Tue Apr 30 23:19:32 UTC 2024 I: starting to build filtlong/trixie/amd64 on jenkins on '2024-04-30 23:19' Tue Apr 30 23:19:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/4908/console.log Tue Apr 30 23:19:32 UTC 2024 I: Downloading source for trixie/filtlong=0.2.1-4 --2024-04-30 23:19:33-- http://deb.debian.org/debian/pool/main/f/filtlong/filtlong_0.2.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2183 (2.1K) [text/prs.lines.tag] Saving to: ‘filtlong_0.2.1-4.dsc’ 0K .. 100% 295M=0s 2024-04-30 23:19:33 (295 MB/s) - ‘filtlong_0.2.1-4.dsc’ saved [2183/2183] Tue Apr 30 23:19:33 UTC 2024 I: filtlong_0.2.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: filtlong Binary: filtlong, filtlong-data Architecture: any all Version: 0.2.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rrwick/Filtlong Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/filtlong Vcs-Git: https://salsa.debian.org/med-team/filtlong.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, python3-markdown, python3 Package-List: filtlong deb science optional arch=any filtlong-data deb science optional arch=all Checksums-Sha1: 22c738634d0b1d08d0123ddbe019436fc40486d9 3008548 filtlong_0.2.1.orig.tar.gz 2b707ac8f1bb5eaeef7316a748cd2f1e76cacfed 6876 filtlong_0.2.1-4.debian.tar.xz Checksums-Sha256: e6f47675e87f98cf2481a60bef5cad38396f1e4db653a5c1673139f37770273a 3008548 filtlong_0.2.1.orig.tar.gz e9f0ae075e5b720c275c9f5100078b383572812ab7701c4a9145f3a83cbef9bb 6876 filtlong_0.2.1-4.debian.tar.xz Files: d712423c2331da269bda5c56333f3097 3008548 filtlong_0.2.1.orig.tar.gz b5ab0f227cd06a3a6e34109579786ba7 6876 filtlong_0.2.1-4.debian.tar.xz Dgit: 0ba49305cabbb630cc9e2d281a1f669a6cc72e4f debian archive/debian/0.2.1-4 https://git.dgit.debian.org/filtlong -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTX2PAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo0bg/8DHeIv6Goi2Txf/ele+NKCY960wxf J8nHhaez/TlPFCMuOfZVFR9PSltLV9NTijctgqspE0f3g5TT+2Bd5cw26FP6v88V yUXbv3B2F4XxdO4T4oT+QYJn5jsqfeEaE8cr/AIOgQvy7LdExD4X46lutKeh2Q+b Vor2oudUgGEb/tJZAimTV3hoMa8TsxKyEDjUXCn2+ucFJHbBPzlAsRQasAf4x9th zTPwF56pT2lf8k4m4RuoioutVXeUPDn5r9ppF5j+mbGs972KNzePC/IaoREjjMqz E7kUoh3xkrJfAdb5eOHuVGVR6Lk8KtpCyU63Mk01wSf9VYkzrsLW0SpqYrcFrRAI y1hPfJekDib9FgSuURuY9LhZfTgTEDs5kFZFS08PqzMIBhfIktdbEcol3YKwpqKx Z6A01F7+a6jcNgFkJdNDZCP6GxnwCjoO+L9ItsYzCF0K7Ys8mm25Q6KnActnCMNH H1QETY6C9jEMg0haQ0cFrGkWYra83/46h5v9CWekxrS08NXEY/GrRq1pbnIAr1gs mUmmpyTTtEYVLd8X1dZ6IJllsiu80tByYV1tL467yE19yvHhNDS85NSpClKPDKFe jYicSTYC+6HQjSd0kSq9jDa1CejgHmYrGrwbezAZfeAQvRnpf+QKwaGjsFmz7FS6 /yAKysqth6glnLA= =BxRw -----END PGP SIGNATURE----- Tue Apr 30 23:19:33 UTC 2024 I: Checking whether the package is not for us Tue Apr 30 23:19:33 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Apr 30 23:19:33 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Apr 30 23:21:28 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 2 17:42:36 -12 2025 I: pbuilder-time-stamp: 1748929356 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [filtlong_0.2.1-4.dsc] I: copying [./filtlong_0.2.1.orig.tar.gz] I: copying [./filtlong_0.2.1-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 12 19:09:36 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./filtlong_0.2.1-4.dsc: no acceptable signature found dpkg-source: info: extracting filtlong in filtlong-0.2.1 dpkg-source: info: unpacking filtlong_0.2.1.orig.tar.gz dpkg-source: info: unpacking filtlong_0.2.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_locales_in_test_output.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1778487/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2f568111f1bc401fb776932f2aed67d2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1778487' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/pbuilderrc_8oDJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/b1 --logfile b1/build.log filtlong_0.2.1-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 25 19:07 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1778487/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, python3-markdown, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19901 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After unpacking 74.8 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-markdown but it is not installable Depends: python3 but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libdb5.3 [5.3.28+dfsg2-4+b1 (now)] 2) libssl3 [3.1.5-1 (now)] Install the following packages: 3) libdb5.3t64 [5.3.28+dfsg2-7 (testing)] 4) libexpat1 [2.6.2-1 (testing)] 5) libpython3-stdlib [3.11.8-1 (testing)] 6) libpython3.11-minimal [3.11.9-1 (testing)] 7) libpython3.11-stdlib [3.11.9-1 (testing)] 8) libreadline8t64 [8.2-4 (testing)] 9) libssl3t64 [3.2.1-3 (testing)] 10) media-types [10.1.0 (testing)] 11) netbase [6.4 (testing)] 12) python3 [3.11.8-1 (testing)] 13) python3-markdown [3.6-1 (testing)] 14) python3-minimal [3.11.8-1 (testing)] 15) python3.11 [3.11.9-1 (testing)] 16) python3.11-minimal [3.11.9-1 (testing)] 17) readline-common [8.2-4 (testing)] 18) tzdata [2024a-3 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdb5.3t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-markdown{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages will be REMOVED: libdb5.3{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments python3-yaml wget 0 packages upgraded, 47 newly installed, 2 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After unpacking 100 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-markdown all 3.6-1 [84.0 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 28.8 MB in 4s (8056 kB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libperl5.38:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19894 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19900 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19887 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19902 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20218 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 3 05:43:23 UTC 2025. Universal Time is now: Tue Jun 3 05:43:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-markdown (3.6-1) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/filtlong-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../filtlong_0.2.1-4_source.changes dpkg-buildpackage: info: source package filtlong dpkg-buildpackage: info: source version 0.2.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 distclean make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' rm -f src/kmers.o src/arguments.o src/misc.o src/main.o src/read.o rm -f bin/filtlong make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/filtlong-0.2.1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/kmers.o src/kmers.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/arguments.o src/arguments.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/misc.o src/misc.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/main.o src/main.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/read.o src/read.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o bin/filtlong src/kmers.o src/arguments.o src/misc.o src/main.o src/read.o -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' markdown_py -f README.html README.md make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' python3 -m unittest .................................................................... ---------------------------------------------------------------------- Ran 68 tests in 44.908s OK find test -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'filtlong' in '../filtlong_0.2.1-4_amd64.deb'. dpkg-deb: building package 'filtlong-dbgsym' in '../filtlong-dbgsym_0.2.1-4_amd64.deb'. dpkg-deb: building package 'filtlong-data' in '../filtlong-data_0.2.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../filtlong_0.2.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../filtlong_0.2.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1778487 and its subdirectories I: Current time: Mon Jun 2 17:44:27 -12 2025 I: pbuilder-time-stamp: 1748929467 Tue Apr 30 23:21:29 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Apr 30 23:21:29 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Apr 30 23:26:33 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Apr 30 23:26:34 UTC 2024 I: filtlong_0.2.1-4_amd64.changes: Format: 1.8 Date: Sat, 12 Aug 2023 20:45:37 +0200 Source: filtlong Binary: filtlong filtlong-data filtlong-dbgsym Architecture: all amd64 Version: 0.2.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: filtlong - quality filtering tool for long reads of genome sequences filtlong-data - quality filtering tool for long reads of genome sequences (testda Closes: 1037655 Changes: filtlong (0.2.1-4) unstable; urgency=medium . * Team upload. * gcc-13.patch: new: fix ftbfs with gcc-13. (Closes: #1037655) * hardening.patch: declare forwarding not-needed. * hardening.patch: also propagate preprocessor flags. * d/control: declare compliance to standards version 4.6.2 Checksums-Sha1: 7aa8143458b7fe59443a7a6b441adebd296fd2f1 1913120 filtlong-data_0.2.1-4_all.deb 22b0d62f557f6699a27747f52620484edb673362 819440 filtlong-dbgsym_0.2.1-4_amd64.deb df6ac5269f81d1bc621ffe0ea2376bcab9d28a6e 5947 filtlong_0.2.1-4_amd64.buildinfo 9cceaff2956fcdc3b0a3cc7b0e88988ee055850a 2938728 filtlong_0.2.1-4_amd64.deb Checksums-Sha256: 213667e1c4bc89c0d3b70d500f2bed759b8acb1a90f426cea3495043716ad887 1913120 filtlong-data_0.2.1-4_all.deb 5d63f3a965db065671fda9a71bf4aa244580299078fc3dad22266cc5b9286bc0 819440 filtlong-dbgsym_0.2.1-4_amd64.deb 010cd19eb59cc4873ce9a2dfe024af2fcb53d9f35f8565d105d4dd0b93e19f7c 5947 filtlong_0.2.1-4_amd64.buildinfo 9da4cb7291e2c72d38301b6c9ac3644fac7a242a0b1e681552a62192867429f7 2938728 filtlong_0.2.1-4_amd64.deb Files: a06f03ea076cbafd7ad245a3b2bfc5a0 1913120 science optional filtlong-data_0.2.1-4_all.deb 7b0db6c57882e05e85c5b64093a28a99 819440 debug optional filtlong-dbgsym_0.2.1-4_amd64.deb 422d070fe621d4619fa8621be2647cb7 5947 science optional filtlong_0.2.1-4_amd64.buildinfo d2b9e3a8718720a4f0909f1fd0baddd9 2938728 science optional filtlong_0.2.1-4_amd64.deb Tue Apr 30 23:26:35 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_32-4908.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/filtlong_0.2.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/filtlong_0.2.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/filtlong_0.2.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/b1/filtlong_0.2.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ROpIr0QP/b2/filtlong_0.2.1-4_amd64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 57.568s) 28.926s 1034 calls readelf 25.177s 117 calls diff 2.398s 176 calls objdump 0.647s 20 calls xz 0.341s 2 calls objcopy 0.066s 22 calls strings 0.006s 1 call cmp 0.006s 1 call cmp (external) 0.001s 17 calls cmp (internal) ## compare_files (cumulative) (total time: 160.724s) 31.562s 1 call abc.DotChangesFile 31.519s 2 calls abc.DebFile 31.441s 4 calls abc.XzFile 30.795s 2 calls abc.DebDataTarFile 30.573s 2 calls abc.ElfFile 3.903s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.489s 35 calls diffoscope.comparators.elf.ElfSection 0.333s 3 calls diffoscope.comparators.elf.ElfStringSection 0.069s 2 calls abc.TarFile 0.015s 1 call abc.TextFile 0.013s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.011s 2 calls abc.Md5sumsFile ## container_extract (total time: 0.765s) 0.648s 20 calls diffoscope.comparators.xz.XzContainer 0.065s 24 calls diffoscope.comparators.deb.DebContainer 0.041s 64 calls diffoscope.comparators.deb.DebTarContainer 0.011s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 5.532s) 5.532s 944 calls linediff ## has_same_content_as (total time: 0.009s) 0.006s 3 calls abc.DebFile 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.DebDataTarFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.TarFile 0.000s 35 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.ElfFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 64.370s) 64.369s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 32.375s) 30.303s 1 call html 1.267s 1 call text 0.806s 1 call json ## recognizes (total time: 0.420s) 0.165s 1808 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.117s 900 calls diffoscope.comparators.utils.archive.ArchiveMember 0.092s 12 calls diffoscope.comparators.binary.FilesystemFile 0.047s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.109s) 0.109s 72 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1min 4.696s CPU time consumed: 1min 14.441s Tue Apr 30 23:27:40 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Tue Apr 30 23:27:40 UTC 2024 E: filtlong failed to build reproducibly in trixie on amd64. Tue Apr 30 23:28:15 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 30 23:28:15 UTC 2024 I: Submitting 8.0K b1/filtlong_0.2.1-4_amd64.buildinfo.asc Tue Apr 30 23:28:16 UTC 2024 I: Submitting 8.0K b2/filtlong_0.2.1-4_amd64.buildinfo.asc Tue Apr 30 23:28:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 30 23:28:18 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 30 23:28:18 UTC 2024 I: Removing signed filtlong_0.2.1-4_amd64.buildinfo.asc files: removed './b1/filtlong_0.2.1-4_amd64.buildinfo.asc' removed './b2/filtlong_0.2.1-4_amd64.buildinfo.asc'