Sun Dec 1 05:35:00 UTC 2024 I: starting to build libobjcryst/trixie/amd64 on jenkins on '2024-12-01 05:34' Sun Dec 1 05:35:00 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/24739/console.log Sun Dec 1 05:35:00 UTC 2024 I: Downloading source for trixie/libobjcryst=2022.1.4+ds1-2 --2024-12-01 05:35:01-- http://deb.debian.org/debian/pool/main/libo/libobjcryst/libobjcryst_2022.1.4%2bds1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1646 (1.6K) [text/prs.lines.tag] Saving to: ‘libobjcryst_2022.1.4+ds1-2.dsc’ 0K . 100% 226M=0s 2024-12-01 05:35:01 (226 MB/s) - ‘libobjcryst_2022.1.4+ds1-2.dsc’ saved [1646/1646] Sun Dec 1 05:35:01 UTC 2024 I: libobjcryst_2022.1.4+ds1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libobjcryst Binary: libobjcryst-dev, libobjcryst0 Architecture: amd64 Version: 2022.1.4+ds1-2 Maintainer: Debian PaN Maintainers Uploaders: Neil Williams , Picca Frédéric-Emmanuel , Homepage: https://github.com/diffpy/libobjcryst Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/science-team/libobjcryst Vcs-Git: https://salsa.debian.org/science-team/libobjcryst.git Testsuite: autopkgtest Testsuite-Triggers: g++ Build-Depends: debhelper-compat (= 13), scons, libcctbx-dev, libboost-dev, libnewmat10-dev Package-List: libobjcryst-dev deb libdevel optional arch=amd64 libobjcryst0 deb libs optional arch=amd64 Checksums-Sha1: 26b317fc61073fbd49580ae2b5dac1675616eb02 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 196dab1cc61d28e47681d84b87d69bf926d73aea 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz Checksums-Sha256: 91a685484f3f955868de9b505d55e1a5f4323ce11f62c592834cd52eceaed9d9 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 6249be8ff3f8cb68f87e1cc283bd856dde534291e0c756c2d2c21481ccfbe67f 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz Files: 4234772916707328c43f09692fdb1b95 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 4f646e946afd00173a73d487178553e1 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIoEARYKADIWIQTumtb5BSD6EfafSCRHew2wJjpU2AUCY7sPFhQcc3RlZmFub3JA ZGViaWFuLm9yZwAKCRBHew2wJjpU2HzfAQDUCl+xxswkEbO/B0CQ1OdKKdKpn1dF plUeHyRJZ7JoSwD/Z7fQ6g23rTxaUhNN/wyaSN6SfWtA5dB4BZMKF1mGTAM= =ad8w -----END PGP SIGNATURE----- Sun Dec 1 05:35:01 UTC 2024 I: Checking whether the package is not for us Sun Dec 1 05:35:01 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Dec 1 05:35:01 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Dec 1 05:48:56 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 30 17:35:03 -12 2024 I: pbuilder-time-stamp: 1733031303 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libobjcryst_2022.1.4+ds1-2.dsc] I: copying [./libobjcryst_2022.1.4+ds1.orig.tar.xz] I: copying [./libobjcryst_2022.1.4+ds1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 8 18:44:38 2023 gpgv: using EDDSA key EE9AD6F90520FA11F69F4824477B0DB0263A54D8 gpgv: issuer "stefanor@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libobjcryst_2022.1.4+ds1-2.dsc: no acceptable signature found dpkg-source: info: extracting libobjcryst in libobjcryst-2022.1.4+ds1 dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1.orig.tar.xz dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying scons_debian.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying symmetry-first.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/407669/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9137042bd9f24717895792f36f6fd9de' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='407669' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mk4WpzAn/pbuilderrc_uiLH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mk4WpzAn/b1 --logfile b1/build.log libobjcryst_2022.1.4+ds1-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/407669/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), scons, libcctbx-dev, libboost-dev, libnewmat10-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19962 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on scons; however: Package scons is not installed. pbuilder-satisfydepends-dummy depends on libcctbx-dev; however: Package libcctbx-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libnewmat10-dev; however: Package libnewmat10-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libann-cctbx-dev{a} libann-cctbx0{a} libarchive-zip-perl{a} libboost-dev{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcbf1t64{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libcctbx-dev{a} libcctbx0{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libmmdb2-0{a} libnewmat10-dev{a} libnewmat10ldbl{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-dev{a} python3-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} scons{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After unpacking 354 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 57 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2 [306 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83-dev amd64 1.83.0-3.2 [327 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libcbf1t64 amd64 0.9.7+dfsg1-4+b1 [364 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libccp4-data all 8.0.0-4 [62.7 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libccp4c0t64 amd64 8.0.0-4 [89.9 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libmmdb2-0 amd64 2.0.22-1+b2 [342 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libccp4f0t64 amd64 8.0.0-4 [208 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libccp4-dev amd64 8.0.0-4 [42.9 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcctbx0 amd64 2024.8+ds2+~3.21.1+ds1-3 [2352 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libcctbx-dev amd64 2024.8+ds2+~3.21.1+ds1-3 [1160 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnewmat10ldbl amd64 1.10.4-9 [151 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnewmat10-dev amd64 1.10.4-9 [28.5 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 scons all 4.8.1+dfsg-1 [548 kB] Fetched 56.5 MB in 5s (11.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19962 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libboost1.83-dev:amd64 (1.83.0-3.2) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 1 05:37:45 UTC 2024. Universal Time is now: Sun Dec 1 05:37:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libnewmat10ldbl:amd64 (1.10.4-9) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnewmat10-dev:amd64 (1.10.4-9) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libccp4c0t64:amd64 (8.0.0-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... 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Setting up python3-dev (3.12.6-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libcctbx-dev (2024.8+ds2+~3.21.1+ds1-3) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libobjcryst-2022.1.4+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libobjcryst_2022.1.4+ds1-2_source.changes dpkg-buildpackage: info: source package libobjcryst dpkg-buildpackage: info: source version 2022.1.4+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stefano Rivera dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libobjcryst-2022.1.4+ds1' dh_auto_clean rm -f -r .sconsign.dblite debian/objcryst sconscript.local site_scons/gitarchive.cfg rm -f examples/objcryst_test find . -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/libobjcryst-2022.1.4+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libobjcryst-2022.1.4+ds1' mkdir -p debian/objcryst/usr/ LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/" scons -Q build=debug prefix=. with_shared_cctbx=1 install g++ -o debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Atom.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Atom.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Atom.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/Atom.cpp:27: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/CIF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/bessel.hpp:19, from /usr/include/scitbx/math/bessel.h:9, from /usr/include/cctbx/hendrickson_lattman.h:6, from /usr/include/cctbx/miller/sym_equiv.h:4, from debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:7: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:28, from debian/objcryst/usr/ObjCryst/ObjCryst/CIF.h:17, from debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:10: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:539: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h:531:32: warning: 'virtual CrystVector ObjCryst::ScatteringData::SortReflectionBySinThetaOverLambda(double) const' was hidden [-Woverloaded-virtual=] 531 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxSTOL=-1.) const; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:33: debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:294:32: note: by 'virtual CrystVector ObjCryst::DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(double)' 294 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp: In function 'ObjCryst::Crystal* ObjCryst::CreateCrystalFromCIF(CIF&, bool, bool, bool, bool, Crystal*)': debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1045:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1045 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1066:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1066 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1088:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1088 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1138:22: warning: catching polymorphic type 'class std::invalid_argument' by value [-Wcatch-value=] 1138 | catch(invalid_argument) | ^~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1176:29: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 1176 | catch(cctbx::error) | ^~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.cpp:32: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:20, from debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.cpp:29: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:539: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h:531:32: warning: 'virtual CrystVector ObjCryst::ScatteringData::SortReflectionBySinThetaOverLambda(double) const' was hidden [-Woverloaded-virtual=] 531 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxSTOL=-1.) const; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:294:32: note: by 'virtual CrystVector ObjCryst::DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(double)' 294 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Exception.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Exception.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/IO.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Scatterer.h:26, from debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp:31: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp:33: debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.h:52:7: note: by 'ObjCryst::GlobalScatteringPower& ObjCryst::GlobalScatteringPower::operator=(const ObjCryst::GlobalScatteringPower&)' 52 | class GlobalScatteringPower:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp:36: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.h:41:7: note: by 'ObjCryst::ScatteringPowerSphere& ObjCryst::ScatteringPowerSphere::operator=(const ObjCryst::ScatteringPowerSphere&)' 41 | class ScatteringPowerSphere: public ScatteringPower | ^~~~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:539: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h:531:32: warning: 'virtual CrystVector ObjCryst::ScatteringData::SortReflectionBySinThetaOverLambda(double) const' was hidden [-Woverloaded-virtual=] 531 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxSTOL=-1.) const; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp:38: debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:294:32: note: by 'virtual CrystVector ObjCryst::DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(double)' 294 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:28, from debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.h:33, from debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.cpp:25: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:539: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h:531:32: warning: 'virtual CrystVector ObjCryst::ScatteringData::SortReflectionBySinThetaOverLambda(double) const' was hidden [-Woverloaded-virtual=] 531 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxSTOL=-1.) const; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/CIF.h:18, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:31: debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:294:32: note: by 'virtual CrystVector ObjCryst::DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(double)' 294 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.h:32, from debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.cpp:31: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.cpp:32: debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.h:52:7: note: by 'ObjCryst::GlobalScatteringPower& ObjCryst::GlobalScatteringPower::operator=(const ObjCryst::GlobalScatteringPower&)' 52 | class GlobalScatteringPower:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PDF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PDF.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/PDF.h:26, from debian/objcryst/usr/ObjCryst/ObjCryst/PDF.cpp:21: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.h:22, from debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.cpp:1: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp In file included from debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h:30, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:28, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp:32: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:117:20: warning: 'virtual void ObjCryst::ScatteringPower::operator=(const ObjCryst::ScatteringPower&)' was hidden [-Woverloaded-virtual=] 117 | virtual void operator=(const ScatteringPower& rhs); | ^~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:346:7: note: by 'ObjCryst::ScatteringPowerAtom& ObjCryst::ScatteringPowerAtom::operator=(const ObjCryst::ScatteringPowerAtom&)' 346 | class ScatteringPowerAtom:virtual public ScatteringPower | ^~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h:539: debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h:531:32: warning: 'virtual CrystVector ObjCryst::ScatteringData::SortReflectionBySinThetaOverLambda(double) const' was hidden [-Woverloaded-virtual=] 531 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxSTOL=-1.) const; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from debian/objcryst/usr/ObjCryst/ObjCryst/CIF.h:18, from debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h:31: debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h:294:32: note: by 'virtual CrystVector ObjCryst::DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(double)' 294 | virtual CrystVector_long SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp: In function 'std::vector ObjCryst::spgExtinctionFingerprint(Crystal&, const cctbx::sgtbx::space_group&)': debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp:6853:17: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6853 | if(i>=fingerprint.size()) cout<<"WHOOOOOOOOOOOOOPS"<