Mon May 20 22:17:41 UTC 2024 I: starting to build harvest-tools/trixie/amd64 on jenkins on '2024-05-20 22:17' Mon May 20 22:17:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/10191/console.log Mon May 20 22:17:41 UTC 2024 I: Downloading source for trixie/harvest-tools=1.3-8 --2024-05-20 22:17:41-- http://deb.debian.org/debian/pool/main/h/harvest-tools/harvest-tools_1.3-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2139 (2.1K) [text/prs.lines.tag] Saving to: ‘harvest-tools_1.3-8.dsc’ 0K .. 100% 258M=0s 2024-05-20 22:17:41 (258 MB/s) - ‘harvest-tools_1.3-8.dsc’ saved [2139/2139] Mon May 20 22:17:41 UTC 2024 I: harvest-tools_1.3-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: harvest-tools Binary: harvest-tools Architecture: any Version: 1.3-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://harvest.readthedocs.org/en/latest/content/harvest-tools.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/harvest-tools Vcs-Git: https://salsa.debian.org/med-team/harvest-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cython3, python3-setuptools, protobuf-compiler, capnproto, libprotobuf-dev, libcapnp-dev, zlib1g-dev Package-List: harvest-tools deb science optional arch=any Checksums-Sha1: 9844afb4bd74918bd1fac45f758bc40e46776d0d 3751637 harvest-tools_1.3.orig.tar.gz b508c70fd7fa5748d9257a0fa0e58aee6349be8e 7176 harvest-tools_1.3-8.debian.tar.xz Checksums-Sha256: ffbcf0a115c74507695fd6cee4a9d5ba27a700db36b32d226521ef8dd3309264 3751637 harvest-tools_1.3.orig.tar.gz ed100cba93ed91bda4405ce1a8dbc7a529131d4c1c38e66f303190c4d6dee8d9 7176 harvest-tools_1.3-8.debian.tar.xz Files: bd7f862a086e4a44987921f113a5760e 3751637 harvest-tools_1.3.orig.tar.gz eaaf4df74be0e7b75bfb15fffb0e2419 7176 harvest-tools_1.3-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLeZzMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEG9Q/7B6csTgqYmpri175byNYvGbUkIdwqEju6 kf/Uizvsdo2CT5i0/MvgU3NgQO40qQPDmSs8oVC+/1hGt4W9v8xyjetfJzo22YL+ VSh4sBAsIUKQJ6bjTSrBXd7UMcHi925/EKcymTO20sCO2ZM3Ft5FOKPbhGp/fcE+ 7ovMl6rb7HQSoN//J+hujg/CIRyUBKPwiPkWL0FTjzsiLkI/kZ0IAlbVmVgHDyGq mSakATCkxP8IOCQx3Tx1PL+Fdlu33abZubqby7zgFfhh6HlAstA9kFdIy5P4wfBG Mw9ChGs9DAB9JLry0zPF1xvWbKaYhErk/ZoBjAmis9NAPMy4NxToNy1TwDBAPCOI DKOYF+ogvBcqVoxd2o4ZLMnageCjQL09DEwDxxTLpit0pyxIvgyV83itAPdXMtIH f3FTUYLmSN2lEPP/xQ5i4AVKh89S6PCcgG2vsPWUta+l8Ow2hev34stn/pSLxREp J6Ds/PIhhGVSPJPZni519GCdBG3Izo/TGCzQIBZKgWfNyd8zfZCSrMVkCvTZE2oU 1k39/OMHjSxJEZjW584iXqyKmWd3FtcTDsf7F4oz440lzxbS5TAKbgTHPj3zrcdC q1ALPMa/uU/BhQtrTte8M08E0DHQRr22BStKr7RYIWNUamq/FD0wdHApy4TrmgXh /XAiYrhG14I= =sDDZ -----END PGP SIGNATURE----- Mon May 20 22:17:41 UTC 2024 I: Checking whether the package is not for us Mon May 20 22:17:41 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Mon May 20 22:17:41 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Mon May 20 22:19:58 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 22 16:40:43 -12 2025 I: pbuilder-time-stamp: 1750653643 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [harvest-tools_1.3-8.dsc] I: copying [./harvest-tools_1.3.orig.tar.gz] I: copying [./harvest-tools_1.3-8.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jul 25 09:49:39 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./harvest-tools_1.3-8.dsc: no acceptable signature found dpkg-source: info: extracting harvest-tools in harvest-tools-1.3 dpkg-source: info: unpacking harvest-tools_1.3.orig.tar.gz dpkg-source: info: unpacking harvest-tools_1.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_readme_in_setup.patch dpkg-source: info: applying dynamic_linking.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying remove_memwrap.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying use-c++-14.patch dpkg-source: info: applying python-2to3.patch dpkg-source: info: applying protobuf-3.20.1.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2742600/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fef16c95ebfa4559ab0b16c98a94ed79' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2742600' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/pbuilderrc_5Ctk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/b1 --logfile b1/build.log harvest-tools_1.3-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 22 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2742600/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3, python3-setuptools, protobuf-compiler, capnproto, libprotobuf-dev, libcapnp-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on capnproto; however: Package capnproto is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on libcapnp-dev; however: Package libcapnp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} capnproto{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcapnp-1.0.1{a} libcapnp-dev{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libparams-util-perl{a} libpipeline1{a} libprotobuf-dev{a} libprotobuf-lite32t64{a} libprotobuf32t64{a} libprotoc32t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} protobuf-compiler{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-dev wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 40.2 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.1-1 [94.1 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libcapnp-1.0.1 amd64 1.0.1-4 [1460 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 capnproto amd64 1.0.1-4 [247 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libsub-prototype-perl amd64 0.03-2+b2 [9744 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.11-1 [10.4 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libcapnp-dev amd64 1.0.1-4 [1976 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libprotobuf32t64 amd64 3.21.12-8.2 [963 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libprotobuf-lite32t64 amd64 3.21.12-8.2 [273 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libprotobuf-dev amd64 3.21.12-8.2 [1306 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libprotoc32t64 amd64 3.21.12-8.2 [864 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 protobuf-compiler amd64 3.21.12-8.2 [84.4 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Fetched 40.2 MB in 2s (17.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20017 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 23 04:42:17 UTC 2025. Universal Time is now: Mon Jun 23 04:42:17 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up capnproto (1.0.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libssl-dev:amd64 (3.2.1-3) ... Setting up autopoint (0.21-14) ... Setting up libparams-util-perl (1.102-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libprotoc32t64:amd64 (3.21.12-8.2) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libcapnp-dev:amd64 (1.0.1-4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-14+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/harvest-tools-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../harvest-tools_1.3-8_source.changes dpkg-buildpackage: info: source package harvest-tools dpkg-buildpackage: info: source version 1.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' if [ -f Makefile ] ; then make clean ; fi make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:58: warning: AC_OUTPUT should be used without arguments. configure.ac:58: You should run autoupdate. debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_configure -- --with-protobuf=/usr --with-capnp=/usr ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-protobuf=/usr --with-capnp=/usr checking for protoc... yes checking for capnp... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for google/protobuf/stubs/common.h... yes checking for capnp/common.h... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating Makefile make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' cd src; /usr/bin/protoc --cpp_out . harvest/pb/harvest.proto cd src/harvest/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ harvest.capnp [libprotobuf WARNING google/protobuf/compiler/parser.cc:646] No syntax specified for the proto file: harvest/pb/harvest.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/pb/harvest.pb.o src/harvest/pb/harvest.pb.cc g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/AnnotationList.o src/harvest/AnnotationList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/harvest.o src/harvest/harvest.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/HarvestIO.o src/harvest/HarvestIO.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/LcbList.o src/harvest/LcbList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/parse.o src/harvest/parse.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/PhylogenyTree.o src/harvest/PhylogenyTree.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/PhylogenyTreeNode.o src/harvest/PhylogenyTreeNode.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/ReferenceList.o src/harvest/ReferenceList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/TrackList.o src/harvest/TrackList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/VariantList.o src/harvest/VariantList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/capnp/harvest.capnp.o src/harvest/capnp/harvest.capnp.c++ src/harvest/HarvestIO.cpp: In member function 'bool HarvestIO::loadHarvestCapnp(const char*)': src/harvest/HarvestIO.cpp:119:21: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | read(fd, buffer, capnpHeaderLength); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/harvest/HarvestIO.cpp:139:30: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | write(fds[1], buffer, bytesRead); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/harvest/HarvestIO.cpp: In member function 'void HarvestIO::writeHarvest(const char*)': src/harvest/HarvestIO.cpp:325:22: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 325 | write(fd, capnpHeader, capnpHeaderLength); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o harvesttools src/harvest/AnnotationList.o src/harvest/harvest.o src/harvest/HarvestIO.o src/harvest/LcbList.o src/harvest/parse.o src/harvest/PhylogenyTree.o src/harvest/PhylogenyTreeNode.o src/harvest/ReferenceList.o src/harvest/TrackList.o src/harvest/VariantList.o src/harvest/pb/harvest.pb.o src/harvest/capnp/harvest.capnp.o -lprotobuf -lcapnp -lkj -lstdc++ -lz -lm -lpthread -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' echo "do nothing since upstream is just symlinking against build tree" do nothing since upstream is just symlinking against build tree make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'harvest-tools' in '../harvest-tools_1.3-8_amd64.deb'. dpkg-deb: building package 'harvest-tools-dbgsym' in '../harvest-tools-dbgsym_1.3-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../harvest-tools_1.3-8_amd64.buildinfo dpkg-genchanges --build=binary -O../harvest-tools_1.3-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2742600 and its subdirectories I: Current time: Sun Jun 22 16:42:57 -12 2025 I: pbuilder-time-stamp: 1750653777 Mon May 20 22:19:58 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Mon May 20 22:19:58 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Mon May 20 22:21:12 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Mon May 20 22:21:13 UTC 2024 I: harvest-tools_1.3-8_amd64.changes: Format: 1.8 Date: Mon, 25 Jul 2022 11:27:58 +0200 Source: harvest-tools Binary: harvest-tools harvest-tools-dbgsym Architecture: amd64 Version: 1.3-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: harvest-tools - archiving and postprocessing for reference-compressed genomic mul Closes: 1012573 Changes: harvest-tools (1.3-8) unstable; urgency=medium . [ László Böszörményi ] * Build with protobuf 3.20.1+ Closes: #1012573 . [ Andreas Tille ] * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 00d64f392aa2d537e870c4348d7a49755e68fc80 2402968 harvest-tools-dbgsym_1.3-8_amd64.deb 82e728e18aefe96a6deab8e4f819af7eaeb79dcd 6273 harvest-tools_1.3-8_amd64.buildinfo 7209df02124fb3a6cc82aadeac953c6fa88856d4 152188 harvest-tools_1.3-8_amd64.deb Checksums-Sha256: 7575b31c085d83f9a65cd0caccdeba2d84ef8e6ca1fc088b59b1f6bb5c21f90c 2402968 harvest-tools-dbgsym_1.3-8_amd64.deb 2780d5b7dd7e0fe22e4c32280b6a4833b6d79d352c1fcaf2e35c55aab7d06be1 6273 harvest-tools_1.3-8_amd64.buildinfo ad8a317d8a767b7275ea03bcd0d9af9ef2ac1a6ebb00297b99ca0f5bef6978ae 152188 harvest-tools_1.3-8_amd64.deb Files: 64ea9947fcd1cead339b849dd8563ed0 2402968 debug optional harvest-tools-dbgsym_1.3-8_amd64.deb 03fa92bd294ee02e96311da70082dad9 6273 science optional harvest-tools_1.3-8_amd64.buildinfo aae246d94838c87558826b49a7a95bba 152188 science optional harvest-tools_1.3-8_amd64.deb Mon May 20 22:21:14 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-10191.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/harvest-tools_1.3-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/harvest-tools_1.3-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/harvest-tools_1.3-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/b1/harvest-tools_1.3-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YXxJ88mO/b2/harvest-tools_1.3-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.600s) 0.600s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.055s) 0.055s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.138s CPU time consumed: 1.139s Mon May 20 22:21:16 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Mon May 20 22:21:16 UTC 2024 I: harvest-tools from trixie built successfully and reproducibly on amd64. Mon May 20 22:21:17 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 20 22:21:17 UTC 2024 I: Submitting 8.0K b1/harvest-tools_1.3-8_amd64.buildinfo.asc Mon May 20 22:21:18 UTC 2024 I: Submitting 8.0K b2/harvest-tools_1.3-8_amd64.buildinfo.asc Mon May 20 22:21:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 20 22:21:18 UTC 2024 I: Done submitting .buildinfo files. Mon May 20 22:21:18 UTC 2024 I: Removing signed harvest-tools_1.3-8_amd64.buildinfo.asc files: removed './b1/harvest-tools_1.3-8_amd64.buildinfo.asc' removed './b2/harvest-tools_1.3-8_amd64.buildinfo.asc'