Fri Nov 15 19:48:32 UTC 2024 I: starting to build golang-github-biogo-hts/trixie/amd64 on jenkins on '2024-11-15 19:48' Fri Nov 15 19:48:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/37311/console.log Fri Nov 15 19:48:32 UTC 2024 I: Downloading source for trixie/golang-github-biogo-hts=1.4.5+dfsg1-1 --2024-11-15 19:48:32-- http://deb.debian.org/debian/pool/main/g/golang-github-biogo-hts/golang-github-biogo-hts_1.4.5%2bdfsg1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1697 (1.7K) [text/prs.lines.tag] Saving to: ‘golang-github-biogo-hts_1.4.5+dfsg1-1.dsc’ 0K . 100% 160M=0s 2024-11-15 19:48:32 (160 MB/s) - ‘golang-github-biogo-hts_1.4.5+dfsg1-1.dsc’ saved [1697/1697] Fri Nov 15 19:48:32 UTC 2024 I: golang-github-biogo-hts_1.4.5+dfsg1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: golang-github-biogo-hts Binary: golang-github-biogo-hts-dev Architecture: all Version: 1.4.5+dfsg1-1 Maintainer: Debian Go Packaging Team Uploaders: Shengjing Zhu , Nilesh Patra Homepage: https://github.com/biogo/hts Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/go-team/packages/golang-github-biogo-hts Vcs-Git: https://salsa.debian.org/go-team/packages/golang-github-biogo-hts.git Testsuite: autopkgtest-pkg-go Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-ulikunitz-xz-dev, golang-gopkg-check.v1-dev Package-List: golang-github-biogo-hts-dev deb golang optional arch=all Checksums-Sha1: 7599a74fe9974568cd6032af92afe52273c65661 322488 golang-github-biogo-hts_1.4.5+dfsg1.orig.tar.xz 8fe9aa8873a987a24d997934bbe58236ab477893 4356 golang-github-biogo-hts_1.4.5+dfsg1-1.debian.tar.xz Checksums-Sha256: 6ff4a7eb8601e18f24c52fc045c0200f010b1525b9f4b1437104a911595457e1 322488 golang-github-biogo-hts_1.4.5+dfsg1.orig.tar.xz 6fca12a092a8a20877db8db15fe4a2f57713e3d48676469ef81e28fa2aefb1c4 4356 golang-github-biogo-hts_1.4.5+dfsg1-1.debian.tar.xz Files: a92f698234b9b74d1c63476449bc9c72 322488 golang-github-biogo-hts_1.4.5+dfsg1.orig.tar.xz ecda6d377428dfc2bf84b60951d91dbf 4356 golang-github-biogo-hts_1.4.5+dfsg1-1.debian.tar.xz Go-Import-Path: github.com/biogo/hts -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZoqOFgAKCRAqJ5BL1yQ+ 2u8hAQC5K0O/aOTXjhb39ioBqQ2dcmDrRhYE/LDHnumpKtTBhwEA4C7vMnIq1fzn JV2B6ZucqtwkJe+AL/prhEQZAeGREwA= =5hMZ -----END PGP SIGNATURE----- Fri Nov 15 19:48:32 UTC 2024 I: Checking whether the package is not for us Fri Nov 15 19:48:32 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Nov 15 19:48:32 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Nov 15 19:50:26 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 18 14:11:31 -12 2025 I: pbuilder-time-stamp: 1766110291 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [golang-github-biogo-hts_1.4.5+dfsg1-1.dsc] I: copying [./golang-github-biogo-hts_1.4.5+dfsg1.orig.tar.xz] I: copying [./golang-github-biogo-hts_1.4.5+dfsg1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 7 12:46:14 2024 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./golang-github-biogo-hts_1.4.5+dfsg1-1.dsc: no acceptable signature found dpkg-source: info: extracting golang-github-biogo-hts in golang-github-biogo-hts-1.4.5+dfsg1 dpkg-source: info: unpacking golang-github-biogo-hts_1.4.5+dfsg1.orig.tar.xz dpkg-source: info: unpacking golang-github-biogo-hts_1.4.5+dfsg1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Disable-test-which-needs-network.patch dpkg-source: info: applying 0002-Only-run-TestFuzzCrashers-on-amd64.patch dpkg-source: info: applying 0003-Skip-list-example-test.patch dpkg-source: info: applying 0004-check-same-tempdir.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/452412/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9ff0199a4c5a41ffbe1d80382b6f7fca' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='452412' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/pbuilderrc_xOkz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/b1 --logfile b1/build.log golang-github-biogo-hts_1.4.5+dfsg1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/452412/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-ulikunitz-xz-dev, golang-gopkg-check.v1-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-ulikunitz-xz-dev; however: Package golang-github-ulikunitz-xz-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however: Package golang-gopkg-check.v1-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.23-go{a} golang-1.23-src{a} golang-any{a} golang-github-creack-pty-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx pkgconf wget 0 packages upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 75.4 MB of archives. After unpacking 392 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 dh-golang all 1.62 [24.7 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 golang-1.23-src all 1.23.3-2 [19.1 MB] Get: 32 http://deb.debian.org/debian trixie/main amd64 golang-1.23-go amd64 1.23.3-2 [27.0 MB] Get: 33 http://deb.debian.org/debian trixie/main amd64 golang-src all 2:1.23~2 [5088 B] Get: 34 http://deb.debian.org/debian trixie/main amd64 golang-go amd64 2:1.23~2 [44.3 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 golang-any amd64 2:1.23~2 [5172 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-mod-dev all 0.19.0-1 [104 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-sys-dev all 0.22.0-1 [431 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-term-dev all 0.22.0-1 [14.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-text-dev all 0.16.0-1 [4003 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-net-dev all 1:0.27.0-1 [898 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 golang-golang-x-tools-dev all 1:0.23.0+ds-1 [1593 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Fetched 75.4 MB in 1s (71.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-hts dpkg-buildpackage: info: source version 1.4.5+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=golang --with=golang dh_auto_clean -O--buildsystem=golang dh_autoreconf_clean -O--buildsystem=golang dh_clean -O--buildsystem=golang debian/rules binary dh binary --buildsystem=golang --with=golang dh_update_autotools_config -O--buildsystem=golang dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang cd obj-x86_64-linux-gnu && go install -trimpath -v -p 42 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix internal/byteorder internal/coverage/rtcov internal/unsafeheader unicode/utf8 cmp internal/itoa internal/asan math/bits internal/msan github.com/ulikunitz/xz/internal/hash internal/goos internal/godebugs internal/goarch internal/race internal/profilerecord internal/goexperiment internal/runtime/syscall internal/cpu internal/runtime/atomic unicode sync/atomic runtime/internal/math runtime/internal/sys internal/abi internal/chacha8rand github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/cram/encoding/itf8 internal/bytealg math internal/runtime/exithook internal/stringslite runtime iter internal/reflectlite sync slices internal/bisect internal/testlog errors sort internal/oserror path io strconv internal/godebug syscall hash bytes strings container/heap hash/crc32 reflect bufio compress/bzip2 internal/syscall/execenv internal/syscall/unix time io/fs internal/poll internal/filepathlite internal/fmtsort encoding/binary os fmt encoding/hex github.com/ulikunitz/xz/internal/xlog net/url encoding/csv compress/flate github.com/biogo/hts/fai github.com/ulikunitz/xz/lzma compress/gzip github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/index github.com/biogo/hts/bgzf/cache github.com/biogo/hts/internal github.com/biogo/hts/csi github.com/biogo/hts/tabix github.com/biogo/hts/sam github.com/biogo/hts/bam github.com/biogo/hts/cram dh_auto_test -O--buildsystem=golang cd obj-x86_64-linux-gnu && go test -vet=off -v -p 42 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix ? github.com/biogo/hts/bgzf/cache [no test files] ? github.com/biogo/hts/cram [no test files] ? github.com/biogo/hts/internal [no test files] === RUN Test OK: 15 passed --- PASS: Test (0.07s) === RUN TestFuzzCrashers --- PASS: TestFuzzCrashers (0.88s) === RUN TestMerger --- PASS: TestMerger (0.07s) PASS ok github.com/biogo/hts/bam 1.028s === RUN TestEmpty --- PASS: TestEmpty (0.00s) === RUN TestEOF --- PASS: TestEOF (0.00s) === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestRoundTripMulti --- PASS: TestRoundTripMulti (0.00s) === RUN TestHeaderIssue57 --- PASS: TestHeaderIssue57 (0.00s) === RUN TestRoundTripMultiSeek --- PASS: TestRoundTripMultiSeek (0.00s) === RUN TestSeekErrorDeadlock --- PASS: TestSeekErrorDeadlock (0.00s) === RUN TestSeekFast --- PASS: TestSeekFast (0.02s) === RUN TestCache --- PASS: TestCache (0.15s) === RUN TestBlocked --- PASS: TestBlocked (0.00s) === RUN TestFuzzCrashers --- PASS: TestFuzzCrashers (0.01s) === RUN TestZeroNonZero --- PASS: TestZeroNonZero (0.00s) === RUN TestWriteByteCount --- PASS: TestWriteByteCount (0.00s) === RUN TestSeekCacheReadahead --- PASS: TestSeekCacheReadahead (0.10s) PASS ok github.com/biogo/hts/bgzf 0.292s === RUN Test OK: 3 passed --- PASS: Test (0.01s) PASS ok github.com/biogo/hts/bgzf/index 0.019s === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestKnownValues --- PASS: TestKnownValues (0.00s) PASS ok github.com/biogo/hts/cram/encoding/itf8 0.003s === RUN TestInt64RoundTrip --- PASS: TestInt64RoundTrip (0.00s) PASS ok github.com/biogo/hts/cram/encoding/ltf8 0.003s === RUN Test OK: 3 passed --- PASS: Test (0.00s) PASS ok github.com/biogo/hts/csi 0.005s === RUN TestNewIndex --- PASS: TestNewIndex (0.00s) === RUN TestReadFrom --- PASS: TestReadFrom (0.00s) === RUN TestWriteTo --- PASS: TestWriteTo (0.00s) === RUN TestFile --- PASS: TestFile (0.00s) PASS ok github.com/biogo/hts/fai 0.004s === RUN Test OK: 20 passed --- PASS: Test (0.01s) === RUN TestSeqAt --- PASS: TestSeqAt (0.00s) === RUN ExampleConsume --- PASS: ExampleConsume (0.00s) PASS ok github.com/biogo/hts/sam 0.010s === RUN Test OK: 1 passed --- PASS: Test (0.00s) PASS ok github.com/biogo/hts/tabix 0.005s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang dh_auto_install --destdir=debian/golang-github-biogo-hts-dev/ -O--buildsystem=golang dh_installdocs -O--buildsystem=golang dh_installchangelogs -O--buildsystem=golang dh_installsystemduser -O--buildsystem=golang dh_perl -O--buildsystem=golang dh_link -O--buildsystem=golang dh_strip_nondeterminism -O--buildsystem=golang dh_compress -O--buildsystem=golang dh_fixperms -O--buildsystem=golang dh_missing -O--buildsystem=golang dh_installdeb -O--buildsystem=golang dh_golang -O--buildsystem=golang dh_gencontrol -O--buildsystem=golang dpkg-gencontrol: warning: Depends field of package golang-github-biogo-hts-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang dpkg-deb: building package 'golang-github-biogo-hts-dev' in '../golang-github-biogo-hts-dev_1.4.5+dfsg1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/452412 and its subdirectories I: Current time: Thu Dec 18 14:13:22 -12 2025 I: pbuilder-time-stamp: 1766110402 Fri Nov 15 19:50:27 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Nov 15 19:50:27 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Nov 15 19:54:50 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Nov 15 19:54:51 UTC 2024 I: golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.changes: Format: 1.8 Date: Sun, 07 Jul 2024 17:57:44 +0530 Source: golang-github-biogo-hts Binary: golang-github-biogo-hts-dev Architecture: all Version: 1.4.5+dfsg1-1 Distribution: unstable Urgency: medium Maintainer: Debian Go Packaging Team Changed-By: Nilesh Patra Description: golang-github-biogo-hts-dev - biogo high throughput sequencing repository Changes: golang-github-biogo-hts (1.4.5+dfsg1-1) unstable; urgency=medium . * New upstream version 1.4.5+dfsg1 * Bump Standards-Version to 4.7.0 (no changes needed) * Add patch to fixup tests Checksums-Sha1: 6a951bb38b6503cc652a14e8b36b261e1839b57d 318740 golang-github-biogo-hts-dev_1.4.5+dfsg1-1_all.deb 152f22ce92c693da9653508d461562dcded0382e 5622 golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo Checksums-Sha256: 483d2bee836f42b4f43c01ddc468bb99d3e2a555a2ccb5cb043443d7610cdbbf 318740 golang-github-biogo-hts-dev_1.4.5+dfsg1-1_all.deb 9ad2fd80e391de76bd594720fd0588a774dac2daabac3d53f2b32a44451b11ba 5622 golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo Files: 54bbcc8b8533465613d6716202103cca 318740 golang optional golang-github-biogo-hts-dev_1.4.5+dfsg1-1_all.deb 28dced957e7b92747806e5cfacb19684 5622 golang optional golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo Fri Nov 15 19:54:52 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_12-37311.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/golang-github-biogo-hts_1.4.5+dfsg1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/golang-github-biogo-hts_1.4.5+dfsg1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/golang-github-biogo-hts_1.4.5+dfsg1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/b1/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GjLw6yKa/b2/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.331s) 0.331s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 623ms CPU time consumed: 622ms Fri Nov 15 19:54:53 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 15 19:54:53 UTC 2024 I: golang-github-biogo-hts from trixie built successfully and reproducibly on amd64. Fri Nov 15 19:54:54 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 15 19:54:54 UTC 2024 I: Submitting 8.0K b1/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo.asc Fri Nov 15 19:54:55 UTC 2024 I: Submitting 8.0K b2/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo.asc Fri Nov 15 19:54:55 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 15 19:54:55 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 15 19:54:55 UTC 2024 I: Removing signed golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo.asc files: removed './b1/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo.asc' removed './b2/golang-github-biogo-hts_1.4.5+dfsg1-1_amd64.buildinfo.asc'