Fri May 17 01:48:33 UTC 2024 I: starting to build libfreecontact-perl/trixie/amd64 on jenkins on '2024-05-17 01:48' Fri May 17 01:48:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/21011/console.log Fri May 17 01:48:33 UTC 2024 I: Downloading source for trixie/libfreecontact-perl=0.08-9 --2024-05-17 01:48:33-- http://deb.debian.org/debian/pool/main/libf/libfreecontact-perl/libfreecontact-perl_0.08-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘libfreecontact-perl_0.08-9.dsc’ 0K .. 100% 264M=0s 2024-05-17 01:48:33 (264 MB/s) - ‘libfreecontact-perl_0.08-9.dsc’ saved [2184/2184] Fri May 17 01:48:33 UTC 2024 I: libfreecontact-perl_0.08-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz d2bdf94b23d0ca1fce6bb1df286ba03736b17947 4148 libfreecontact-perl_0.08-9.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 7264029a96308f34c90fc201b3b7ee6f75cd12f5412f34b57098cb32ab6fdea5 4148 libfreecontact-perl_0.08-9.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 49edda281a739efab371adb449402c83 4148 libfreecontact-perl_0.08-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHodgoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE0jg/+NNIJ0xmtW0+M4m7Z/M7RJunfhXJEXyCJ 2uR3K+0jyER5JJ9UQw7TMR+M19NCliWpTWdXlNYC1+p9chj46IlW/pV1+lNAsOes jmWO/JJLVAn2hexfmzBQytW7UGG+EZyiSIJYo/Wxv6D+vQ413lAbCrO59fRVj2Pu c9WMMSHcGetF7E/CUQukaR5Uu76598/h85WKBbiFH5BW/jl0zGB7HsGq3dnc9ahT rIgFhhynzmnNuWKiC0S6RADvma1YLGBWyuixygruRhk2TxRtFXH1jT7pYyCFpC7v f958/c6mH+D3yzuXYRSjki3fdA5k9kcD++c3zzTt2VtOEFlp/eqoN2n0M17aOvNQ sEPqpXzWhDZ6K2/1ICWGKA5WvbjUA9xOcpe5uu8582OVmqVsnBxE5ED27HYngE4b RFipAvxoc3uRZlXpaVI0JAMrrdYVce+bfWVYSqhLeqyyLoWKmAbrQkFEkrHuytYs hp1O8QSireSw0k0+yMeOm6YARVtCTqEknNbsyeSITQH/NkoEOTLSR29iYdxSNO2M jlg9swzJUtE/XbzpwVar9GjT2U1gxUwSGp3lJV+7RdaYrEkmP30hQCaZFXu8aojv p9s2k89K4KIcp1mZR0aN88w2QKvds1USWYIQyLYM3//clWy23WrXIusZdFXGqPE0 uqyR4TECfL4= =2PNN -----END PGP SIGNATURE----- Fri May 17 01:48:33 UTC 2024 I: Checking whether the package is not for us Fri May 17 01:48:34 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri May 17 01:48:34 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri May 17 01:50:23 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 16 13:48:35 -12 2024 I: pbuilder-time-stamp: 1715910515 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfreecontact-perl_0.08-9.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-9.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 19 20:35:22 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libfreecontact-perl_0.08-9.dsc: no acceptable signature found dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2314614/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='01644a718a454af0b2c188bd6122b49c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2314614' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/pbuilderrc_VmvN --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/b1 --logfile b1/build.log libfreecontact-perl_0.08-9.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 16 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2314614/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After unpacking 85.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfreecontact0t64 amd64 1.0.21-13.1+b1 [80.3 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libfreecontact-dev amd64 1.0.21-13.1+b1 [89.0 kB] Fetched 22.8 MB in 0s (55.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../30-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../31-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../32-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../33-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package libfreecontact0t64:amd64. Preparing to unpack .../34-libfreecontact0t64_1.0.21-13.1+b1_amd64.deb ... Unpacking libfreecontact0t64:amd64 (1.0.21-13.1+b1) ... Selecting previously unselected package libfreecontact-dev:amd64. Preparing to unpack .../35-libfreecontact-dev_1.0.21-13.1+b1_amd64.deb ... Unpacking libfreecontact-dev:amd64 (1.0.21-13.1+b1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libfreecontact0t64:amd64 (1.0.21-13.1+b1) ... Setting up groff-base (1.23.0-4) ... Setting up libfreecontact-dev:amd64 (1.0.21-13.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LD="'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" "LD='x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_build make -j20 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.38/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.38/ExtUtils/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE" FreeContact.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ rm -f blib/arch/auto/FreeContact/FreeContact.so 'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_test make -j20 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads SSE2 veczweight, wchunk = 128 total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.005948 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.116828 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 5.27665 secs, inverted matrix (incl LUf) in 21.7344 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 22.1121 secs will use 1 OMP threads SSE2 veczweight, wchunk = 128 total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004379 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.094038 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 8.38288 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2will use 1 OMP threads SSE2 veczweight, wchunk = 128 total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.084768 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 5.65928 secs, inverted matrix (incl LUf) in 24.1386 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 58 wallclock secs ( 0.02 usr 0.03 sys + 57.28 cusr 0.15 csys = 57.48 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ make -j20 install DESTDIR=/build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/FreeContact/FreeContact.so Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/FreeContact.pm Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/FreeContact/autosplit.ix Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9_amd64.deb'. dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfreecontact-perl_0.08-9_amd64.buildinfo dpkg-genchanges --build=binary -O../libfreecontact-perl_0.08-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2314614 and its subdirectories I: Current time: Thu May 16 13:50:22 -12 2024 I: pbuilder-time-stamp: 1715910622 Fri May 17 01:50:23 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri May 17 01:50:23 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri May 17 01:55:41 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri May 17 01:55:42 UTC 2024 I: libfreecontact-perl_0.08-9_amd64.changes: Format: 1.8 Date: Wed, 19 Jan 2022 21:31:25 +0100 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: amd64 Version: 0.08-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-9) unstable; urgency=medium . * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: 90cec2b382bac33ef443030e369eb947975a069d 164100 libfreecontact-perl-dbgsym_0.08-9_amd64.deb 0b290d79a190b700809dd28c5b1f6396453f22f1 5401 libfreecontact-perl_0.08-9_amd64.buildinfo 73447b1b783919e37708ecaeb97aa815cb3a7dc1 63552 libfreecontact-perl_0.08-9_amd64.deb Checksums-Sha256: 826895824c1cad5bbc474d8f851cbd605d9f76599f989eca2ba02e49e0cdd926 164100 libfreecontact-perl-dbgsym_0.08-9_amd64.deb af346a7f8208425979fadd8f313b6cc3432e4b7621b07f10493f9e261b67ff96 5401 libfreecontact-perl_0.08-9_amd64.buildinfo cda472d4ae6c347f280c858cd5bd62f236a3da79474d0256811352dacc5371be 63552 libfreecontact-perl_0.08-9_amd64.deb Files: 0b7e9af71e97779e33694df401bd688e 164100 debug optional libfreecontact-perl-dbgsym_0.08-9_amd64.deb 95a274475f6795b54373281a975fd007 5401 perl optional libfreecontact-perl_0.08-9_amd64.buildinfo ec20106e2772d434e2ae133ff1a293a6 63552 perl optional libfreecontact-perl_0.08-9_amd64.deb Fri May 17 01:55:43 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_27-21011.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/libfreecontact-perl_0.08-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/libfreecontact-perl_0.08-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/libfreecontact-perl_0.08-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/b1/libfreecontact-perl_0.08-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.X0yJLs0g/b2/libfreecontact-perl_0.08-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.364s) 0.363s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 713ms CPU time consumed: 710ms Fri May 17 01:55:44 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 17 01:55:44 UTC 2024 I: libfreecontact-perl from trixie built successfully and reproducibly on amd64. Fri May 17 01:55:46 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 17 01:55:46 UTC 2024 I: Submitting 8.0K b1/libfreecontact-perl_0.08-9_amd64.buildinfo.asc Fri May 17 01:55:47 UTC 2024 I: Submitting 8.0K b2/libfreecontact-perl_0.08-9_amd64.buildinfo.asc Fri May 17 01:55:47 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 17 01:55:47 UTC 2024 I: Done submitting .buildinfo files. Fri May 17 01:55:47 UTC 2024 I: Removing signed libfreecontact-perl_0.08-9_amd64.buildinfo.asc files: removed './b1/libfreecontact-perl_0.08-9_amd64.buildinfo.asc' removed './b2/libfreecontact-perl_0.08-9_amd64.buildinfo.asc'