Tue Apr 30 14:17:46 UTC 2024 I: starting to build libpll/trixie/amd64 on jenkins on '2024-04-30 14:17' Tue Apr 30 14:17:46 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/8615/console.log Tue Apr 30 14:17:46 UTC 2024 I: Downloading source for trixie/libpll=0.3.2-5 --2024-04-30 14:17:46-- http://deb.debian.org/debian/pool/main/libp/libpll/libpll_0.3.2-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2086 (2.0K) [text/prs.lines.tag] Saving to: ‘libpll_0.3.2-5.dsc’ 0K .. 100% 235M=0s 2024-04-30 14:17:46 (235 MB/s) - ‘libpll_0.3.2-5.dsc’ saved [2086/2086] Tue Apr 30 14:17:46 UTC 2024 I: libpll_0.3.2-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpll Binary: libpll0, libpll-dev Architecture: any Version: 0.3.2-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.libpll.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libpll Vcs-Git: https://salsa.debian.org/med-team/libpll.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive Package-List: libpll-dev deb libdevel optional arch=any libpll0 deb libs optional arch=any Checksums-Sha1: fac5db76dbc6a9582d9342f078ae7af925830ea8 2237460 libpll_0.3.2.orig.tar.gz 46e15a26db3a6fe9148818d73d711117507d6f19 238476 libpll_0.3.2-5.debian.tar.xz Checksums-Sha256: 45107d59d87be921c522478bb3688beee60dc79154e0b4a183af01122c597132 2237460 libpll_0.3.2.orig.tar.gz a19f40d2c2b0de7b33a6f56970bf5e64c6df49a57526f4208439454b449ed112 238476 libpll_0.3.2-5.debian.tar.xz Files: ee62af658af8aaf9c68af75e7714e055 2237460 libpll_0.3.2.orig.tar.gz 271e25f36e33993310e95fa6e09fb389 238476 libpll_0.3.2-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV7HmMWHGVtb2xsaWVy QGVtbHdrczk5OS5ldQAKCRB5PPZ+jw0R2hevD/wLeNC5d4nbFIPsTLXK+B4SbYe1 zefSqtqCbg2UDSyPMinupQ0ojGWMC4GPyZ2lXZZIH63efMLN5Hl7S1tzckEZ3SCn smbqXdqNgKGq0xhjxKdYB+fux9yKUINWTELsnidgRVswhoI1sbaUvPVQsQqWDvyi ocpq5vfaM+FVS1MfZGIHzrBZmsji8LOHutKSFezQX55OPhle0qOTgEHIXDGvCDEG SPhTeFykm8IByYxUscPucKHT0PdNq02M6mH5HLbc+H+YuxHXNgnGLrNUhWVSEj+I gXYMgcOcpbBigl/GHkF4cF7RH/LITg6TBFfZgm+FG6GiyqNw1xA/sb++qBOsinDX opZfEvGTYqM4IAm6SxbHHOoFM1KPigKByD6hT/KzDPkELWJsUeBa3SiB+xnhbNmf dUir04mcup5QDapbtIRAFr8X8qPtjVktbxjSPclZxk+PvogigrSzSw1dHhXTNGgw LbKzKdCLlwhS4VfJ0xtD4HFbngWksKVOyxOh8MnfDo7CJWaiRs2qGqwSmg5wz8c7 sExIG6Y9AjJFirQ1kGMQTaf9dcR0TCi7OmtOA8dZIWklz/4qRPNs4ujV3v8hkwgd oTHXuxZDkK2JgxL0HGyD1lzyb1dVYo/0ljvTUJFdyyllvJ9doZegdvqjA8KXsChG zSnJmsX/hzR2a2ksdg== =wcMj -----END PGP SIGNATURE----- Tue Apr 30 14:17:46 UTC 2024 I: Checking whether the package is not for us Tue Apr 30 14:17:46 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Tue Apr 30 14:17:46 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Tue Apr 30 14:18:49 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 30 02:17:49 -12 2024 I: pbuilder-time-stamp: 1714486669 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpll_0.3.2-5.dsc] I: copying [./libpll_0.3.2.orig.tar.gz] I: copying [./libpll_0.3.2-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 14 15:25:23 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpll_0.3.2-5.dsc: no acceptable signature found dpkg-source: info: extracting libpll in libpll-0.3.2 dpkg-source: info: unpacking libpll_0.3.2.orig.tar.gz dpkg-source: info: unpacking libpll_0.3.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix-parallel-build.patch dpkg-source: info: applying pass_cflags_during_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3724531/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='86ba0eec3fe94b82b1d6f549a74c5c8b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3724531' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/pbuilderrc_4o17 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/b1 --logfile b1/build.log libpll_0.3.2-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3724531/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19901 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libfl-dev libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 21.4 MB of archives. After unpacking 84.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 flex amd64 2.6.4-8.2+b2 [426 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Fetched 21.4 MB in 0s (77.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) Preparing to unpack .../00-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package m4. Preparing to unpack .../01-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../02-flex_2.6.4-8.2+b2_amd64.deb ... Unpacking flex (2.6.4-8.2+b2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpll_0.3.2-5_source.changes dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: installing 'm4/libtool.m4' from '/usr/share/aclocal/libtool.m4' aclocal: installing 'm4/ltoptions.m4' from '/usr/share/aclocal/ltoptions.m4' aclocal: installing 'm4/ltsugar.m4' from '/usr/share/aclocal/ltsugar.m4' aclocal: installing 'm4/ltversion.m4' from '/usr/share/aclocal/ltversion.m4' aclocal: installing 'm4/lt~obsolete.m4' from '/usr/share/aclocal/lt~obsolete.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:18: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:18: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:19: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:19: the top level configure.ac:17: installing './compile' configure.ac:11: installing './config.guess' configure.ac:11: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am:3: warning: shell dpkg-buildflags --get CFLAGS: non-POSIX variable name src/Makefile.am:3: (probably a GNU make extension) src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for bison... bison -y checking for exp in -lm... yes checking for assert.h... yes checking for math.h... yes checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for ctype.h... yes checking for x86intrin.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for asprintf... yes checking for memcpy... yes checking for memset... yes checking for posix_memalign... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands libpll 0.3.2 Target: linux-gnu x86_64 Compiler: gcc CFLAGS: -g -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' make all-recursive make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` /bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 102 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 102 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:104.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 104 | %destructor { pll_rtree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:105.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 105 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:106.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 106 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 107 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 159 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 159 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 161 | %destructor { pll_utree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:162.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 162 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:163.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 163 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 164 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_utree.h updating parse_rtree.h make all-am make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall 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|| echo './'`output.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -fPIC -DPIC -o .libs/libpll_la-pll.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_derivatives_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_likelihood_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-fast_parsimony_sse.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -o libsimd_avx_la-core_derivatives_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo -lm libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1 libtool: link: ar cr .libs/libsimd_avx2.a .libs/libsimd_avx2_la-core_partials_avx2.o .libs/libsimd_avx2_la-core_derivatives_avx2.o .libs/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libsimd_avx2_la-core_likelihood_avx2.o .libs/libsimd_avx2_la-fast_parsimony_avx2.o libtool: link: ranlib .libs/libsimd_avx2.a libtool: link: ( cd ".libs" && rm -f "libsimd_avx2.la" && ln -s "../libsimd_avx2.la" "libsimd_avx2.la" ) libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1 lex_rtree.l: In function 'pll_rtree_lex': lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l: In function 'pll_utree_lex': lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo -lm libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 libtool: link: ar cr .libs/libsimd_avx.a .libs/libsimd_avx_la-core_partials_avx.o .libs/libsimd_avx_la-core_derivatives_avx.o .libs/libsimd_avx_la-core_pmatrix_avx.o .libs/libsimd_avx_la-core_likelihood_avx.o .libs/libsimd_avx_la-fast_parsimony_avx.o libtool: link: ranlib .libs/libsimd_avx.a libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo -lm libtool: link: ar cr .libs/libsimd_sse.a .libs/libsimd_sse_la-core_partials_sse.o .libs/libsimd_sse_la-core_derivatives_sse.o .libs/libsimd_sse_la-core_likelihood_sse.o .libs/libsimd_sse_la-core_pmatrix_sse.o .libs/libsimd_sse_la-fast_parsimony_sse.o libtool: link: ranlib .libs/libsimd_sse.a libtool: link: ( cd ".libs" && rm -f "libsimd_sse.la" && ln -s "../libsimd_sse.la" "libsimd_sse.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/x86_64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -Wl,--whole-archive ./.libs/libsimd_avx2.a ./.libs/libsimd_avx.a ./.libs/libsimd_sse.a -Wl,--no-whole-archive -lm -g -O2 -fstack-protector-strong -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") libtool: link: (cd .libs/libpll.lax/libsimd_avx2.a && ar x "/build/reproducible-path/libpll-0.3.2/src/./.libs/libsimd_avx2.a") libtool: link: (cd .libs/libpll.lax/libsimd_avx.a && ar x "/build/reproducible-path/libpll-0.3.2/src/./.libs/libsimd_avx.a") libtool: link: (cd .libs/libpll.lax/libsimd_sse.a && ar x "/build/reproducible-path/libpll-0.3.2/src/./.libs/libsimd_sse.a") libtool: link: ar cr .libs/libpll.a libpll_la-fasta.o libpll_la-gamma.o libpll_la-likelihood.o libpll_la-list.o libpll_la-maps.o libpll_la-models.o libpll_la-pll.o libpll_la-output.o libpll_la-utree.o libpll_la-rtree.o libpll_la-derivatives.o libpll_la-partials.o libpll_la-compress.o libpll_la-utree_moves.o libpll_la-utree_svg.o libpll_la-parsimony.o libpll_la-core_derivatives.o libpll_la-core_partials.o libpll_la-core_pmatrix.o libpll_la-core_likelihood.o libpll_la-parse_utree.o libpll_la-parse_rtree.o libpll_la-lex_utree.o libpll_la-lex_rtree.o libpll_la-fast_parsimony.o libpll_la-stepwise.o libpll_la-random.o libpll_la-phylip.o libpll_la-hardware.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_derivatives_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_likelihood_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_partials_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-fast_parsimony_avx2.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_derivatives_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_likelihood_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_partials_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_pmatrix_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-fast_parsimony_avx.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_derivatives_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_likelihood_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_partials_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_pmatrix_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-fast_parsimony_sse.o libtool: link: ranlib .libs/libpll.a libtool: link: rm -fr .libs/libpll.lax libtool: link: ( cd ".libs" && rm -f "libpll.la" && ln -s "../libpll.la" "libpll.la" ) make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making all in man make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making all in examples make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making check in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make check-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making check in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making check in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libpll-0.3.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making install in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make install-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libpll.la '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so.0.0.0 libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) libtool: install: /usr/bin/install -c .libs/libpll.lai /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.la libtool: install: /usr/bin/install -c .libs/libpll.a /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.a libtool: install: chmod 644 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.a libtool: install: ranlib /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' /usr/bin/install -c -m 644 pll.h '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making install in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 libpll.3 '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making install in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/install -c -m 644 lg4/lg4.c lg4/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -m 644 lg4/data/example.fas lg4/data/example.tree '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/install -c -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/install -c -m 644 newton/newton.c newton/Makefile newton/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/install -c -m 644 parsimony/npr-pars.c parsimony/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -m 644 partial-traversal/partial.c partial-traversal/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/install -c -m 644 protein-list/protein-list.c protein-list/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/install -c -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/install -c -m 644 stepwise/stepwise.c stepwise/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' /usr/bin/install -c -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/ld64-1-dev// \ --override s/ld-kfreebsd-x86-64-1-dev// \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpll-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libpll0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpll.a debian/libpll-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so debian/libpll-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so.0 debian/libpll0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so.0.0.0 debian/libpll0/usr/lib/x86_64-linux-gnu PKGDEV=libpll-dev PKGSHL=libpll0 install -d -m 755 debian/libpll-dev/usr/include mv debian/tmp/usr/include/libpll debian/libpll-dev/usr/include make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' sed -i 's/conjuction/conjunction/' man/libpll.3 dh_installman make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' find debian/tmp -type f \( -name "*.la" -o -name "libpll.3" \) | xargs rm -rf find debian/tmp -name examples | xargs rm -rf find debian/libpll-dev/usr/share/doc/libpll-dev/examples/ -name .gitignore | xargs rm -rf dh_missing make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-5_amd64.deb'. dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-5_amd64.deb'. dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpll_0.3.2-5_amd64.buildinfo dpkg-genchanges --build=binary -O../libpll_0.3.2-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3724531 and its subdirectories I: Current time: Tue Apr 30 02:18:48 -12 2024 I: pbuilder-time-stamp: 1714486728 Tue Apr 30 14:18:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Tue Apr 30 14:18:49 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Tue Apr 30 14:19:58 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Tue Apr 30 14:19:59 UTC 2024 I: libpll_0.3.2-5_amd64.changes: Format: 1.8 Date: Tue, 12 Dec 2023 19:59:18 +0700 Source: libpll Binary: libpll-dev libpll0 libpll0-dbgsym Architecture: amd64 Version: 0.3.2-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: libpll-dev - Phylogenetic Likelihood Library (development) libpll0 - Phylogenetic Likelihood Library Closes: 1046603 1049759 Changes: libpll (0.3.2-5) unstable; urgency=medium . * Team upload. * Fix watchfile to detect new versions on github * Standards-Version: 4.6.2 (routine-update) * Apply multi-arch hints. * d/clean: Remove autogenerated files in src/ (Closes: #1046603) * d/source/options: Ignore modified manpage (Closes: #1049759) * d/libpll-dev.examples: Install examples folder * d/rules: Remove files from debian/tmp that do not get installed * d/tests/run-unit-test: Run tests for all supported python versions * d/patches: Pass CFLAGS during build Checksums-Sha1: 471a2bb273a636a37a7782790af20b223e7e329b 226620 libpll-dev_0.3.2-5_amd64.deb 97a3e561655ec0ac8d54dfc130225b77ecb786ea 467508 libpll0-dbgsym_0.3.2-5_amd64.deb 15892d993fb1df4ac957581b8c39be01cbd590ba 181148 libpll0_0.3.2-5_amd64.deb c95d20b941233df337f27f1d26ffca8c6187dcb2 5970 libpll_0.3.2-5_amd64.buildinfo Checksums-Sha256: 6eb501bf11213f0ca7d7fb81ad422571737d70d4a25a70b6ef4ef685a542eeaa 226620 libpll-dev_0.3.2-5_amd64.deb 237cca99bdda9b9b6b1875a22391d6d160587c3b2693e9ff09127587d21104ed 467508 libpll0-dbgsym_0.3.2-5_amd64.deb d5a61f7c37c1b95704499088db8fde3066164f3d11b0ca090c1f676bedd01f8b 181148 libpll0_0.3.2-5_amd64.deb bfe39fa69885bf42fc83f2e066f0971356a6d75db4ea8a8092fd956cd0464699 5970 libpll_0.3.2-5_amd64.buildinfo Files: 0b3a56603d9da4455e66ec73b487ea88 226620 libdevel optional libpll-dev_0.3.2-5_amd64.deb f0780b7389f214a1d380a7afec09c55e 467508 debug optional libpll0-dbgsym_0.3.2-5_amd64.deb 6bfd04fdb255794084bbac7a42338650 181148 libs optional libpll0_0.3.2-5_amd64.deb 1a6edc6a9b703071016e5d86ab777ca3 5970 science optional libpll_0.3.2-5_amd64.buildinfo Tue Apr 30 14:20:00 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_35-8615.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/libpll_0.3.2-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/libpll_0.3.2-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/libpll_0.3.2-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/b1/libpll_0.3.2-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/b2/libpll_0.3.2-5_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.198s) 0.101s 6 calls diff 0.078s 6 calls xz 0.009s 3 calls cmp 0.009s 3 calls cmp (external) 0.001s 10 calls cmp (internal) ## compare_files (cumulative) (total time: 1.567s) 0.422s 1 call abc.DotChangesFile 0.398s 1 call abc.DebFile 0.371s 2 calls abc.XzFile 0.253s 1 call abc.DebDataTarFile 0.081s 1 call abc.TextFile 0.034s 1 call abc.TarFile 0.007s 1 call abc.Md5sumsFile ## container_extract (total time: 0.121s) 0.078s 6 calls diffoscope.comparators.xz.XzContainer 0.035s 124 calls diffoscope.comparators.deb.DebTarContainer 0.005s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.004s) 0.004s 5 calls linediff ## has_same_content_as (total time: 0.012s) 0.007s 3 calls abc.DebFile 0.004s 1 call abc.DebDataTarFile 0.001s 3 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile ## main (total time: 0.843s) 0.835s 2 calls outputs 0.008s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.046s) 0.045s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.113s) 0.066s 546 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile 0.014s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.007s 162 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.075s) 0.075s 14 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1.224s CPU time consumed: 1.273s Tue Apr 30 14:20:02 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Tue Apr 30 14:20:02 UTC 2024 E: libpll failed to build reproducibly in trixie on amd64. Tue Apr 30 14:20:03 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 30 14:20:03 UTC 2024 I: Submitting 8.0K b1/libpll_0.3.2-5_amd64.buildinfo.asc Tue Apr 30 14:20:05 UTC 2024 I: Submitting 8.0K b2/libpll_0.3.2-5_amd64.buildinfo.asc Tue Apr 30 14:20:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 30 14:20:06 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 30 14:20:06 UTC 2024 I: Removing signed libpll_0.3.2-5_amd64.buildinfo.asc files: removed './b1/libpll_0.3.2-5_amd64.buildinfo.asc' removed './b2/libpll_0.3.2-5_amd64.buildinfo.asc'