Tue May 7 07:26:49 UTC 2024 I: starting to build libfastahack/trixie/amd64 on jenkins on '2024-05-07 07:26' Tue May 7 07:26:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/5909/console.log Tue May 7 07:26:49 UTC 2024 I: Downloading source for trixie/libfastahack=1.0.0+dfsg-11 --2024-05-07 07:26:49-- http://deb.debian.org/debian/pool/main/libf/libfastahack/libfastahack_1.0.0%2bdfsg-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2357 (2.3K) [text/prs.lines.tag] Saving to: ‘libfastahack_1.0.0+dfsg-11.dsc’ 0K .. 100% 243M=0s 2024-05-07 07:26:49 (243 MB/s) - ‘libfastahack_1.0.0+dfsg-11.dsc’ saved [2357/2357] Tue May 7 07:26:50 UTC 2024 I: libfastahack_1.0.0+dfsg-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libfastahack Binary: libfastahack0, libfastahack-dev, fastahack Architecture: any Version: 1.0.0+dfsg-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/ekg/fastahack Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libfastahack Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man Package-List: fastahack deb science optional arch=any libfastahack-dev deb libdevel optional arch=any libfastahack0 deb libs optional arch=any Checksums-Sha1: 3e89fea6a55b5a312a980d1d493a77f64dfb5d9a 9088 libfastahack_1.0.0+dfsg.orig.tar.xz 5d1fe0d92795b53d0164a877bfdf0b2acc5f5bf3 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Checksums-Sha256: 41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af 9088 libfastahack_1.0.0+dfsg.orig.tar.xz aec68f5790fe2b9b7ac7557b1182987bf1a3a61b9f24bba99d6f7a5a5270ce23 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Files: ef74d8e313b8f84e6454baa07b9a0026 9088 libfastahack_1.0.0+dfsg.orig.tar.xz bca7f6fe5e00c467fba6f584598a006f 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Dgit: b4338c5619bc20a2328953e66c5a1610a31491b0 debian archive/debian/1.0.0+dfsg-11 https://git.dgit.debian.org/libfastahack -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVvSfMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrqChAAp5p5VWNXF8eBMCWjPVlBMiU+GWC0 +NLK7yZz0JG5CDtP9x8wjl5yl3jS4MB8cG12f4JwKgv/1FOHhge0bBvstKFBxqSv 7R3eLJjQLNSoPj9b8DkqLEfQ8OXq7BEJvfWl1BTNICtBjp9uJPHL8hAsWU4aYk4y aBc/DeNgzjvA7YP+87X8CWCqKZhYtAXviUlxDh6ILAZQ7cnI2aNKRhHGvjN9zUj0 ps64dmsYAsAnFCwnK3ArQ+igz+F89HwCq8RPw/Rpf3FyOUvf0Sa+PPgfR3cXgQFb z+ZDYY16+P3aL8oHRNLd+Xv40g59owgWq68MS0ROPH36C6BZALX/825vuS5YVYkw yisLK+gvkBNA60kMWHosDOI7Bh3BE7qaN3SwmZSiBtyZ1HutZXK1BpK05+LWU5XJ Beuw8hKUeNTbPJa5X9yyN0e9A42HRvBZ49PAEpfwOB73Zi8CvucFn5pOAPwHLcQH hXRyDDleN/NUrzKkO6fXO9pSq4oCgt0JLjh83YxBjg51jvMlnLfr3Dog+D7A3CcS LipkEatvgFR3zSnyynjEswiDf/zFUB8xHNsX6ici2AYJZzs1wh8k7vA8qZBGqyUh HZObOTiQ417b7QWPM/AvNLjYDV0Dxj9E3XTrgd7kHDRumKY+S+X/k92PcD792KFn RrYlLaVIBYZhb/M= =/Hub -----END PGP SIGNATURE----- Tue May 7 07:26:50 UTC 2024 I: Checking whether the package is not for us Tue May 7 07:26:50 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue May 7 07:26:50 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue May 7 07:28:28 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 9 01:49:52 -12 2025 I: pbuilder-time-stamp: 1749476992 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 5 16:04:03 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3243784/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='17084666666740dc87e1c5c7a0d507d7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3243784' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/pbuilderrc_psI7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3243784/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 74.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b1 [4884 B] Get: 35 http://deb.debian.org/debian trixie/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b1 [4860 B] Fetched 19.3 MB in 1s (19.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../24-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../26-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libdisorder0:amd64. Preparing to unpack .../33-libdisorder0_0.0.2+git20130809.8062ee1-4+b1_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:amd64. Preparing to unpack .../34-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16912: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/13/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/13 -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/13/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbolsbXNhVL 2025-06-09 13:51:21.999794081 +0000 @@ -32,9 +32,9 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f @@ -42,18 +42,18 @@ (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# 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0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3243784 and its subdirectories I: Current time: Mon Jun 9 01:51:26 -12 2025 I: pbuilder-time-stamp: 1749477086 Tue May 7 07:28:28 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue May 7 07:28:28 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue May 7 07:33:20 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue May 7 07:33:21 UTC 2024 I: libfastahack_1.0.0+dfsg-11_amd64.changes: Format: 1.8 Date: Tue, 05 Dec 2023 16:59:42 +0100 Source: libfastahack Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym Architecture: amd64 Version: 1.0.0+dfsg-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastahack - utility for indexing and sequence extraction from FASTA files libfastahack-dev - library for indexing and sequence extraction from FASTA files (de libfastahack0 - library for indexing and sequence extraction from FASTA files (li Closes: 1015486 Changes: libfastahack (1.0.0+dfsg-11) unstable; urgency=medium . * d/libfastahack0.symbols: mark optional symbols. The compiler is leaking a certain number of functions to the library's symbols table. They are variable depending on compiler version, and build options such as link time optimization tend to clean them up, but in both cases this tends to interfere with the existing list. (Closes: #1015486) * autoconf.patch: mark forwarding unneeded. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 917437b7a75c52d765256185bcfb4591f2c004cb 72440 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb ff40723cd8315b9d0dc8261476a379a3522b48a1 12276 fastahack_1.0.0+dfsg-11_amd64.deb 97dc6b7ac2774021041bd9c0831b3e609d0f96d5 275128 libfastahack-dev_1.0.0+dfsg-11_amd64.deb 5134cb35efc5a58fc65bbac4aee563075fd1612e 252004 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb 401490103e465deb46dac9145179ac9f417cf53d 27224 libfastahack0_1.0.0+dfsg-11_amd64.deb f70ff07e69593280324893fcbaab662a52da53c6 6737 libfastahack_1.0.0+dfsg-11_amd64.buildinfo Checksums-Sha256: c961230655b11b532b59c4e8c920d7ad412c3ff2f67935ce0f3bf4e33010e5b3 72440 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb 2ee4e7487d87bf6216e36d3712755f42fd061f093070c9d82299ad35eb0081da 12276 fastahack_1.0.0+dfsg-11_amd64.deb 5963079eea15fec1bf136a036647fada4e3839b42ea678b3addd55a0b7862f51 275128 libfastahack-dev_1.0.0+dfsg-11_amd64.deb 580aa04ae1ea17345d9d846ad2e0d139f230d98938b990aa8673741627602264 252004 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb b11df77344393aaf28fadc1038d59701b26689694958b3246ac9d8d3c18008f2 27224 libfastahack0_1.0.0+dfsg-11_amd64.deb bc9c5ea9ccea37fcc02d9fb640a8d3d717b13e28f2e27b17744f87d2d5102de5 6737 libfastahack_1.0.0+dfsg-11_amd64.buildinfo Files: ca396f13f0db52b8760139df94c4dbf8 72440 debug optional fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb 1f6028e6e46f15bab25d81020bcf2b3d 12276 science optional fastahack_1.0.0+dfsg-11_amd64.deb 343282827bff9d91c46c9ab3c7075976 275128 libdevel optional libfastahack-dev_1.0.0+dfsg-11_amd64.deb 5437a10fa64dd49a45acacbaa07d6cc0 252004 debug optional libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb d633a901b22209717806710e14b27780 27224 libs optional libfastahack0_1.0.0+dfsg-11_amd64.deb 3192e2f832b6237a54b83df244b679e7 6737 science optional libfastahack_1.0.0+dfsg-11_amd64.buildinfo Tue May 7 07:33:22 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_26-5909.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/libfastahack_1.0.0+dfsg-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/libfastahack_1.0.0+dfsg-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/libfastahack_1.0.0+dfsg-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/b1/libfastahack_1.0.0+dfsg-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gg3upkW1/b2/libfastahack_1.0.0+dfsg-11_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.373s) 0.373s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 708ms CPU time consumed: 709ms Tue May 7 07:33:23 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue May 7 07:33:23 UTC 2024 I: libfastahack from trixie built successfully and reproducibly on amd64. Tue May 7 07:33:24 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 7 07:33:24 UTC 2024 I: Submitting 8.0K b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Tue May 7 07:33:25 UTC 2024 I: Submitting 8.0K b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Tue May 7 07:33:26 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 7 07:33:26 UTC 2024 I: Done submitting .buildinfo files. Tue May 7 07:33:26 UTC 2024 I: Removing signed libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc files: removed './b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc' removed './b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc'