Wed Oct 23 01:02:49 UTC 2024 I: starting to build htseq/trixie/amd64 on jenkins on '2024-10-23 01:02' Wed Oct 23 01:02:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/23646/console.log Wed Oct 23 01:02:49 UTC 2024 I: Downloading source for trixie/htseq=2.0.5-2 --2024-10-23 01:02:49-- http://deb.debian.org/debian/pool/main/h/htseq/htseq_2.0.5-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2158 (2.1K) [text/prs.lines.tag] Saving to: ‘htseq_2.0.5-2.dsc’ 0K .. 100% 280M=0s 2024-10-23 01:02:49 (280 MB/s) - ‘htseq_2.0.5-2.dsc’ saved [2158/2158] Wed Oct 23 01:02:49 UTC 2024 I: htseq_2.0.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htseq Binary: python3-htseq Architecture: any Version: 2.0.5-2 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout , Andreas Tille Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/htseq Vcs-Git: https://salsa.debian.org/med-team/htseq.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 Package-List: python3-htseq deb python optional arch=any Checksums-Sha1: d2772fd4ec94c758100796793cf7ae7361a935e8 36799405 htseq_2.0.5.orig.tar.gz ed1583c621b0b7711c91a84f09e2e14bb7d5bb61 11228 htseq_2.0.5-2.debian.tar.xz Checksums-Sha256: 2519675246dd1639115a76c9aacf19ab5bc5bed2f3598bf89cd97be5c0d066b3 36799405 htseq_2.0.5.orig.tar.gz ded8f537c65372c4d785425ef1785f48c5a695890fd4e26e53e6f2bf7f825e54 11228 htseq_2.0.5-2.debian.tar.xz Files: ce61940ea41f8d6aa90ae37e1b7a78ae 36799405 htseq_2.0.5.orig.tar.gz c8332a4203bec208d548fae78c729876 11228 htseq_2.0.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmZsawIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqv7g//Z8ukItZZ7ZGyou69Jxu1WTmjMQ0Zismw YY3SQJ8GuqOdAPTkUC+VeyZdKAqAQ/gW+Md4SXwWw7lYRIKiuzbmiDtVzUou8Igu aWt4u+AzboU2ljdQBa4m2JB2J6tBSxlU4ETHwd6SVbV5/50EuV+4AV0OW2MkcpIB ZdZvm+wAutPMtuYOkhEg31drNRXt+iaRqEjn/IKXepWIud1qfvcP40dPqz1eh3+K iAGD4+FTEftvsv7ww0Ft/2/LgyFc/LdxgyBuIY/Qufkof6HgKtAYewc/OvHqKFK4 a+jpnwrPfLFIAUkSBnFeAvUggruHfuYVC8mzm6RbTqk3uLxU3+KV0qoSTBDpgOHs NIZH7uirTFAPR3ANazhhjjMQRBUxetnP3+Foh2KadZ2fpi/iZK6A4RNpfxr6dPoA 6LdYxkjqq9T8nRz8iNVP69zmfLDr1+Cr3Q0dG+4vo0y/daXICWJMXafyusozAXAR yIMTb1cUcn5ri4PkWuK9EdWhLp1DJ8UqFtgHPPiO7tc9CG1KjgHt3q5I+Jp3JQvq XlXpHOpVPKsDbc0eR3EPBqXlWOO30WBcKDNZHSpZd88XQ3rbX5jy9aL5aj5Yha1K BNTqiqYwA7j7C4eJ4tm00+F95//jYHuPR8yevDSIiT+geE52ha7fP+2akzqCDNkp m3FxQUpWNJE= =hw6k -----END PGP SIGNATURE----- Wed Oct 23 01:02:49 UTC 2024 I: Checking whether the package is not for us Wed Oct 23 01:02:50 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Oct 23 01:02:50 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Oct 23 01:08:47 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 22 13:02:53 -12 2024 I: pbuilder-time-stamp: 1729645373 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_2.0.5-2.dsc] I: copying [./htseq_2.0.5.orig.tar.gz] I: copying [./htseq_2.0.5-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jun 14 16:08:34 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htseq_2.0.5-2.dsc: no acceptable signature found dpkg-source: info: extracting htseq in htseq-2.0.5 dpkg-source: info: unpacking htseq_2.0.5.orig.tar.gz dpkg-source: info: unpacking htseq_2.0.5-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3686109/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='68ce2cc3fa14440d9d7c979d7508edb6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3686109' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/pbuilderrc_6TXt --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/b1 --logfile b1/build.log htseq_2.0.5-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3686109/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-apt python3-bs4 python3-cssselect python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs zstd 0 packages upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 109 MB of archives. After unpacking 471 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 66 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240824 [109 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.3-1 [157 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.1-1 [1499 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 9.0.0-1 [474 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.6-1 [2147 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.6-1 [5127 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 123 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 124 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1 [232 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.6-1 [506 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b4 [309 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.0-2 [215 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 144 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 python3-debian all 0.1.49 [115 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 148 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.2-1 [4147 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.0-1 [1251 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b4 [25.2 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.51.0-1 [1416 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-2 [60.9 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 python3.12-tk amd64 3.12.6-1 [112 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.0-1 [103 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.6-1 [9428 B] Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.4.0-1 [79.4 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.8.3-3 [5560 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.1+ds-2+b1 [3474 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.2.1-1 [1437 kB] Fetched 109 MB in 4s (29.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20119 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21191 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/htseq-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htseq_2.0.5-2_source.changes dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 2.0.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htseq-2.0.5' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_py running preprocess Cython version 3.0.11 Deprecated command line option: -py3. Ignored, this option is no longer supported. creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/src x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-x86_64-cpython-312/src/_HTSeq.o -w x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/_HTSeq.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-x86_64-linux-gnu.so building 'HTSeq._StepVector' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-x86_64-cpython-312/src/StepVector_wrap.o -w x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/StepVector_wrap.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/htseq-qa -> build/scripts-3.12 copying and adjusting scripts/htseq-count -> build/scripts-3.12 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.12 changing mode of build/scripts-3.12/htseq-qa from 644 to 755 changing mode of build/scripts-3.12/htseq-count from 644 to 755 changing mode of build/scripts-3.12/htseq-count-barcodes from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build; python3.12 -m unittest discover -v /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\=' _re_vcf_meta_comment = re.compile("^##([a-zA-Z]+)\=(.*)$") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s' _re_attr_main = re.compile("\s*([^\s\=]+)[\s=]+(.*)") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s' _re_attr_empty = re.compile("^\s*$") /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s' _re_gff_meta_comment = re.compile("##\s*(\S+)\s+(\S*)") ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-htseq/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/htseq-2.0.5/debian/python3-htseq /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running preprocess Cython version 3.0.11 Deprecated command line option: -py3. Ignored, this option is no longer supported. copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-x86_64-cpython-312/src/_HTSeq.o -w x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/_HTSeq.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-x86_64-linux-gnu.so building 'HTSeq._StepVector' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-x86_64-cpython-312/src/StepVector_wrap.o -w x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/src/StepVector_wrap.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-x86_64-linux-gnu.so running build_scripts running install_lib creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12 creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StretchVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StepVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/features.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.5/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\=' byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count.py to count.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/qa.py to qa.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StepVector.py to StepVector.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/features.py to features.cpython-312.pyc /usr/lib/python3.12/dist-packages/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-312.pyc running install_egg_info running egg_info creating HTSeq.egg-info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt writing manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' adding license file 'LICENSE' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq-2.0.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count-barcodes -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-qa -> /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/reproducible-path/htseq-2.0.5/debian/python3-htseq/usr/bin/htseq-qa to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/htseq-2.0.5' dh_python3 dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.5' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-312-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 528428 new size 530148 dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-312-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 1224272 new size 1226671 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_2.0.5-2_amd64.deb'. dpkg-deb: building package 'python3-htseq' in '../python3-htseq_2.0.5-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../htseq_2.0.5-2_amd64.buildinfo dpkg-genchanges --build=binary -O../htseq_2.0.5-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3686109 and its subdirectories I: Current time: Tue Oct 22 13:08:46 -12 2024 I: pbuilder-time-stamp: 1729645726 Wed Oct 23 01:08:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Oct 23 01:08:48 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Oct 23 01:13:44 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Oct 23 01:13:45 UTC 2024 I: htseq_2.0.5-2_amd64.changes: Format: 1.8 Date: Fri, 14 Jun 2024 18:06:39 +0200 Source: htseq Binary: python3-htseq python3-htseq-dbgsym Architecture: amd64 Version: 2.0.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Changes: htseq (2.0.5-2) unstable; urgency=medium . * Team upload. * Remove stale 2to3 dependency. Checksums-Sha1: 456d860e6cd8c37a22e8f0a404bc5c2a68f7c544 9503 htseq_2.0.5-2_amd64.buildinfo 5852a04eed62e76b513ee05882c16afb45808fa8 1714584 python3-htseq-dbgsym_2.0.5-2_amd64.deb 2738ca7d7c5ae314057a4c934207d02a09152ae3 317624 python3-htseq_2.0.5-2_amd64.deb Checksums-Sha256: ca73df1ca52fb569fafedf5ad6b6e64e1851f88136609db3675b7ddab7fc732a 9503 htseq_2.0.5-2_amd64.buildinfo ef900a492fe9e608519cab151c2d08034daca76dfda09269a4ce12b6b6eeb11c 1714584 python3-htseq-dbgsym_2.0.5-2_amd64.deb 955efc35e0327cad5e14242d4201bb2df57b68bb39ef56d7f4c879878184790f 317624 python3-htseq_2.0.5-2_amd64.deb Files: 43f20ba3aa717e3f5a0493d8b8cab242 9503 python optional htseq_2.0.5-2_amd64.buildinfo c9ed053b1f1f16fd47ec3d1d10bffa78 1714584 debug optional python3-htseq-dbgsym_2.0.5-2_amd64.deb 2fec400e7efc022278f38b21c29e6c2b 317624 python optional python3-htseq_2.0.5-2_amd64.deb Wed Oct 23 01:13:46 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_31-23646.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/htseq_2.0.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/htseq_2.0.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/htseq_2.0.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/b1/htseq_2.0.5-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RLF2t1O7/b2/htseq_2.0.5-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.410s) 0.410s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 748ms CPU time consumed: 747ms Wed Oct 23 01:13:47 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 23 01:13:47 UTC 2024 I: htseq from trixie built successfully and reproducibly on amd64. Wed Oct 23 01:13:49 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Oct 23 01:13:49 UTC 2024 I: Submitting 12K b1/htseq_2.0.5-2_amd64.buildinfo.asc Wed Oct 23 01:13:50 UTC 2024 I: Submitting 12K b2/htseq_2.0.5-2_amd64.buildinfo.asc Wed Oct 23 01:13:51 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Oct 23 01:13:51 UTC 2024 I: Done submitting .buildinfo files. Wed Oct 23 01:13:51 UTC 2024 I: Removing signed htseq_2.0.5-2_amd64.buildinfo.asc files: removed './b1/htseq_2.0.5-2_amd64.buildinfo.asc' removed './b2/htseq_2.0.5-2_amd64.buildinfo.asc'