Sat May 11 17:25:02 UTC 2024 I: starting to build flye/trixie/amd64 on jenkins on '2024-05-11 17:24' Sat May 11 17:25:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/6433/console.log Sat May 11 17:25:02 UTC 2024 I: Downloading source for trixie/flye=2.9.3+dfsg2-1 --2024-05-11 17:25:02-- http://deb.debian.org/debian/pool/main/f/flye/flye_2.9.3%2bdfsg2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2110 (2.1K) [text/prs.lines.tag] Saving to: ‘flye_2.9.3+dfsg2-1.dsc’ 0K .. 100% 40.2M=0s 2024-05-11 17:25:03 (40.2 MB/s) - ‘flye_2.9.3+dfsg2-1.dsc’ saved [2110/2110] Sat May 11 17:25:03 UTC 2024 I: flye_2.9.3+dfsg2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: flye Binary: flye Architecture: any Version: 2.9.3+dfsg2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/fenderglass/Flye Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/flye Vcs-Git: https://salsa.debian.org/med-team/flye.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, liblemon-dev, libminimap2-dev, samtools, zlib1g-dev Package-List: flye deb science optional arch=any Checksums-Sha1: a47bc0582541c9e1c44fa1b9629deb2187499706 22760396 flye_2.9.3+dfsg2.orig.tar.xz 154699215b08f3f3346750d16f62d5cbc52ac4c7 14404 flye_2.9.3+dfsg2-1.debian.tar.xz Checksums-Sha256: 2a71e7420055bffa95fb1200209cf180ed741137b4e60587ecec9cf962326f73 22760396 flye_2.9.3+dfsg2.orig.tar.xz 02d11ec9c4a9458263c20bbac1a83749374332bd42ede9c58983fe4eef435640 14404 flye_2.9.3+dfsg2-1.debian.tar.xz Files: 2dc92944cd1831fc7989d3ae54722478 22760396 flye_2.9.3+dfsg2.orig.tar.xz 45bf933f804f08c453fd1b7e5317ad88 14404 flye_2.9.3+dfsg2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmW88+URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHhNA/6A9j1ah0xxK0/4zPFV7itmcLeK7TW3wdn cHHISplmIh/OwoJP/bRVRKqtdWsY6djk0DzMPqQMD4BBJQuTsLiCzT0qklqgCVI4 F7QaX1+k5sY4m1gXUg5Cy4XJTfUfRMVyCgO1iS8tOudJAkh52wL1pWbDtQGAkBRu oJUm9mXiAfcSYiJ01JX8fjSTqqdJG8JY6I8UcusHUbEc11wiug/TPa+6++pZf6ib unRtjyAr8ZT4RrDqFiLoXtIvqJSfG2SF4XojGO5lc9oS+rixRQjs4JpHpq9jIq8X p6m3aK9jmPe3aSHJsBFPTt5UBcv+0MsiqpsZtbP/74+PDUIdy9TfSX+a2fQ0OBpx zy+/FoNmbVNtzC5szMOCzmo2pAYJ6EIAh58fL2BvrWzWPuRaAAIm+IwVNtRW/8Bt c8wokWgf1nfJpCifNGT+KEe11+50ZthQ62qUWYwDTFVrPZqLvVE+E0xADdMx7hYO d0l67E81a0p8cbb6+Y5ik3XHtl5J5fn9dQS0Aq4yy88OX5i8eOwPop9dAM9eqCKr jQGJ7H0biBf3NIet1W0Qy/G8iitrQOev4+/P7Abtme4dPtTHNq8bbeNcLD/I5lrb qS6iS7XQjC9pWbwZXqZqaGSTAt161khvyOAc95ltvK19LjfaR20MgdzUlgR7WoHX 6AWW+CUMsh0= =vXxr -----END PGP SIGNATURE----- Sat May 11 17:25:03 UTC 2024 I: Checking whether the package is not for us Sat May 11 17:25:03 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat May 11 17:25:03 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat May 11 17:26:52 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 13 11:48:06 -12 2025 I: pbuilder-time-stamp: 1749858486 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [flye_2.9.3+dfsg2-1.dsc] I: copying [./flye_2.9.3+dfsg2.orig.tar.xz] I: copying [./flye_2.9.3+dfsg2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 2 13:53:41 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./flye_2.9.3+dfsg2-1.dsc: no acceptable signature found dpkg-source: info: extracting flye in flye-2.9.3+dfsg2 dpkg-source: info: unpacking flye_2.9.3+dfsg2.orig.tar.xz dpkg-source: info: unpacking flye_2.9.3+dfsg2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying cppflags.patch dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3069005/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='21852f7d6a6f47179f5cd88880444ff2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3069005' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/pbuilderrc_9h8J --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/b1 --logfile b1/build.log flye_2.9.3+dfsg2-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 13 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3069005/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, liblemon-dev, libminimap2-dev, samtools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19700 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on liblemon-dev; however: Package liblemon-dev is not installed. pbuilder-satisfydepends-dummy depends on libminimap2-dev; however: Package libminimap2-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libbrotli1{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglpk40{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblemon-dev{a} liblemon1.3.1{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libminimap2-dev{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libsuitesparseconfig7{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 31.5 MB of archives. After unpacking 118 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 57 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 liblemon1.3.1 amd64 1.3.1+dfsg-6+b1 [55.3 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 liblemon-dev amd64 1.3.1+dfsg-6+b1 [325 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libminimap2-dev amd64 2.27+dfsg-1 [129 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] Fetched 31.5 MB in 0s (88.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up liblemon-dev (1.3.1+dfsg-6+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up samtools (1.19.2-1+b1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/flye-2.9.3+dfsg2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flye_2.9.3+dfsg2-1_source.changes dpkg-buildpackage: info: source package flye dpkg-buildpackage: info: source version 2.9.3+dfsg2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it find src -name "*.o" -delete rm -f bin/flye-modules rm -rf flye.egg-info/ make[1]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye copying flye/__version__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye copying flye/__build__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye copying flye/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye copying flye/main.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly copying flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly copying flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly copying flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly copying flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config copying flye/config/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config copying flye/config/configurator.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing copying flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing copying flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing copying flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils copying flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils copying flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils copying flye/utils/utils.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils copying flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph copying flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph copying flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph copying flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids copying flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids copying flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids copying flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids copying flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle copying flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle copying flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle copying flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle copying flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests copying flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data copying flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data copying flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data copying flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data make[1]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2' make release -C src -j 4 make[2]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/chimera.cpp -o assemble/chimera.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/extender.cpp -o assemble/extender.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/main_assemble.cpp -o assemble/main_assemble.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG assemble/parameters_estimator.cpp -o assemble/parameters_estimator.o assemble/main_assemble.cpp:214:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 214 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ assemble/main_assemble.cpp:214:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 214 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/alignment.cpp -o sequence/alignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/consensus_generator.cpp -o sequence/consensus_generator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/edlib.cpp -o sequence/edlib.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/overlap.cpp -o sequence/overlap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence.cpp -o sequence/sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence_container.cpp -o sequence/sequence_container.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/vertex_index.cpp -o sequence/vertex_index.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/graph_processing.cpp -o repeat_graph/graph_processing.o In file included from sequence/overlap.cpp:25: sequence/../common/bfcontainer.h: In instantiation of ‘BFContainer::BFIterator BFContainer::BFIterator::operator+(difference_type) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576; difference_type = long int]’: sequence/overlap.cpp:240:43: required from here sequence/../common/bfcontainer.h:182:30: warning: implicitly-declared ‘constexpr BFContainer<{anonymous}::KmerMatch>::BFIterator::BFIterator(const BFContainer<{anonymous}::KmerMatch>::BFIterator&)’ is deprecated [-Wdeprecated-copy] 182 | auto tmp = *this; | ^~~ sequence/../common/bfcontainer.h:141:21: note: because ‘BFContainer<{anonymous}::KmerMatch>::BFIterator’ has user-provided ‘BFContainer::BFIterator& BFContainer::BFIterator::operator=(const BFContainer::BFIterator&) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576]’ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ sequence/../common/bfcontainer.h:183:39: warning: implicitly-declared ‘constexpr BFContainer<{anonymous}::KmerMatch>::BFIterator::BFIterator(const BFContainer<{anonymous}::KmerMatch>::BFIterator&)’ is deprecated [-Wdeprecated-copy] 183 | return tmp += n; | ^ sequence/../common/bfcontainer.h:141:21: note: because ‘BFContainer<{anonymous}::KmerMatch>::BFIterator’ has user-provided ‘BFContainer::BFIterator& BFContainer::BFIterator::operator=(const BFContainer::BFIterator&) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576]’ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ sequence/vertex_index.cpp: In member function ‘void KmerCounter::count(bool)’: sequence/vertex_index.cpp:380:28: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::atomic’ with no trivial copy-assignment; use value-initialization instead [-Wclass-memaccess] 380 | std::memset(_flatCounter, 0, COUNTER_LEN); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo/cuckoohash_map.hh:8, from sequence/vertex_index.h:15, from sequence/vertex_index.cpp:12: /usr/include/c++/13/atomic:753:12: note: ‘struct std::atomic’ declared here 753 | struct atomic : __atomic_base | ^~~~~~~~~~~~~~~~~~~~~ sequence/../common/bfcontainer.h: In instantiation of ‘BFContainer::BFIterator BFContainer::BFIterator::operator-(difference_type) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576; difference_type = long int]’: /usr/include/c++/13/bits/stl_algo.h:1897:71: required from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = BFContainer<{anonymous}::KmerMatch>::BFIterator; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ /usr/include/c++/13/bits/stl_algo.h:1931:38: required from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = BFContainer<{anonymous}::KmerMatch>::BFIterator; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ /usr/include/c++/13/bits/stl_algo.h:1947:25: required from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = BFContainer<{anonymous}::KmerMatch>::BFIterator; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ /usr/include/c++/13/bits/stl_algo.h:4894:18: required from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = BFContainer<{anonymous}::KmerMatch>::BFIterator; _Compare = OverlapDetector::getSeqOverlaps(const FastaRecord&, bool, OvlpDivStats&, int) const::]’ sequence/overlap.cpp:204:11: required from here sequence/../common/bfcontainer.h:193:30: warning: implicitly-declared ‘constexpr BFContainer<{anonymous}::KmerMatch>::BFIterator::BFIterator(const BFContainer<{anonymous}::KmerMatch>::BFIterator&)’ is deprecated [-Wdeprecated-copy] 193 | auto tmp = *this; | ^~~ sequence/../common/bfcontainer.h:141:21: note: because ‘BFContainer<{anonymous}::KmerMatch>::BFIterator’ has user-provided ‘BFContainer::BFIterator& BFContainer::BFIterator::operator=(const BFContainer::BFIterator&) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576]’ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ sequence/../common/bfcontainer.h:194:39: warning: implicitly-declared ‘constexpr BFContainer<{anonymous}::KmerMatch>::BFIterator::BFIterator(const BFContainer<{anonymous}::KmerMatch>::BFIterator&)’ is deprecated [-Wdeprecated-copy] 194 | return tmp -= n; | ^ sequence/../common/bfcontainer.h:141:21: note: because ‘BFContainer<{anonymous}::KmerMatch>::BFIterator’ has user-provided ‘BFContainer::BFIterator& BFContainer::BFIterator::operator=(const BFContainer::BFIterator&) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576]’ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/haplotype_resolver.cpp -o repeat_graph/haplotype_resolver.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/main_repeat.cpp -o repeat_graph/main_repeat.o repeat_graph/main_repeat.cpp:152:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 152 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ repeat_graph/main_repeat.cpp:152:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 152 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/multiplicity_inferer.cpp -o repeat_graph/multiplicity_inferer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/output_generator.cpp -o repeat_graph/output_generator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/read_aligner.cpp -o repeat_graph/read_aligner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/repeat_graph.cpp -o repeat_graph/repeat_graph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/repeat_resolver.cpp -o repeat_graph/repeat_resolver.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG contigger/contig_extender.cpp -o contigger/contig_extender.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG contigger/main_contigger.cpp -o contigger/main_contigger.o contigger/main_contigger.cpp:159:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ contigger/main_contigger.cpp:159:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/alignment.o polishing/alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/bubble_processor.o polishing/bubble_processor.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/dinucleotide_fixer.o polishing/dinucleotide_fixer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/general_polisher.o polishing/general_polisher.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/homo_polisher.o polishing/homo_polisher.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/main_polisher.o polishing/main_polisher.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polishing/subs_matrix.o polishing/subs_matrix.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.3+dfsg2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/libcuckoo -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/interval_tree -I/build/reproducible-path/flye-2.9.3+dfsg2/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG main.cpp -o main.o g++ assemble/chimera.o assemble/extender.o assemble/main_assemble.o assemble/parameters_estimator.o sequence/alignment.o sequence/consensus_generator.o sequence/edlib.o sequence/overlap.o sequence/sequence.o sequence/sequence_container.o sequence/vertex_index.o repeat_graph/graph_processing.o repeat_graph/haplotype_resolver.o repeat_graph/main_repeat.o repeat_graph/multiplicity_inferer.o repeat_graph/output_generator.o repeat_graph/read_aligner.o repeat_graph/repeat_graph.o repeat_graph/repeat_resolver.o contigger/contig_extender.o contigger/main_contigger.o polishing/alignment.o polishing/bubble_processor.o polishing/dinucleotide_fixer.o polishing/general_polisher.o polishing/homo_polisher.o polishing/main_polisher.o polishing/subs_matrix.o main.o -o /build/reproducible-path/flye-2.9.3+dfsg2/bin/flye-modules -Wl,-z,relro -Wl,-z,now -lz -lminimap2 -pthread -std=c++11 -rdynamic make[2]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2/src' make[1]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/flye/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py make[1]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2' make release -C src -j 4 make[2]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2/src' g++ assemble/chimera.o assemble/extender.o assemble/main_assemble.o assemble/parameters_estimator.o sequence/alignment.o sequence/consensus_generator.o sequence/edlib.o sequence/overlap.o sequence/sequence.o sequence/sequence_container.o sequence/vertex_index.o repeat_graph/graph_processing.o repeat_graph/haplotype_resolver.o repeat_graph/main_repeat.o repeat_graph/multiplicity_inferer.o repeat_graph/output_generator.o repeat_graph/read_aligner.o repeat_graph/repeat_graph.o repeat_graph/repeat_resolver.o contigger/contig_extender.o contigger/main_contigger.o polishing/alignment.o polishing/bubble_processor.o polishing/dinucleotide_fixer.o polishing/general_polisher.o polishing/homo_polisher.o polishing/main_polisher.o polishing/subs_matrix.o main.o -o /build/reproducible-path/flye-2.9.3+dfsg2/bin/flye-modules -Wl,-z,relro -Wl,-z,now -lz -lminimap2 -pthread -std=c++11 -rdynamic make[2]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2/src' make[1]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2' running install_lib creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11 creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/short_plasmids/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/__pycache__ creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/trestle/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/__pycache__ creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/__pycache__/test_toy.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/__pycache__ creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/__version__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/repeat_graph/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph/__pycache__ creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/__build__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/utils.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/utils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/configurator.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/config/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/__pycache__ creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/main.py -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye creating /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/__pycache__ copying /build/reproducible-path/flye-2.9.3+dfsg2/.pybuild/cpython3_3.11/build/flye/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/__pycache__ byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/circular_sequences.py to circular_sequences.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/unmapped_reads.py to unmapped_reads.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/short_plasmids/plasmids.py to plasmids.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/divergence.py to divergence.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/graph_resolver.py to graph_resolver.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/trestle.py to trestle.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/trestle_config.py to trestle_config.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/trestle/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/tests/test_toy.py to test_toy.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/__version__.py to __version__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph/graph_alignment.py to graph_alignment.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph/repeat_graph.py to repeat_graph.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/repeat_graph/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/assemble.py to assemble.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/repeat_graph.py to repeat_graph.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/assembly/scaffolder.py to scaffolder.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/__build__.py to __build__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/sam_parser.py to sam_parser.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/bytes2human.py to bytes2human.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/utils/fasta_parser.py to fasta_parser.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/py_cfg.py to py_cfg.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/config/configurator.py to configurator.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/consensus.py to consensus.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/bubbles.py to bubbles.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/alignment.py to alignment.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/polishing/polish.py to polish.cpython-311.pyc byte-compiling /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye/main.py to main.cpython-311.pyc running install_egg_info running egg_info creating flye.egg-info writing flye.egg-info/PKG-INFO writing dependency_links to flye.egg-info/dependency_links.txt writing entry points to flye.egg-info/entry_points.txt writing top-level names to flye.egg-info/top_level.txt writing manifest file 'flye.egg-info/SOURCES.txt' reading manifest file 'flye.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'flye.egg-info/SOURCES.txt' Copying flye.egg-info to /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/lib/python3.11/dist-packages/flye-2.9.3.egg-info Skipping SOURCES.txt running install_scripts Installing flye script to /build/reproducible-path/flye-2.9.3+dfsg2/debian/flye/usr/bin Installing C++ binaries dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/flye-2.9.3+dfsg2' dh_installchangelogs docs/NEWS.md make[1]: Leaving directory '/build/reproducible-path/flye-2.9.3+dfsg2' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/flye/usr/bin/flye dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'flye' in '../flye_2.9.3+dfsg2-1_amd64.deb'. dpkg-deb: building package 'flye-dbgsym' in '../flye-dbgsym_2.9.3+dfsg2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../flye_2.9.3+dfsg2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../flye_2.9.3+dfsg2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3069005 and its subdirectories I: Current time: Fri Jun 13 11:49:50 -12 2025 I: pbuilder-time-stamp: 1749858590 Sat May 11 17:26:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat May 11 17:26:53 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat May 11 17:30:24 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat May 11 17:30:25 UTC 2024 I: flye_2.9.3+dfsg2-1_amd64.changes: Format: 1.8 Date: Fri, 02 Feb 2024 14:50:39 +0100 Source: flye Binary: flye flye-dbgsym Architecture: amd64 Version: 2.9.3+dfsg2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: flye - de novo assembler for single molecule sequencing reads using repe Closes: 1061797 Changes: flye (2.9.3+dfsg2-1) unstable; urgency=medium . [ Étienne Mollier ] * d/salsa-ci.yml: disable i386 build. . [ Andreas Tille ] * Drop code copy of six.py * Port to Python3.12 by removing vendored six.py Closes: #1061797 * Depends: python3-six Checksums-Sha1: 7833ee56542ec2a62de6b7b7c2729459c0b1e3e3 11683092 flye-dbgsym_2.9.3+dfsg2-1_amd64.deb e9d7bace19aef65a1c9d86ba4dd57b66e80c4aa0 6875 flye_2.9.3+dfsg2-1_amd64.buildinfo 6d342dd526cda8213ed43096d27d69dfbfa48d08 23181268 flye_2.9.3+dfsg2-1_amd64.deb Checksums-Sha256: e8ea2813e508f1838dbb6101158139907e79a85ce7cc9cdb17658fb327f230b3 11683092 flye-dbgsym_2.9.3+dfsg2-1_amd64.deb 84c16776a65e3a6b584afa81dfbf681d10a63e279a8869744a8213b1e71f0e0e 6875 flye_2.9.3+dfsg2-1_amd64.buildinfo 106a7d2bae6c46aaf6e91803545007bf1b903023cb33365e6ecf6b92b76e210b 23181268 flye_2.9.3+dfsg2-1_amd64.deb Files: 9d59337d3faf81532a0cf2e3a662e2d3 11683092 debug optional flye-dbgsym_2.9.3+dfsg2-1_amd64.deb 28ae05184268d98c9a78317b7adff6f9 6875 science optional flye_2.9.3+dfsg2-1_amd64.buildinfo 9c49d17f3bbec9401f95bab0c7e76804 23181268 science optional flye_2.9.3+dfsg2-1_amd64.deb Sat May 11 17:30:27 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_32-6433.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/flye_2.9.3+dfsg2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/flye_2.9.3+dfsg2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/flye_2.9.3+dfsg2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/b1/flye_2.9.3+dfsg2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.WVbA7NW2/b2/flye_2.9.3+dfsg2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.754s) 1.754s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.798s) 0.798s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.250s CPU time consumed: 2.034s Sat May 11 17:45:45 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 11 17:45:45 UTC 2024 I: flye from trixie built successfully and reproducibly on amd64. Sat May 11 17:45:47 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 11 17:45:47 UTC 2024 I: Submitting 8.0K b1/flye_2.9.3+dfsg2-1_amd64.buildinfo.asc Sat May 11 17:45:51 UTC 2024 I: Submitting 8.0K b2/flye_2.9.3+dfsg2-1_amd64.buildinfo.asc Sat May 11 17:46:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 11 17:46:05 UTC 2024 I: Done submitting .buildinfo files. Sat May 11 17:46:05 UTC 2024 I: Removing signed flye_2.9.3+dfsg2-1_amd64.buildinfo.asc files: removed './b1/flye_2.9.3+dfsg2-1_amd64.buildinfo.asc' removed './b2/flye_2.9.3+dfsg2-1_amd64.buildinfo.asc'