Fri Oct 25 00:54:07 UTC 2024 I: starting to build fasttree/trixie/amd64 on jenkins on '2024-10-25 00:53' Fri Oct 25 00:54:07 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/35311/console.log Fri Oct 25 00:54:07 UTC 2024 I: Downloading source for trixie/fasttree=2.1.11-2 --2024-10-25 00:54:07-- http://deb.debian.org/debian/pool/main/f/fasttree/fasttree_2.1.11-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2085 (2.0K) [text/prs.lines.tag] Saving to: ‘fasttree_2.1.11-2.dsc’ 0K .. 100% 232M=0s 2024-10-25 00:54:07 (232 MB/s) - ‘fasttree_2.1.11-2.dsc’ saved [2085/2085] Fri Oct 25 00:54:07 UTC 2024 I: fasttree_2.1.11-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fasttree Binary: fasttree Architecture: any Version: 2.1.11-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Thorsten Alteholz , Andreas Tille , Roland Fehrenbacher Homepage: http://www.microbesonline.org/fasttree/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/fasttree Vcs-Git: https://salsa.debian.org/med-team/fasttree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: fasttree deb science optional arch=any Checksums-Sha1: 2d929e726513c1b450a186b14ddebe0c2af0b960 96068 fasttree_2.1.11.orig.tar.xz 6941e408e19f05453775113821f54735dee3140f 34064 fasttree_2.1.11-2.debian.tar.xz Checksums-Sha256: 7f15713f02afb167f4f33dc067b5b2282b219b22fbaa17eb8f771a7147a05a5c 96068 fasttree_2.1.11.orig.tar.xz c423cfcdfd3f65d160e3c1c397bb7d8eea2c0e17a8892ded3e2c3a0c379560cf 34064 fasttree_2.1.11-2.debian.tar.xz Files: 44830517cc52f2406ba315a14f2ff10d 96068 fasttree_2.1.11.orig.tar.xz 67fc001726234552d41a2ad15b83692d 34064 fasttree_2.1.11-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/bjpQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH69w/+P8bggygsVNHF2RykRMHM8eyrH3D8eZjM BeO2vvriwNddLvspecpfi1OvvXk9U/bz/6k0DDQ2h2gJ0R9zFAg43mNwkc/q6vx4 fK49RVLgPtjwgrvaNBYuGxH0QgbkfYHeRN368uFqLcFZ5FKU4wm65jHu8Eh+JnWW gFe7F5KLOKelhBlO4/NTLIaiA5kOaL7l2xi2G19IHn/9bLzab/xoD/UJYUY39xzT G5ztJx4Cxud8TYK5QYD4Vbcdd3kJJdelS/GE1q3NOIOf9bBGMaN/1mb2mMFg41fT j1QgW/vOX9ccx/xysaSHWE0ZU9aF/zz6ZpGSc+N54y/dTUc7pwoGNCAA8510jw3B f7WhuqBJikHsLA5jXAK7CGbJYT5CVN4KOlJN0pTINPe+V07vgQxsu2YOJP40eTHA aBS7eTPhgZDI9fk+JBe9SnnwH4EMyJZgAQ8M95rq2SH2RXYvux8BcYSL4tOeTmD5 9/tERl/31vSB4hU98hN9VHkrDXhUXsZMEY92UveK44TfradVFLg2gSlQg2nPUHtw 2cahdOPKI8oTZfVmDDUOAbbNYBVH62u2RUsu0FjaCA1EP6mTFKEN8t1ZbfefcOIW Zny0LvVL3uEBVizFhdR1ftnqrU77/FAHt8xJyEmNzq1LdXHBcAdMQ4xOzKutbT8U qy9lckkkXks= =PLs9 -----END PGP SIGNATURE----- Fri Oct 25 00:54:07 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 00:54:07 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Oct 25 00:54:07 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Oct 25 00:54:53 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 26 19:17:09 -12 2025 I: pbuilder-time-stamp: 1764227829 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fasttree_2.1.11-2.dsc] I: copying [./fasttree_2.1.11.orig.tar.xz] I: copying [./fasttree_2.1.11-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 17 17:00:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fasttree_2.1.11-2.dsc: no acceptable signature found dpkg-source: info: extracting fasttree in fasttree-2.1.11 dpkg-source: info: unpacking fasttree_2.1.11.orig.tar.xz dpkg-source: info: unpacking fasttree_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3290391/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1454e65a73e34a00880d03a383026397' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3290391' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/pbuilderrc_JXYP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/b1 --logfile b1/build.log fasttree_2.1.11-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3290391/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19945 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 0s (61.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19945 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes dpkg-buildpackage: info: source package fasttree dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_clean make -j42 distclean make[2]: Entering directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttree make[2]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttreeMP make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttree fasttree.c -lm cc -DOPENMP -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttreeMP fasttree.c -lm fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/fasttree/ dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_installchangelogs changelog make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fasttree' in '../fasttree_2.1.11-2_amd64.deb'. dpkg-deb: building package 'fasttree-dbgsym' in '../fasttree-dbgsym_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fasttree_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../fasttree_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3290391 and its subdirectories I: Current time: Wed Nov 26 19:17:52 -12 2025 I: pbuilder-time-stamp: 1764227872 Fri Oct 25 00:54:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Oct 25 00:54:53 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Oct 25 00:56:15 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Oct 25 00:56:16 UTC 2024 I: fasttree_2.1.11-2_amd64.changes: Format: 1.8 Date: Thu, 17 Dec 2020 17:44:13 +0100 Source: fasttree Binary: fasttree fasttree-dbgsym Architecture: amd64 Version: 2.1.11-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fasttree - phylogenetic trees from alignments of nucleotide or protein seque Changes: fasttree (2.1.11-2) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set field Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: e8273a80ba7ec488633e961530c00f276d1ca2e1 407584 fasttree-dbgsym_2.1.11-2_amd64.deb bb44b6f3ca1d21379cb0bfc32f3b12f3cd5e7c61 4905 fasttree_2.1.11-2_amd64.buildinfo 71d19540ee409e259f37e5b0e3ffe517bebcfbd7 184132 fasttree_2.1.11-2_amd64.deb Checksums-Sha256: 87fca9b6e80d27ff09478e934eb6e2af9f36faa551034bb88e69d1f084141b2c 407584 fasttree-dbgsym_2.1.11-2_amd64.deb 805e1c557980e947a5b3c78637436682559bf4f7eba01e21c21d35fbfbdc3c2f 4905 fasttree_2.1.11-2_amd64.buildinfo 2f248645b763e8a08241be37e8f9ea632812d1a12a6b663df47304dca517c218 184132 fasttree_2.1.11-2_amd64.deb Files: 85e216bf5082acf72b9e5aa54c3ffbdf 407584 debug optional fasttree-dbgsym_2.1.11-2_amd64.deb b3d8909723ce502a24c1229f89f9d11d 4905 science optional fasttree_2.1.11-2_amd64.buildinfo 66d1685e7053d9a0450caa4eb4bac5e1 184132 science optional fasttree_2.1.11-2_amd64.deb Fri Oct 25 00:56:17 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_12-35311.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/fasttree_2.1.11-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/fasttree_2.1.11-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/fasttree_2.1.11-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/b1/fasttree_2.1.11-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.J9p1Vq1Z/b2/fasttree_2.1.11-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.466s) 0.466s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 849ms CPU time consumed: 850ms Fri Oct 25 00:56:18 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 00:56:18 UTC 2024 I: fasttree from trixie built successfully and reproducibly on amd64. Fri Oct 25 00:56:20 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 00:56:20 UTC 2024 I: Submitting 8.0K b1/fasttree_2.1.11-2_amd64.buildinfo.asc Fri Oct 25 00:56:27 UTC 2024 I: Submitting 8.0K b2/fasttree_2.1.11-2_amd64.buildinfo.asc Fri Oct 25 00:56:29 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 00:56:29 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 00:56:29 UTC 2024 I: Removing signed fasttree_2.1.11-2_amd64.buildinfo.asc files: removed './b1/fasttree_2.1.11-2_amd64.buildinfo.asc' removed './b2/fasttree_2.1.11-2_amd64.buildinfo.asc'