Fri May 10 07:49:40 UTC 2024 I: starting to build indelible/trixie/amd64 on jenkins on '2024-05-10 07:49' Fri May 10 07:49:40 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/11781/console.log Fri May 10 07:49:40 UTC 2024 I: Downloading source for trixie/indelible=1.03-6 --2024-05-10 07:49:40-- http://deb.debian.org/debian/pool/main/i/indelible/indelible_1.03-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2145 (2.1K) [text/prs.lines.tag] Saving to: ‘indelible_1.03-6.dsc’ 0K .. 100% 280M=0s 2024-05-10 07:49:40 (280 MB/s) - ‘indelible_1.03-6.dsc’ saved [2145/2145] Fri May 10 07:49:40 UTC 2024 I: indelible_1.03-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: indelible Binary: indelible Architecture: any Version: 1.03-6 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl , Étienne Mollier Homepage: http://abacus.gene.ucl.ac.uk/software/indelible/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/indelible Vcs-Git: https://salsa.debian.org/med-team/indelible.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: indelible deb science optional arch=any Checksums-Sha1: 187d199eccb29718e76fc5992092f86214f4c6e4 196596 indelible_1.03.orig.tar.xz 2dd46f9f745dc4dd91f89de0718f396bf58d13a2 53144 indelible_1.03-6.debian.tar.xz Checksums-Sha256: 60ed2a8fd50608a56a92f708a117194d4a6d23a53e55ecc27bf76e5fdf470c80 196596 indelible_1.03.orig.tar.xz cce6a88c887930827ac2fc70ea1fb5d64066c21a579a8eec11f540db346dca18 53144 indelible_1.03-6.debian.tar.xz Files: 4a06db04f2acab8169c5b3b821759a35 196596 indelible_1.03.orig.tar.xz 5cac75afb480d511f942aefddd5c457f 53144 indelible_1.03-6.debian.tar.xz Dgit: d78219e7ebddf0c93171ba59b5ac666cf36423c8 debian archive/debian/1.03-6 https://git.dgit.debian.org/indelible -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWQXm8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrxzBAAslRf4ylggCdvdZBOwhlltuKY7LKA 08yqm94l6jXNpmWP5X9h6l13k5CO0ZpXkRCGmdxPtIAcTqiyYgO8bkcVKet0TzSW Hc0AKK1mGyDMpz3OvlA48hlJ7RB/6YwCCOOBEAJy2xd3adx+A0ZxydVXwR8AO85q 5C36parbsnEd4tPNHQv81rrjyUnVSyY6JV6kkI+CvcgsJm5DMltcJ4XEPl0SJSNg +g6fjB6DXxduSb/EZui5KlN9PMuEmo3u/9dpnU9WTqhvpX7BESECLQBqnVZHXeSi wcNnox5e9WIerJTOpAyNJ/2OiyAoZk/OL6/Oj07n7rGKZlfx6POZsdwMFTRdFY3A JgWsKN0+ywkC/ruRIjr+WpXy0MTF5y32LIA4XPBgO0oeXIJi2qZlQS22WDpqfB9r GZA7iCFqzAbM4xeOuVrkFD+DtfvhHcF0BEqg4W6D1s9bql7AKyvSIFoHuxd7aHIT Lf18f4oaY8RmccpIZaxXep9slO0ecNc30bjABffu9YvYPF+JwFYdy+Abxin8nVvk dQwAS1lBd4XsvmT/Fu4I25Vz+HhV5P74GRle4bIzUFEbQmEWODJwIzdFCAnSc2KC P6MtJ6fO5nV1m+GfLuqCFl9XR9WU7b45HdpLb5+k8NYPsdZ2iL7bY0NL+w8H4STK tX7QlS9sdbNqu9U= =jb7z -----END PGP SIGNATURE----- Fri May 10 07:49:40 UTC 2024 I: Checking whether the package is not for us Fri May 10 07:49:40 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Fri May 10 07:49:40 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Fri May 10 07:51:26 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 19:49:42 -12 2024 I: pbuilder-time-stamp: 1715327382 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 30 18:16:15 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: no acceptable signature found dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1801391/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='3545b7ffe41646908a62abeb9e911068' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1801391' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/pbuilderrc_rINq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/b1 --logfile b1/build.log indelible_1.03-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1801391/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Fetched 19.0 MB in 0s (45.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j12 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_amd64.deb'. dpkg-deb: building package 'indelible' in '../indelible_1.03-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_amd64.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1801391 and its subdirectories I: Current time: Thu May 9 19:51:25 -12 2024 I: pbuilder-time-stamp: 1715327485 Fri May 10 07:51:27 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Fri May 10 07:51:27 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Fri May 10 07:52:45 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Fri May 10 07:52:46 UTC 2024 I: indelible_1.03-6_amd64.changes: Format: 1.8 Date: Sat, 30 Dec 2023 19:11:32 +0100 Source: indelible Binary: indelible indelible-dbgsym Architecture: amd64 Version: 1.03-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: indelible - powerful and flexible simulator of biological evolution Changes: indelible (1.03-6) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: flag false positive error. Checksums-Sha1: 63708972ba0129c6346f090715da8fc0e718e292 1969580 indelible-dbgsym_1.03-6_amd64.deb 8691e56a8ce1f3e254432b26e4f5c9937820dcbf 5136 indelible_1.03-6_amd64.buildinfo 83b00a0938c660061ec9b99d15850aef1c6ca778 392012 indelible_1.03-6_amd64.deb Checksums-Sha256: 4cea534258a5a3ad124c5f315b86167b62efdf25005d51af09691ad9fc849372 1969580 indelible-dbgsym_1.03-6_amd64.deb 7102c39cb751a09728ce072612678e7d4fba66d7df98fe7c6430977d48190cda 5136 indelible_1.03-6_amd64.buildinfo e85229914fd1d5156c360d7bf5ecad9bd69f3b06728f6cf9cd55a99e7e9d4313 392012 indelible_1.03-6_amd64.deb Files: ffec3bebe667f9e3e1fc7beff8be85c5 1969580 debug optional indelible-dbgsym_1.03-6_amd64.deb 3ab94e3233d3ea435acb49f5009911f5 5136 science optional indelible_1.03-6_amd64.buildinfo 0f617fc825fec76bb7bcb81c64f4459d 392012 science optional indelible_1.03-6_amd64.deb Fri May 10 07:52:47 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-11781.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/indelible_1.03-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/indelible_1.03-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/indelible_1.03-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/b1/indelible_1.03-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eBAl0BO4/b2/indelible_1.03-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.401s) 0.401s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 750ms CPU time consumed: 744ms Fri May 10 07:52:48 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri May 10 07:52:48 UTC 2024 I: indelible from trixie built successfully and reproducibly on amd64. Fri May 10 07:52:50 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 10 07:52:50 UTC 2024 I: Submitting 8.0K b1/indelible_1.03-6_amd64.buildinfo.asc Fri May 10 07:52:51 UTC 2024 I: Submitting 8.0K b2/indelible_1.03-6_amd64.buildinfo.asc Fri May 10 07:52:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 10 07:52:52 UTC 2024 I: Done submitting .buildinfo files. Fri May 10 07:52:52 UTC 2024 I: Removing signed indelible_1.03-6_amd64.buildinfo.asc files: removed './b1/indelible_1.03-6_amd64.buildinfo.asc' removed './b2/indelible_1.03-6_amd64.buildinfo.asc'