Wed May 1 12:26:05 UTC 2024 I: starting to build lefse/trixie/amd64 on jenkins on '2024-05-01 12:25' Wed May 1 12:26:05 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/18023/console.log Wed May 1 12:26:05 UTC 2024 I: Downloading source for trixie/lefse=1.1.2-1 --2024-05-01 12:26:05-- http://deb.debian.org/debian/pool/main/l/lefse/lefse_1.1.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1970 (1.9K) [text/prs.lines.tag] Saving to: ‘lefse_1.1.2-1.dsc’ 0K . 100% 246M=0s 2024-05-01 12:26:05 (246 MB/s) - ‘lefse_1.1.2-1.dsc’ saved [1970/1970] Wed May 1 12:26:05 UTC 2024 I: lefse_1.1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lefse Binary: lefse Architecture: all Version: 1.1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/SegataLab/lefse Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/lefse Vcs-Git: https://salsa.debian.org/med-team/lefse.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools Package-List: lefse deb science optional arch=all Checksums-Sha1: cc372012f73084725cf0af9e3e5b39cbb70282b8 64149 lefse_1.1.2.orig.tar.gz 19ae27edf1f817ca1aee645dcae8f907b0831a8a 12512 lefse_1.1.2-1.debian.tar.xz Checksums-Sha256: ff4fcd792e11cd7f76597ca3b14c75521b442a965e3a708862dcbac8d4af65e1 64149 lefse_1.1.2.orig.tar.gz d26aa3f97f83a8a960d1b2d89b804fb67cab2bfd9641793375d1388f4e83f99a 12512 lefse_1.1.2-1.debian.tar.xz Files: a1350f72bfd877301f5f8de6fd679f4c 64149 lefse_1.1.2.orig.tar.gz 124c83f436c125530c55a0081d70eff8 12512 lefse_1.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFStV0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGoQw//buNSVofYCTn5PMctZKlY8F8bY8lnuD/d Bt9XNEcp/+jHS8/4NzJo6ra9Q5gqslZarcf3rKHbPaU/Y8tYYtMFgtyXL3EfyuAv l1JDiu7UvEWoMnxHukalqaexAOxEKfIhyGJ9u424pWkQVK7mBzWmDbVPLrt69EL0 FhVhopfw+buTbI1oU9l67G/A5424AIIwslPx6ekKwwa8v0QqyHvPY0XPhYKdG4m/ 1Hly2ylgLtKYBBL0o11ka8RbcVIDx6P4K/lJcs/jXOZ5lv28LiypOZaMQCKGtGxB n8/6yMEPglUqLn5Of7liO78CYCy2T71lwhQjReIeDKXLFvOWuJz4lFDUkR6E1YzO Rvcp950IfJWhVMEMe6yy1xeSEdfSY74y5AQfKBh3NGxc/K8ExKlvnvlxeweqiijX QVgiXINH8r1qBHbDuLZsQDc2+DfDvmYpJg7P5IPtc5V/R2/rXSJhmcThxHtjGtdX /Q3pyBiSwJ4z3xBZnFUDuX9nFAcxOWcscO2UPH74uqgeiI1CVzhj1ApyavyrJGOT vNv3We5R1VqE7FOiF4zDZBCAneedRzhl2KMOCex9HOJwjOkGKWDZP3tNTTdj9AlD 64lD64dKjrI6AmzPq/fb4qqm6U9gWRyxEzqNeFWjLxFkWJccnDCGzAJJ9qGdqjqy 6oQ2or8w8Hc= =lXpe -----END PGP SIGNATURE----- Wed May 1 12:26:05 UTC 2024 I: Checking whether the package is not for us Wed May 1 12:26:05 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed May 1 12:26:05 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed May 1 12:27:01 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 3 06:49:08 -12 2025 I: pbuilder-time-stamp: 1748976548 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lefse_1.1.2-1.dsc] I: copying [./lefse_1.1.2.orig.tar.gz] I: copying [./lefse_1.1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 28 06:25:33 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lefse_1.1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting lefse in lefse-1.1.2 dpkg-source: info: unpacking lefse_1.1.2.orig.tar.gz dpkg-source: info: unpacking lefse_1.1.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/822896/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fe3376b76c2544c29b2d03c8bd01ae43' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='822896' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/pbuilderrc_j2qU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/b1 --logfile b1/build.log lefse_1.1.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/822896/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.5 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: dh-python but it is not installable Depends: python3-all but it is not installable Depends: python3-setuptools but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libdb5.3 [5.3.28+dfsg2-4+b1 (now)] 2) libssl3 [3.1.5-1 (now)] Install the following packages: 3) dh-python [6.20240422 (testing)] 4) libdb5.3t64 [5.3.28+dfsg2-7 (testing)] 5) libexpat1 [2.6.2-1 (testing)] 6) libpython3-stdlib [3.11.8-1 (testing)] 7) libpython3.11-minimal [3.11.9-1 (testing)] 8) libpython3.11-stdlib [3.11.9-1 (testing)] 9) libpython3.12-minimal [3.12.3-1 (testing)] 10) libpython3.12-stdlib [3.12.3-1 (testing)] 11) libreadline8t64 [8.2-4 (testing)] 12) libssl3t64 [3.2.1-3 (testing)] 13) media-types [10.1.0 (testing)] 14) netbase [6.4 (testing)] 15) python3 [3.11.8-1 (testing)] 16) python3-all [3.11.8-1 (testing)] 17) python3-distutils [3.12.3-1 (testing)] 18) python3-lib2to3 [3.12.3-1 (testing)] 19) python3-minimal [3.11.8-1 (testing)] 20) python3-pkg-resources [68.1.2-2 (testing)] 21) python3-setuptools [68.1.2-2 (testing)] 22) python3.11 [3.11.9-1 (testing)] 23) python3.11-minimal [3.11.9-1 (testing)] 24) python3.12 [3.12.3-1 (testing)] 25) python3.12-minimal [3.12.3-1 (testing)] 26) readline-common [8.2-4 (testing)] 27) tzdata [2024a-3 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdb5.3t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages will be REMOVED: libdb5.3{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 55 newly installed, 2 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After unpacking 126 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Fetched 34.3 MB in 0s (68.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libperl5.38:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19725 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19724 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19726 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20042 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21034 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../01-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../02-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. 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Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../27-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. 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Preparing to unpack .../38-libpython3.12-stdlib_3.12.3-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../39-python3.12_3.12.3-1_amd64.deb ... Unpacking python3.12 (3.12.3-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../40-python3-all_3.11.8-1_amd64.deb ... Unpacking python3-all (3.11.8-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 3 18:49:38 UTC 2025. Universal Time is now: Tue Jun 3 18:49:38 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lefse-1.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lefse_1.1.2-1_source.changes dpkg-buildpackage: info: source package lefse dpkg-buildpackage: info: source version 1.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse_run.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse_plot_features.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/qiime2lefse.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse2circlader.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/__init__.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse_plot_res.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse_plot_cladogram.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse copying lefse/lefse_format_input.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse creating /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom copying lefsebiom/AbundanceTable.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom copying lefsebiom/ConstantsBreadCrumbs.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom copying lefsebiom/ValidateData.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom copying lefsebiom/CClade.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom copying lefsebiom/__init__.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse_run.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse_plot_features.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/qiime2lefse.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse2circlader.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/__init__.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse_plot_res.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse_plot_cladogram.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse copying lefse/lefse_format_input.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse creating /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom copying lefsebiom/AbundanceTable.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom copying lefsebiom/ConstantsBreadCrumbs.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom copying lefsebiom/ValidateData.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom copying lefsebiom/CClade.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom copying lefsebiom/__init__.py -> /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/lefse/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/lefse-1.1.2/debian/lefse running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12 creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse_run.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse_plot_features.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/qiime2lefse.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse2circlader.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/__init__.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse_plot_res.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse_plot_cladogram.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefse/lefse_format_input.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/AbundanceTable.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/ConstantsBreadCrumbs.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/ValidateData.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/CClade.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.12_lefse/build/lefsebiom/__init__.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse_run.py to lefse_run.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse_plot_features.py to lefse_plot_features.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/qiime2lefse.py to qiime2lefse.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse2circlader.py to lefse2circlader.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse_plot_res.py to lefse_plot_res.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse.py to lefse.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse_plot_cladogram.py to lefse_plot_cladogram.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse/lefse_format_input.py to lefse_format_input.cpython-312.pyc /usr/lib/python3.12/dist-packages/lefse/lefse_format_input.py:274: SyntaxWarning: invalid escape sequence '\|' byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/AbundanceTable.py to AbundanceTable.cpython-312.pyc /usr/lib/python3.12/dist-packages/lefsebiom/AbundanceTable.py:387: SyntaxWarning: invalid escape sequence '\.' byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/ConstantsBreadCrumbs.py to ConstantsBreadCrumbs.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/ValidateData.py to ValidateData.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/CClade.py to CClade.cpython-312.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefsebiom/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating lefse.egg-info writing lefse.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/dist.py:172: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to lefse.egg-info/dependency_links.txt writing entry points to lefse.egg-info/entry_points.txt writing requirements to lefse.egg-info/requires.txt writing top-level names to lefse.egg-info/top_level.txt writing manifest file 'lefse.egg-info/SOURCES.txt' reading manifest file 'lefse.egg-info/SOURCES.txt' writing manifest file 'lefse.egg-info/SOURCES.txt' Copying lefse.egg-info to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.12/dist-packages/lefse-1.1.2.egg-info Skipping SOURCES.txt running install_scripts Installing lefse2circlader.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_format_input.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_cladogram.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_features.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_res.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_run.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing qiime2lefse.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/lefse-1.1.2/debian/lefse running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11 creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse_run.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse_plot_features.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/qiime2lefse.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse2circlader.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/__init__.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse_plot_res.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse_plot_cladogram.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefse/lefse_format_input.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/AbundanceTable.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/ConstantsBreadCrumbs.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom creating /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/__pycache__ copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/ValidateData.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/CClade.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom copying /build/reproducible-path/lefse-1.1.2/.pybuild/cpython3_3.11_lefse/build/lefsebiom/__init__.py -> /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse_run.py to lefse_run.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse_plot_features.py to lefse_plot_features.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/qiime2lefse.py to qiime2lefse.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse2circlader.py to lefse2circlader.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse_plot_res.py to lefse_plot_res.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse.py to lefse.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse_plot_cladogram.py to lefse_plot_cladogram.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse/lefse_format_input.py to lefse_format_input.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/AbundanceTable.py to AbundanceTable.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/ConstantsBreadCrumbs.py to ConstantsBreadCrumbs.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/ValidateData.py to ValidateData.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/CClade.py to CClade.cpython-311.pyc byte-compiling /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefsebiom/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing lefse.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/dist.py:172: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to lefse.egg-info/dependency_links.txt writing entry points to lefse.egg-info/entry_points.txt writing requirements to lefse.egg-info/requires.txt writing top-level names to lefse.egg-info/top_level.txt reading manifest file 'lefse.egg-info/SOURCES.txt' writing manifest file 'lefse.egg-info/SOURCES.txt' Copying lefse.egg-info to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/lib/python3.11/dist-packages/lefse-1.1.2.egg-info Skipping SOURCES.txt running install_scripts Installing lefse2circlader.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_format_input.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_cladogram.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_features.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_plot_res.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing lefse_run.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin Installing qiime2lefse.py script to /build/reproducible-path/lefse-1.1.2/debian/lefse/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lefse-1.1.2' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/lefse-1.1.2' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/lefse-1.1.2' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse_run.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse_plot_features.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/qiime2lefse.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse2circlader.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse_plot_res.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse_plot_cladogram.py I: dh_python3 tools:113: replacing shebang in debian/lefse/usr/bin/lefse_format_input.py make[1]: Leaving directory '/build/reproducible-path/lefse-1.1.2' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'lefse' in '../lefse_1.1.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../lefse_1.1.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../lefse_1.1.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/822896 and its subdirectories I: Current time: Tue Jun 3 06:50:00 -12 2025 I: pbuilder-time-stamp: 1748976600 Wed May 1 12:27:02 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed May 1 12:27:02 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed May 1 12:30:30 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed May 1 12:30:31 UTC 2024 I: lefse_1.1.2-1_amd64.changes: Format: 1.8 Date: Tue, 28 Sep 2021 08:23:43 +0200 Source: lefse Binary: lefse Architecture: all Version: 1.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: lefse - determine features of organisms, clades, taxonomic units, genes Changes: lefse (1.1.2-1) unstable; urgency=medium . * Fix Homepage * Fix watch file * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * debian/rules: - buildsystem=pybuild - remove unneeded overrides * Build-Depends: python3-setuptools * Remove debian/get-orig-source * lintian-overrides: script-with-language-extension * Fix script names in autopkgtest * Inform users about changed names in debian/NEWS Checksums-Sha1: 56f43ce5e0e73646914e5a71c88a01e42e9c960e 57360 lefse_1.1.2-1_all.deb 92475f3013bb30c74b3187567cd7650061b12d19 5621 lefse_1.1.2-1_amd64.buildinfo Checksums-Sha256: 54dc2eadddb4df27934e373e5b586cde0c4fcd7e25aeff1448eceae0862a29c1 57360 lefse_1.1.2-1_all.deb 6281711e51e59f8f56ae2185f9ec6961de73396957c1ad00166b0eb367e30d48 5621 lefse_1.1.2-1_amd64.buildinfo Files: 6d69385a89c43abb9ee9810fff3288f8 57360 science optional lefse_1.1.2-1_all.deb e0348a86b8bc133101dcd9d014b217a6 5621 science optional lefse_1.1.2-1_amd64.buildinfo Wed May 1 12:30:33 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_20-18023.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/lefse_1.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/lefse_1.1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/lefse_1.1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/b1/lefse_1.1.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NSz7CcLj/b2/lefse_1.1.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 657ms CPU time consumed: 656ms Wed May 1 12:30:34 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 1 12:30:34 UTC 2024 I: lefse from trixie built successfully and reproducibly on amd64. Wed May 1 12:30:35 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 1 12:30:35 UTC 2024 I: Submitting 8.0K b1/lefse_1.1.2-1_amd64.buildinfo.asc Wed May 1 12:30:36 UTC 2024 I: Submitting 8.0K b2/lefse_1.1.2-1_amd64.buildinfo.asc Wed May 1 12:30:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 1 12:30:38 UTC 2024 I: Done submitting .buildinfo files. Wed May 1 12:30:38 UTC 2024 I: Removing signed lefse_1.1.2-1_amd64.buildinfo.asc files: removed './b1/lefse_1.1.2-1_amd64.buildinfo.asc' removed './b2/lefse_1.1.2-1_amd64.buildinfo.asc'