynkljGv1a8tA+KtkLmei6AddT8B62J4PUq2/ le5zlYfXpoU= =xFLg -----END PGP SIGNATURE----- Mon May 13 23:51:45 UTC 2024 I: Checking whether the package is not for us Mon May 13 23:51:45 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Mon May 13 23:51:45 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Mon May 13 23:53:53 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 11:51:47 -12 2024 I: pbuilder-time-stamp: 1715644307 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metabat_2.15-4.dsc] I: copying [./metabat_2.15.orig.tar.gz] I: copying [./metabat_2.15-4.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 16:19:08 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metabat_2.15-4.dsc: no acceptable signature found dpkg-source: info: extracting metabat in metabat-2.15 dpkg-source: info: unpacking metabat_2.15.orig.tar.gz dpkg-source: info: unpacking metabat_2.15-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2460067/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d739a4395f48408fbaf3db74f46c8478' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2460067' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/pbuilderrc_n5vE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/b1 --logfile b1/build.log metabat_2.15-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2460067/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 72.8 MB of archives. After unpacking 433 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 39 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-2.1+b1 [10.6 MB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-2.1+b1 [234 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-2.1+b1 [235 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-2.1+b1 [280 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-2.1+b1 [230 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-2.1+b1 [231 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-2.1+b1 [295 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 libboost-graph1.83.0 amd64 1.83.0-2.1+b1 [358 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-2.1+b1 [325 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-2.1+b1 [342 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-2.1+b1 [332 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-2.1+b1 [372 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libboost-test1.83.0 amd64 1.83.0-2.1+b1 [466 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libboost-test1.83-dev amd64 1.83.0-2.1+b1 [537 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libboost-graph1.83-dev amd64 1.83.0-2.1+b1 [383 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libboost-graph-dev amd64 1.83.0.2+b2 [3700 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-2.1+b1 [261 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 88 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-2.1+b1 [345 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-2.1+b1 [373 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 91 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 92 http://deb.debian.org/debian trixie/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 93 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.7.1-5 [538 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.19+ds-1.1+b1 [1667 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Fetched 72.8 MB in 1s (64.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20015 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../28-libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../29-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../30-libldap-2.5-0_2.5.17+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../31-libnghttp2-14_1.61.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../32-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../33-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../34-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../35-libcurl4t64_8.7.1-5_amd64.deb ... Unpacking libcurl4t64:amd64 (8.7.1-5) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../37-librhash0_1.4.3-3+b1_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../38-libuv1t64_1.48.0-1.1_amd64.deb ... Unpacking libuv1t64:amd64 (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.29.2-2_all.deb ... Unpacking cmake-data (3.29.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.29.2-2_amd64.deb ... Unpacking cmake (3.29.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../45-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../46-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../47-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../48-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../49-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../50-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../51-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../52-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../53-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../54-icu-devtools_72.1-4+b1_amd64.deb ... Unpacking icu-devtools (72.1-4+b1) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../55-libboost1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-atomic1.83.0:amd64. Preparing to unpack .../56-libboost-atomic1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-atomic1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-atomic1.83-dev:amd64. Preparing to unpack .../57-libboost-atomic1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-atomic1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-filesystem1.83.0:amd64. Preparing to unpack .../58-libboost-filesystem1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-filesystem1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-system1.83.0:amd64. Preparing to unpack .../59-libboost-system1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-system1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-system1.83-dev:amd64. Preparing to unpack .../60-libboost-system1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-system1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-filesystem1.83-dev:amd64. Preparing to unpack .../61-libboost-filesystem1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-filesystem1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-filesystem-dev:amd64. Preparing to unpack .../62-libboost-filesystem-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-graph1.83.0:amd64. Preparing to unpack .../63-libboost-graph1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-graph1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-regex1.83.0:amd64. Preparing to unpack .../64-libboost-regex1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-regex1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../65-libicu-dev_72.1-4+b1_amd64.deb ... Unpacking libicu-dev:amd64 (72.1-4+b1) ... Selecting previously unselected package libboost-regex1.83-dev:amd64. Preparing to unpack .../66-libboost-regex1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-regex1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-serialization1.83.0:amd64. Preparing to unpack .../67-libboost-serialization1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-serialization1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-serialization1.83-dev:amd64. Preparing to unpack .../68-libboost-serialization1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-serialization1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-test1.83.0:amd64. Preparing to unpack .../69-libboost-test1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-test1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-test1.83-dev:amd64. Preparing to unpack .../70-libboost-test1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-test1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-graph1.83-dev:amd64. Preparing to unpack .../71-libboost-graph1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-graph1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-graph-dev:amd64. Preparing to unpack .../72-libboost-graph-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-graph-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-iostreams1.83-dev:amd64. Preparing to unpack .../73-libboost-iostreams1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-iostreams1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-iostreams-dev:amd64. Preparing to unpack .../74-libboost-iostreams-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:amd64. Preparing to unpack .../75-libboost-program-options1.83.0_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-program-options1.83.0:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-program-options1.83-dev:amd64. Preparing to unpack .../76-libboost-program-options1.83-dev_1.83.0-2.1+b1_amd64.deb ... Unpacking libboost-program-options1.83-dev:amd64 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-program-options-dev:amd64. Preparing to unpack .../77-libboost-program-options-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-serialization-dev:amd64. Preparing to unpack .../78-libboost-serialization-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-system-dev:amd64. Preparing to unpack .../79-libboost-system-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-system-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../80-libcurl3t64-gnutls_8.7.1-5_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.7.1-5) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../81-libcurl4-gnutls-dev_8.7.1-5_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.7.1-5) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../82-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../83-libdeflate-dev_1.20-1_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.20-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../84-libhtscodecs2_1.6.0-1+b1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.0-1+b1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../85-libhts3t64_1.19+ds-1.1+b1_amd64.deb ... Unpacking libhts3t64:amd64 (1.19+ds-1.1+b1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../86-liblzma-dev_5.6.1+really5.4.5-1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../87-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../88-libhts-dev_1.19+ds-1.1+b1_amd64.deb ... Unpacking libhts-dev:amd64 (1.19+ds-1.1+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../89-libpkgconf3_1.8.1-1+b2_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1+b2) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../90-pkgconf-bin_1.8.1-1+b2_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1+b2) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../91-pkgconf_1.8.1-1+b2_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1+b2) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../92-pkg-config_1.8.1-1+b2_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1+b2) ... Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libboost-program-options1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libboost1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libboost-system1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libuv1t64:amd64 (1.48.0-1.1) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libboost-filesystem1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon May 13 23:53:08 UTC 2024. Universal Time is now: Mon May 13 23:53:08 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libboost-test1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libboost-graph1.83.0:amd64 (1.83.0-2.1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libdeflate-dev:amd64 (1.20-1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:amd64 (72.1-4+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libboost-test1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up pkgconf:amd64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-5) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libcurl4-gnutls-dev:amd64 (8.7.1-5) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-graph1.83-dev:amd64 (1.83.0-2.1+b1) ... Setting up cmake (3.29.2-2) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libboost-graph-dev:amd64 (1.83.0.2+b2) ... Setting up python3.11 (3.11.9-1) ... Setting up libhts-dev:amd64 (1.19+ds-1.1+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metabat-2.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metabat_2.15-4_source.changes dpkg-buildpackage: info: source package metabat dpkg-buildpackage: info: source version 2.15-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Installing None MetaBAT into /usr -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'htslib' -- Found htslib, version 1.19 -- Found Boost: /usr/include (found suitable version "1.83.0", minimum required is "1.55.0") found components: program_options filesystem system graph serialization iostreams regex -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Using OpenMP Boost cmake dir: Boost include: /usr/include Boost libraries:/usr/lib/x86_64-linux-gnu/libboost_program_options.a/usr/lib/x86_64-linux-gnu/libboost_filesystem.a/usr/lib/x86_64-linux-gnu/libboost_system.a/usr/lib/x86_64-linux-gnu/libboost_graph.a/usr/lib/x86_64-linux-gnu/libboost_serialization.a/usr/lib/x86_64-linux-gnu/libboost_iostreams.a/usr/lib/x86_64-linux-gnu/libboost_regex.a Boost lib ver:1_83 Boost lib dir:/usr/lib/x86_64-linux-gnu -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metabat-2.15 -B/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/depend make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/depend make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/depend make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metabat-2.15 /build/reproducible-path/metabat-2.15/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metabat-2.15 /build/reproducible-path/metabat-2.15/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metabat-2.15 /build/reproducible-path/metabat-2.15/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metabat-2.15 /build/reproducible-path/metabat-2.15/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/contigOverlaps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/build make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/build make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o [ 25%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu -I/build/reproducible-path/metabat-2.15 -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -MF CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o.d -o CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -c /build/reproducible-path/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu -I/build/reproducible-path/metabat-2.15 -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat1.dir/metabat1.cpp.o -MF CMakeFiles/metabat1.dir/metabat1.cpp.o.d -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /build/reproducible-path/metabat-2.15/src/metabat1.cpp [ 37%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu -I/build/reproducible-path/metabat-2.15 -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -MF CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o.d -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /build/reproducible-path/metabat-2.15/src/contigOverlaps.cpp [ 50%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu -I/build/reproducible-path/metabat-2.15 -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -MD -MT src/CMakeFiles/metabat2.dir/metabat2.cpp.o -MF CMakeFiles/metabat2.dir/metabat2.cpp.o.d -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /build/reproducible-path/metabat-2.15/src/metabat2.cpp In file included from /usr/include/boost/math/policies/error_handling.hpp:11, from /usr/include/boost/math/distributions/detail/common_error_handling.hpp:12, from /usr/include/boost/math/distributions/arcsine.hpp:35, from /usr/include/boost/math/distributions.hpp:15, from /build/reproducible-path/metabat-2.15/src/metabat1.h:40, from /build/reproducible-path/metabat-2.15/src/metabat1.cpp:1: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/policies/error_handling.hpp:11, from /usr/include/boost/math/distributions/detail/common_error_handling.hpp:12, from /usr/include/boost/math/distributions/arcsine.hpp:35, from /usr/include/boost/math/distributions.hpp:15, from /build/reproducible-path/metabat-2.15/src/metabat2.h:45, from /build/reproducible-path/metabat-2.15/src/metabat2.cpp:1: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /build/reproducible-path/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/reproducible-path/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/reproducible-path/metabat-2.15/src/BamUtils.h: In member function ‘bam1_t* BamCache::getBam(const bam1_t*)’: /build/reproducible-path/metabat-2.15/src/BamUtils.h:98:34: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 98 | bam_copy1(bam, copy); | ~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/metabat-2.15/src/BamUtils.h: In member function ‘NameBamMap::iterator NameBamMap::insert(std::string, const bam1_t*, bool)’: /build/reproducible-path/metabat-2.15/src/BamUtils.h:271:42: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 271 | bam_copy1(existing->second, bam); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/metabat-2.15/src/BamUtils.h: In static member function ‘static int BamUtils::_findPairInFile(const bam1_t*, void*)’: /build/reproducible-path/metabat-2.15/src/BamUtils.h:582:34: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 582 | bam_copy1(data->mate, orphan); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 62%] Linking CXX executable contigOverlaps cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/contigOverlaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -o contigOverlaps -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a /build/reproducible-path/metabat-2.15/src/metabat1.h:207:55: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 207 | template struct pair_equal_to: std::binary_function, bool> { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/metabat-2.15/src/metabat1.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' [ 62%] Built target contigOverlaps /build/reproducible-path/metabat-2.15/src/metabat1.cpp: In function ‘void pam_loop(int, ContigVector&, std::vector&, ContigSet&, ClassMap&)’: /build/reproducible-path/metabat-2.15/src/metabat1.cpp:1463:85: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = pair_equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1463 | medoid_vals[i] = std::find_if(rABD.begin(), rABD.end(), std::bind1st(pair_equal_to(),medoid_ids[i]))->second; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 75%] Linking CXX executable jgi_summarize_bam_contig_depths cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/jgi_summarize_bam_contig_depths.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -o jgi_summarize_bam_contig_depths -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' [ 75%] Built target jgi_summarize_bam_contig_depths [ 87%] Linking CXX executable metabat2 cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat2.dir/metabat2.cpp.o -o metabat2 -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' [ 87%] Built target metabat2 [100%] Linking CXX executable metabat1 cd /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/metabat-2.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat1.dir/metabat1.cpp.o -o metabat1 -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' [100%] Built target metabat1 make[2]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/metabat-2.15' cp -a test/contigs_depth.txt obj-x86_64-linux-gnu dh_auto_test cd obj-x86_64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[2]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_depths 1: Test command: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/jgi_summarize_bam_contig_depths "--referenceFasta" "/build/reproducible-path/metabat-2.15/test/contigs.fa" "--outputDepth" "/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt" "/build/reproducible-path/metabat-2.15/test/contigs-1000.fastq.bam" 1: Working Directory: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/test 1: Test timeout computed to be: 10000000 test 2 Start 2: test_metabat1 2: Test command: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/metabat1 "--inFile" "/build/reproducible-path/metabat-2.15/test/contigs.fa" "--abdFile" "/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt" "--outFile" "/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_bins" "-v" 2: Working Directory: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/test 2: Test timeout computed to be: 10000000 test 3 Start 3: test_metabat2 3: Test command: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/src/metabat2 "--inFile" "/build/reproducible-path/metabat-2.15/test/contigs.fa" "--abdFile" "/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt" "--outFile" "/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_bins" "-v" 3: Working Directory: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/test 3: Test timeout computed to be: 10000000 1: Reference fasta file /build/reproducible-path/metabat-2.15/test/contigs.fa 1: Output depth matrix to /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 1: jgi_summarize_bam_contig_depths nosha 1: Output matrix to /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 1: Reading reference fasta file: /build/reproducible-path/metabat-2.15/test/contigs.fa 1: ... 1 sequences 2: MetaBAT 1 (nosha) using p1 90.0%, p2 90.0%, p3 95.0%, minProb 80.0%, minBinned 40%, minCV 1.0, minContig 2500, minContigByCorr 1000, minCorr 92%, paired 0, and 20 bootstrapping 2: [00:00:00] Finished reading 1 contigs. Number of target contigs >= 2500 are 1, and [1000 and 2500) are 0 2: [00:00:00] Finished reading 1 contigs (using 1 including 0 short contigs) and 1 coverages from /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 2: [Info] Correlation binning won't be applied since the number of samples (1) < minSamples (10) 3: MetaBAT 2 (nosha) using minContig 2500, minCV 1.0, minCVSum 1.0, maxP 95%, minS 60, maxEdges 200 and minClsSize 200000. with random seed=1715644420 3: [00:00:00] Executing with 12 threads 3: [00:00:00] Parsing abundance file 3: [00:00:00] Parsing assembly file 3: [00:00:00] Number of large contigs >= 2500 are 1. 3: [00:00:00] Reading abundance file 3: [00:00:00] Finished reading 1 contigs and 1 coverages from /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 3: [00:00:00] Number of target contigs: 1 of large (>= 2500) and 0 of small ones (>=1000 & <2500). 1: 0: Opening bam: /build/reproducible-path/metabat-2.15/test/contigs-1000.fastq.bam 2: [00:00:00] Finished TNF calculation. 1: Processing bam files 1: Thread 0 finished: contigs-1000.fastq.bam with 1000 reads and 1000 readsWellMapped 1: Creating depth matrix file: /build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu/contigs_depth.txt 1: Closing most bam files 1: Closing last bam file 1: Finished 2: [00:00:00] Finished building a probabilistic graph. (1 vertices and 0 edges) 3: [00:00:00] Start TNF calculation. nobs = 1 1/3 Test #1: test_depths ...................... Passed 0.07 sec 3: [00:00:00] Calculating TNF 100.0% (1 of 1), ETA 0:00:00 [00:00:00] Finished TNF calculation. 2: [00:00:00] Bootstrapping 1/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 2/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 3/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 4/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 5/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 6/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 7/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 8/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 9/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 10/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 11/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 12/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 13/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 14/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 15/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 16/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 17/20 [-14.0Gb / 23.5Gb] [00:00:00] Bootstrapping 18/20 [-14.0Gb / 23.5Gb] [00:00:01] Bootstrapping 19/20 [-14.0Gb / 23.5Gb] [00:00:01] Bootstrapping 20/20 [-14.0Gb / 23.5Gb] [00:00:01] Bootstrapping 20/20 [-14.0Gb / 23.5Gb] 2: [00:00:01] Saved bootstrap intermediate file (boot.6018994539096241237) for reuse in case of failure 2: [00:00:01] Building Ensemble Graph 0.0% (0 of 1), ETA -2562047788015215:-30:-8 [-14.0Gb / 23.5Gb] [00:00:01] Finished Ensemble Graph (1 vertices and 0 edges) [-14.0Gb / 23.5Gb] 2: [00:00:01] Starting Ensemble Binning [-14.0Gb / 23.5Gb] 2: [00:00:01] Running Ensemble Binning [-14.0Gb / 23.5Gb] [00:00:01] Running Ensemble Binning 1 [-14.0Gb / 23.5Gb] [00:00:01] Running Ensemble Binning 1 [-14.0Gb / 23.5Gb] 2: [00:00:01] Finished Ensemble Binning [-14.0Gb / 23.5Gb] 2: [00:00:01] Cleaned up intermediate files 2: [00:00:01] 0.00% (0 out of 5404 bases) was binned. 2: Number of clusters formed: 0 2/3 Test #2: test_metabat1 .................... Passed 1.13 sec 3: [00:00:00] Preparing TNF Graph Building [pTNF = 99.9; 0 / 1 (P = 0.00%) round 1] [00:00:00] Preparing TNF Graph Building [pTNF = 99.8; 0 / 1 (P = 0.00%) round 2] [00:00:00] Preparing TNF Graph Building [pTNF = 99.5; 0 / 1 (P = 0.00%) round 3] [00:00:00] Preparing TNF Graph Building [pTNF = 99.3; 0 / 1 (P = 0.00%) round 4] [00:00:00] Preparing TNF Graph Building [pTNF = 99.1; 0 / 1 (P = 0.00%) round 5] [00:00:00] Preparing TNF Graph Building [pTNF = 98.9; 0 / 1 (P = 0.00%) round 6] [00:00:00] Preparing TNF Graph Building [pTNF = 98.5; 0 / 1 (P = 0.00%) round 7] [00:00:00] Preparing TNF Graph Building [pTNF = 98.0; 0 / 1 (P = 0.00%) round 8] [00:00:00] Preparing TNF Graph Building [pTNF = 97.6; 0 / 1 (P = 0.00%) round 9] [00:00:00] Preparing TNF Graph Building [pTNF = 97.1; 0 / 1 (P = 0.00%) round 10] [00:00:00] Preparing TNF Graph Building [pTNF = 96.6; 0 / 1 (P = 0.00%) round 11] [00:00:00] Preparing TNF Graph Building [pTNF = 96.1; 0 / 1 (P = 0.00%) round 12] [00:00:00] Preparing TNF Graph Building [pTNF = 95.6; 0 / 1 (P = 0.00%) round 13] [00:00:00] Preparing TNF Graph Building [pTNF = 95.2; 0 / 1 (P = 0.00%) round 14] [00:00:00] Preparing TNF Graph Building [pTNF = 94.8; 0 / 1 (P = 0.00%) round 15] [00:00:00] Preparing TNF Graph Building [pTNF = 94.5; 0 / 1 (P = 0.00%) round 16] [00:00:00] Preparing TNF Graph Building [pTNF = 94.2; 0 / 1 (P = 0.00%) round 17] [00:00:00] Preparing TNF Graph Building [pTNF = 93.7; 0 / 1 (P = 0.00%) round 18] [00:00:00] Preparing TNF Graph Building [pTNF = 93.2; 0 / 1 (P = 0.00%) round 19] [00:00:00] Preparing TNF Graph Building [pTNF = 92.7; 0 / 1 (P = 0.00%) round 20] [00:00:00] Preparing TNF Graph Building [pTNF = 92.3; 0 / 1 (P = 0.00%) round 21] [00:00:00] Preparing TNF Graph Building [pTNF = 91.9; 0 / 1 (P = 0.00%) round 22] [00:00:00] Preparing TNF Graph Building [pTNF = 91.4; 0 / 1 (P = 0.00%) round 23] [00:00:00] Preparing TNF Graph Building [pTNF = 91.1; 0 / 1 (P = 0.00%) round 24] [00:00:00] Preparing TNF Graph Building [pTNF = 90.6; 0 / 1 (P = 0.00%) round 25] [00:00:00] Preparing TNF Graph Building [pTNF = 90.1; 0 / 1 (P = 0.00%) round 26] [00:00:00] Preparing TNF Graph Building [pTNF = 89.6; 0 / 1 (P = 0.00%) round 27] [00:00:00] Preparing TNF Graph Building [pTNF = 88.7; 0 / 1 (P = 0.00%) round 28] [00:00:01] Preparing TNF Graph Building [pTNF = 87.6; 0 / 1 (P = 0.00%) round 29] [00:00:01] Preparing TNF Graph Building [pTNF = 86.6; 0 / 1 (P = 0.00%) round 30] [00:00:01] Preparing TNF Graph Building [pTNF = 85.5; 0 / 1 (P = 0.00%) round 31] [00:00:01] Preparing TNF Graph Building [pTNF = 84.6; 0 / 1 (P = 0.00%) round 32] [00:00:01] Preparing TNF Graph Building [pTNF = 83.5; 0 / 1 (P = 0.00%) round 33] [00:00:01] Preparing TNF Graph Building [pTNF = 82.4; 0 / 1 (P = 0.00%) round 34] [00:00:01] Preparing TNF Graph Building [pTNF = 81.3; 0 / 1 (P = 0.00%) round 35] [00:00:01] Preparing TNF Graph Building [pTNF = 80.4; 0 / 1 (P = 0.00%) round 36] [00:00:01] Preparing TNF Graph Building [pTNF = 79.3; 0 / 1 (P = 0.00%) round 37] [00:00:01] Preparing TNF Graph Building [pTNF = 78.3; 0 / 1 (P = 0.00%) round 38] [00:00:01] Preparing TNF Graph Building [pTNF = 77.4; 0 / 1 (P = 0.00%) round 39] [00:00:01] Preparing TNF Graph Building [pTNF = 76.5; 0 / 1 (P = 0.00%) round 40] [00:00:01] Preparing TNF Graph Building [pTNF = 75.6; 0 / 1 (P = 0.00%) round 41] [00:00:01] Preparing TNF Graph Building [pTNF = 74.5; 0 / 1 (P = 0.00%) round 42] [00:00:01] Preparing TNF Graph Building [pTNF = 73.6; 0 / 1 (P = 0.00%) round 43] [00:00:01] Preparing TNF Graph Building [pTNF = 72.7; 0 / 1 (P = 0.00%) round 44] [00:00:01] Preparing TNF Graph Building [pTNF = 71.7; 0 / 1 (P = 0.00%) round 45] [00:00:01] Preparing TNF Graph Building [pTNF = 70.6; 0 / 1 (P = 0.00%) round 46] [00:00:01] Finished Preparing TNF Graph Building [pTNF = 69.50] 3: [00:00:01] Building TNF Graph 8900.0% (89 of 1), ETA 0:00:00 [-14.0Gb / 23.5Gb] [00:00:01] Finished Building TNF Graph (0 edges) [-14.0Gb / 23.5Gb] 3: No edges were formed by TNF. 3: [00:00:01] Rescuing singleton large contigs 3: [00:00:01] There are 0 bins already 3: [00:00:01] Outputting bins 3: [00:00:01] -nan% (0 bases) of large (>=2500) and 0.00% (0 bases) of small (<2500) contigs were binned. 3: 0 bins (0 bases in total) formed. 3: [00:00:01] Finished 3/3 Test #3: test_metabat2 .................... Passed 1.38 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.38 sec make[2]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/metabat-2.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metabat/ cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/metabat-2.15/debian/metabat AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metabat-2.15 -B/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/runMetaBat.sh -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/merge_depths.pl -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/aggregateBinDepths.pl -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/aggregateContigOverlapsByBin.pl CMake Error: failed to create symbolic link '/usr/bin/metabat': Permission denied -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/metabat1 -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/metabat2 -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/jgi_summarize_bam_contig_depths -- Installing: /build/reproducible-path/metabat-2.15/debian/metabat/usr/bin/contigOverlaps make[1]: Leaving directory '/build/reproducible-path/metabat-2.15/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/metabat-2.15' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/reproducible-path/metabat-2.15' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/metabat-2.15' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/metabat-2.15' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'metabat' in '../metabat_2.15-4_amd64.deb'. dpkg-deb: building package 'metabat-dbgsym' in '../metabat-dbgsym_2.15-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../metabat_2.15-4_amd64.buildinfo dpkg-genchanges --build=binary -O../metabat_2.15-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2460067 and its subdirectories I: Current time: Mon May 13 11:53:52 -12 2024 I: pbuilder-time-stamp: 1715644432 Mon May 13 23:53:54 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Mon May 13 23:53:54 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Mon May 13 23:56:00 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Mon May 13 23:56:01 UTC 2024 I: metabat_2.15-4_amd64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 18:15:48 +0200 Source: metabat Binary: metabat metabat-dbgsym Architecture: amd64 Version: 2.15-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metabat - robust statistical framework for reconstructing genomes from meta Changes: metabat (2.15-4) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 00e6d5c6e803d6ff37260a30c84fc3350c4c525d 3753544 metabat-dbgsym_2.15-4_amd64.deb 07e3ee125d2ca9fb7727a4f7aad8cfb4dc787b1e 7986 metabat_2.15-4_amd64.buildinfo 34215087cc93fafe1a80629d275938327173f818 520748 metabat_2.15-4_amd64.deb Checksums-Sha256: bafc909feb7a939327e5c4424f7afd04018c50e5b108e87eaffaa54e2e113f96 3753544 metabat-dbgsym_2.15-4_amd64.deb 8ed9f434faef04f641bd547ff4b50efbd14d60447b5dccb1382b74984c340a26 7986 metabat_2.15-4_amd64.buildinfo 2e7d93e86a0af3e7618872995ceff12636c12e913e87dc2dbff5703b3d3d06bc 520748 metabat_2.15-4_amd64.deb Files: 5f5cd068c91c916504a7b386742c55cb 3753544 debug optional metabat-dbgsym_2.15-4_amd64.deb 30df8446429278776e12f542fc7401c6 7986 science optional metabat_2.15-4_amd64.buildinfo 5f0efb67ecde1882a2b08bca0e75d1ef 520748 science optional metabat_2.15-4_amd64.deb Mon May 13 23:56:02 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-11951.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/metabat_2.15-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/metabat_2.15-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/metabat_2.15-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/b1/metabat_2.15-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FRDtiYXy/b2/metabat_2.15-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.413s) 0.413s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.060s) 0.060s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 767ms CPU time consumed: 766ms Mon May 13 23:56:03 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Mon May 13 23:56:03 UTC 2024 I: metabat from trixie built successfully and reproducibly on amd64. Mon May 13 23:56:04 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 13 23:56:04 UTC 2024 I: Submitting 12K b1/metabat_2.15-4_amd64.buildinfo.asc Mon May 13 23:56:05 UTC 2024 I: Submitting 12K b2/metabat_2.15-4_amd64.buildinfo.asc Mon May 13 23:56:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 13 23:56:06 UTC 2024 I: Done submitting .buildinfo files. Mon May 13 23:56:06 UTC 2024 I: Removing signed metabat_2.15-4_amd64.buildinfo.asc files: removed './b1/metabat_2.15-4_amd64.buildinfo.asc' removed './b2/metabat_2.15-4_amd64.buildinfo.asc'