Fri May 17 20:31:01 UTC 2024 I: starting to build ecopcr/trixie/amd64 on jenkins on '2024-05-17 20:30' Fri May 17 20:31:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/20967/console.log Fri May 17 20:31:01 UTC 2024 I: Downloading source for trixie/ecopcr=1.0.1+dfsg-4 --2024-05-17 20:31:01-- http://deb.debian.org/debian/pool/main/e/ecopcr/ecopcr_1.0.1%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2035 (2.0K) [text/prs.lines.tag] Saving to: ‘ecopcr_1.0.1+dfsg-4.dsc’ 0K . 100% 214M=0s 2024-05-17 20:31:01 (214 MB/s) - ‘ecopcr_1.0.1+dfsg-4.dsc’ saved [2035/2035] Fri May 17 20:31:01 UTC 2024 I: ecopcr_1.0.1+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ecopcr Binary: ecopcr Architecture: any Version: 1.0.1+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://git.metabarcoding.org/obitools/ecopcr/wikis/home Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ecopcr Vcs-Git: https://salsa.debian.org/med-team/ecopcr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev Package-List: ecopcr deb science optional arch=any Checksums-Sha1: 06d4f44d75e76a0424052456169ca0c8e3e29071 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz c0e63409c3a110f32ceab12c2426622997d018d5 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz Checksums-Sha256: 90e3027e465f1a05a8204b41cff48b5a7fbc00d8e0dce71602698e7abd1baeda 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz e2dcc6c575670c28ccc303d690f6627a34a4e2a76524f53d06fd04613200836b 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz Files: 2d68e793f98edf1055a246278370f1f4 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz 28fd18fc5557a44b2a6eaea676566b10 15984 ecopcr_1.0.1+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmH73mYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG+Gw//T2KrH0xWxN4c7fWXb7CcAjHSfZzE1ipG S3pEm+N337k+X9kbyfg1dv1gbMitdOsxE+MLxvc6UCHqVQkRNAMROm5N7AjWdH9E TGv3Q31YVBTxtZyn6LYZv4dNczEMbx61RDVnklGC/a7Mi+LJKE4LSUV9hL1iUYjv EIS1q0+5X6hWGWpQs6YsKJt8JsY2HiH23vx+93aDgowXpBYaKU+AKuLGMuF0Iqvp JTnGsa5yfCNIPLYj65jb4aBrTi5vxNxubraQRFu/4HQ52YGFx9Ikx52kGMbVSlka HHc7OXWVlwLgVtIYyFyjy98oFwK1BLKzup5dNwopMteFBEjTYvRkboNOQTKUKKJh SwD4QxsdAXfJ0HS3W2UTUHZRJ59o3tag66XJ+nkPiLki0nt3Eij7ickk5S+csNOZ nXI4lqyzCfn6aackrUiHOOoggCecphHafScqi4GsSNPfzO/DSN0QKnDmYJDe25cf GB1ANyTYl3FrbVkAwlYUTe4W2oc2gc8V8QxQ95rBJkLVLBKwnP3YOGVJlcoJBeIC u5hW9U/4lvctVabKhaAA5FhlLCqWFK1hn79+/73Ty4csPDFyCoC+OszrtHUUFR6f T5ZB6O/ZeMD72yARwEZ05k+U7tKeJ73PZLB5zPYr61qbpfiX5KZmTPqE5KxBRlbW yu5SJuKPxlQ= =W8/X -----END PGP SIGNATURE----- Fri May 17 20:31:01 UTC 2024 I: Checking whether the package is not for us Fri May 17 20:31:01 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri May 17 20:31:01 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri May 17 20:31:49 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 19 14:54:05 -12 2025 I: pbuilder-time-stamp: 1750388045 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ecopcr_1.0.1+dfsg-4.dsc] I: copying [./ecopcr_1.0.1+dfsg.orig.tar.xz] I: copying [./ecopcr_1.0.1+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 3 13:53:42 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ecopcr_1.0.1+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting ecopcr in ecopcr-1.0.1+dfsg dpkg-source: info: unpacking ecopcr_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking ecopcr_1.0.1+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying ecoisundertaxon.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1668891/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5e1ed96eb6594ec1aebc62a1dedc6a8e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1668891' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/pbuilderrc_bzrF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/b1 --logfile b1/build.log ecopcr_1.0.1+dfsg-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 17 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1668891/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 26.8 MB of archives. After unpacking 104 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 26.8 MB in 1s (21.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20015 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 20 02:54:33 UTC 2025. Universal Time is now: Fri Jun 20 02:54:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ecopcr-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ecopcr_1.0.1+dfsg-4_source.changes dpkg-buildpackage: info: source package ecopcr dpkg-buildpackage: info: source version 1.0.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_auto_clean cd src && make -j42 clean make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' rm -f *.o rm -f ecoPCR ecofind ecogrep ecoisundertaxon make -C libapat clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' rm -rf apat_parse.o apat_search.o libstki.o libapat.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' make -C libecoPCR clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' rm -rf ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o libecoPCR.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' make -C libthermo clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' rm -rf nnparams.o libthermo.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' find . -type f -name "*.P" -delete make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src --with python3 dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecopcr.o ecopcr.c make -C libapat make -C libecoPCR make -C libthermo gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofind.o ecofind.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecogrep.o ecogrep.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoisundertaxon.o ecoisundertaxon.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nnparams.o nnparams.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_parse.o apat_parse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_search.o apat_search.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o libstki.o libstki.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoapat.o ecoapat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecodna.o ecodna.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoError.o ecoError.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoIOUtils.o ecoIOUtils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoMalloc.o ecoMalloc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecorank.o ecorank.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoseq.o ecoseq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecotax.o ecotax.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofilter.o ecofilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o econame.o econame.c ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o ranlib libecoPCR.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' ar -cr libapat.a apat_parse.o apat_search.o libstki.o ranlib libapat.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' ar -cr libthermo.a nnparams.o ranlib libthermo.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' gcc -Wl,-z,relro -Wl,-z,now -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecogrep ecogrep.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecoisundertaxon ecoisundertaxon.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/ecopcr/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_install for tool in tools/* ; do \ cp -a ${tool} debian/ecopcr/usr/bin/`basename ${tool} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_python3 -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'ecopcr' in '../ecopcr_1.0.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'ecopcr-dbgsym' in '../ecopcr-dbgsym_1.0.1+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ecopcr_1.0.1+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../ecopcr_1.0.1+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1668891 and its subdirectories I: Current time: Thu Jun 19 14:54:48 -12 2025 I: pbuilder-time-stamp: 1750388088 Fri May 17 20:31:50 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri May 17 20:31:50 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri May 17 20:34:58 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri May 17 20:34:59 UTC 2024 I: ecopcr_1.0.1+dfsg-4_amd64.changes: Format: 1.8 Date: Thu, 03 Feb 2022 14:50:37 +0100 Source: ecopcr Binary: ecopcr ecopcr-dbgsym Architecture: amd64 Version: 1.0.1+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ecopcr - estimate PCR barcode primers quality Changes: ecopcr (1.0.1+dfsg-4) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: ccede8a22aee7b3fe8b0acd13f391bfaf8a63db7 144160 ecopcr-dbgsym_1.0.1+dfsg-4_amd64.deb d064bbb37dad9f9c19b293b37d4d2d567146b1f9 5762 ecopcr_1.0.1+dfsg-4_amd64.buildinfo ddc7dad8c550e10adf205d049345bc537381ec7c 58576 ecopcr_1.0.1+dfsg-4_amd64.deb Checksums-Sha256: 6e69c13e21691416f2561cd679ff015436e91625b5ca27734aab0d6f959dbf23 144160 ecopcr-dbgsym_1.0.1+dfsg-4_amd64.deb 7d3fc2110579e2fc8b9de5add6e298e6cc351e6ebf1bd07ff6a3d8aa1871f400 5762 ecopcr_1.0.1+dfsg-4_amd64.buildinfo 55539739beaf1c96179423735d0c839acb99df6000210c84917715145ff4c260 58576 ecopcr_1.0.1+dfsg-4_amd64.deb Files: 3b23bcebdfa1e71e327004136165fdfa 144160 debug optional ecopcr-dbgsym_1.0.1+dfsg-4_amd64.deb 489d303d5d8d11658799d2846f000972 5762 science optional ecopcr_1.0.1+dfsg-4_amd64.buildinfo 0b3d5d4590995c0202f2b85b56c4b8ff 58576 science optional ecopcr_1.0.1+dfsg-4_amd64.deb Fri May 17 20:35:00 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_4-20967.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/ecopcr_1.0.1+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/ecopcr_1.0.1+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/ecopcr_1.0.1+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/b1/ecopcr_1.0.1+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wGDRrG0a/b2/ecopcr_1.0.1+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.405s) 0.405s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 764ms CPU time consumed: 764ms Fri May 17 20:35:05 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 17 20:35:05 UTC 2024 I: ecopcr from trixie built successfully and reproducibly on amd64. Fri May 17 20:35:07 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 17 20:35:07 UTC 2024 I: Submitting 8.0K b1/ecopcr_1.0.1+dfsg-4_amd64.buildinfo.asc Fri May 17 20:35:08 UTC 2024 I: Submitting 8.0K b2/ecopcr_1.0.1+dfsg-4_amd64.buildinfo.asc Fri May 17 20:35:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 17 20:35:11 UTC 2024 I: Done submitting .buildinfo files. Fri May 17 20:35:11 UTC 2024 I: Removing signed ecopcr_1.0.1+dfsg-4_amd64.buildinfo.asc files: removed './b1/ecopcr_1.0.1+dfsg-4_amd64.buildinfo.asc' removed './b2/ecopcr_1.0.1+dfsg-4_amd64.buildinfo.asc'