Wed Nov 6 22:47:33 UTC 2024 I: starting to build dipy/trixie/amd64 on jenkins on '2024-11-06 22:47' Wed Nov 6 22:47:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/22452/console.log Wed Nov 6 22:47:33 UTC 2024 I: Downloading source for trixie/dipy=1.9.0-8 --2024-11-06 22:47:33-- http://deb.debian.org/debian/pool/main/d/dipy/dipy_1.9.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3023 (3.0K) [text/prs.lines.tag] Saving to: ‘dipy_1.9.0-8.dsc’ 0K .. 100% 266M=0s 2024-11-06 22:47:33 (266 MB/s) - ‘dipy_1.9.0-8.dsc’ saved [3023/3023] Wed Nov 6 22:47:33 UTC 2024 I: dipy_1.9.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dipy Binary: python3-dipy, python3-dipy-lib, python-dipy-doc Architecture: any all Version: 1.9.0-8 Maintainer: Debian Med Packaging Team Uploaders: Yaroslav Halchenko , Michael Hanke , Étienne Mollier Homepage: https://dipy.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dipy Vcs-Git: https://salsa.debian.org/med-team/dipy.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-matplotlib, python3-nibabel, python3-pandas, python3-pytest, python3-sklearn, python3-tables, python3-vtk9, xauth, xvfb Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev:native, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py , python3-matplotlib , python3-nibabel , python3-pil.imagetk , python3-pytest , python3-pandas [!mips64el] , python3-tables [!s390x] , python3-tk , python3-trx-python , python3-sklearn , python3-tqdm , xvfb , xauth Build-Depends-Indep: python3-sphinx , python3-numpydoc , python3-skimage , python3-sphinx-design , python3-doc Package-List: python-dipy-doc deb doc optional arch=all python3-dipy deb python optional arch=all python3-dipy-lib deb python optional arch=any Checksums-Sha1: 10a246b509c519655a8af8df949fa05d60af458d 6516685 dipy_1.9.0.orig.tar.gz 3b087757c2b746a43a26f9423a2f9456df05c1c6 24260 dipy_1.9.0-8.debian.tar.xz Checksums-Sha256: 2760c3d1456dd3620c88836b2aa7d576e73bea10a28ccd795f1582bfaefb4ff1 6516685 dipy_1.9.0.orig.tar.gz 3b9c0b4e6cbfceb2825c56723da83f9f091123a44a21805fee51a2090d9673d4 24260 dipy_1.9.0-8.debian.tar.xz Files: 7df1186f94264d6e658c4b0116754c50 6516685 dipy_1.9.0.orig.tar.gz 056f6702b7a1bc9cd1a37c9fb0cfaf3e 24260 dipy_1.9.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbyu8wACgkQPCZ2P2xn 5uLqQQ//afcb0L2KbL07Gja2dNhQzxvG+ql8prpirg8yghegAk3oCmg1O0h2Pioa K7/ShzcsoExHZVB8IcScR+Qm6IWqRy+O2RUjQn7mncNfUTrKtqS5VoKdlnGVCJva y4Yw5jcaFfM2rnHIQKUcF073CtnTLwWkcOmED815hLN80c9QEaK6t7FtBdwaWihZ wvpTcP8J4Dg15PYSE+W/95rSbQbMcNnmxqRw/HMhlXx28IF3b4rz0Rrl7GS8Sqt+ hsYUjY5+2jmMjXakvvZ/YU4Cso57lx+ljEj3g75SMBPkT/sIaPfuZaGMaVaAm9qD nPO4GZEblM5BH5SP6PL6Grntp7Eojl3JkgtobUKT1+XMqV3wUxR7yQ2dnJjVcCLk EitNC2fjDYmCm++aUJ/YD1fDZbQT4YdQxEkaG2QrqUgzW3Ijh2j0VZzLjdg7JUgT UstMBMaMLE/ABykDcBzT/hdIgurzblAE5zxxtfljLJ+J+HU7XDLESucO6RW5/9ye 135Poi4FvFit/JuPmJrWZ/p81c+tQMDAXTcxWg3cpp8Bwnma4QHI7htNRVrtrZAh l14631B1BURxxKIJru15zMvZQL5znjxzbk2yIRVGDIwJM+H8xZJX6FwRFZFSQjjj 6uaIxgvvbT2vGJxlKkMwwXTypx8RIhG1zLJnEx9la/Q03xcpQJw= =fJyE -----END PGP SIGNATURE----- Wed Nov 6 22:47:33 UTC 2024 I: Checking whether the package is not for us Wed Nov 6 22:47:33 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Nov 6 22:47:33 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu Nov 7 00:46:10 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 6 10:47:36 -12 2024 I: pbuilder-time-stamp: 1730933256 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dipy_1.9.0-8.dsc] I: copying [./dipy_1.9.0.orig.tar.gz] I: copying [./dipy_1.9.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 24 13:17:00 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dipy_1.9.0-8.dsc: no acceptable signature found dpkg-source: info: extracting dipy in dipy-1.9.0 dpkg-source: info: unpacking dipy_1.9.0.orig.tar.gz dpkg-source: info: unpacking dipy_1.9.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_no_sources_for_docs dpkg-source: info: applying skip-tests-needing-internet.patch dpkg-source: info: applying fix-i386.patch dpkg-source: info: applying skip_wall-clock_test.patch dpkg-source: info: applying no-network.patch dpkg-source: info: applying relay_comparison.patch dpkg-source: info: applying sphinx-default.patch dpkg-source: info: applying fix-privacy-breaches.patch dpkg-source: info: applying pytest-8.patch dpkg-source: info: applying 0011-Python-3.13-Fix-tests-for-next-Python-release-3210.patch dpkg-source: info: applying 0012-bf-fix-big-endian-compatibility.patch dpkg-source: info: applying improve-fibonacci_sphere-reliability dpkg-source: info: applying syntax_warnings.patch dpkg-source: info: applying python3 dpkg-source: info: applying tests_ignore_duration I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1519285/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1cf976603bd74762afcde3114b37ffe2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1519285' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/pbuilderrc_xA2L --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/b1 --logfile b1/build.log dipy_1.9.0-8.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1519285/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev:native, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py, python3-matplotlib, python3-nibabel, python3-pil.imagetk, python3-pytest, python3-pandas, python3-tables, python3-tk, python3-trx-python, python3-sklearn, python3-tqdm, xvfb, xauth, python3-sphinx, python3-numpydoc, python3-skimage, python3-sphinx-design, python3-doc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-mesonpy; however: Package python3-mesonpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nibabel; however: Package python3-nibabel is not installed. pbuilder-satisfydepends-dummy depends on python3-pil.imagetk; however: Package python3-pil.imagetk is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-tables; however: Package python3-tables is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-trx-python; however: Package python3-trx-python is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on xauth; however: Package xauth is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-skimage; however: Package python3-skimage is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-design; however: Package python3-sphinx-design is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libblosc1{a} libblosc2-4{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblzf1{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libopenjp2-7{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1t64{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunwind8{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} meson{a} netbase{a} ninja-build{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tables-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-deepdiff{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imageio{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-joblib{a} python3-jsonpickle{a} python3-kiwisolver{a} python3-lazy-loader{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-mesonpy{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-nibabel{a} python3-numexpr{a} python3-numpy{a} python3-numpydoc{a} python3-ordered-set{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-skimage{a} python3-skimage-lib{a} python3-sklearn{a} python3-sklearn-lib{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-design{a} python3-sympy{a} python3-tables{a} python3-tables-lib{a} python3-tabulate{a} python3-threadpoolctl{a} python3-tifffile{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-trx-python{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-doc{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} x11-xkb-utils{a} xauth{a} xkb-data{a} xml-core{a} xserver-common{a} xvfb{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers patchelf psmisc publicsuffix python3-bottleneck python3-bs4 python3-clevercsv python3-cssselect python3-dask python3-dipy python3-fuse python3-gdal python3-html5lib python3-odf python3-olefile python3-openpyxl python3-psutil python3-pydicom python3-pydot python3-pygraphviz python3-simplejson python3-yaml shared-mime-info wget xdg-user-dirs xfonts-base 0 packages upgraded, 293 newly installed, 0 to remove and 0 not upgraded. Need to get 242 MB of archives. After unpacking 1020 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b2 [804 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 71 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libblosc2-4 amd64 2.15.1+ds-1 [192 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.3-2 [157 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.2.4-1 [37.9 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b3 [7772 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.2-2 [26.0 MB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b2 [232 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get: 131 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.2.4-1 [9182 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.2.4-1 [42.7 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b2 [20.3 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.2.4-1 [43.8 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.2.4-1 [154 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 148 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b2 [178 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b2 [10.1 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.6-1 [2147 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.6-1 [5127 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 173 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libunwind8 amd64 1.6.2-3.1 [51.5 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1+b3 [200 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libxfont2 amd64 1:2.0.6-1+b2 [132 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libxkbfile1 amd64 1:1.1.0-1+b2 [76.5 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1+b1 [36.3 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 meson all 1.6.0-1 [628 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 python-tables-data all 3.10.1-1 [49.5 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 207 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.6-1 [506 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b5 [318 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.0-2 [215 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 222 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 python3-jsonpickle all 3.3.0+dfsg-1 [44.1 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get: 226 http://deb.debian.org/debian trixie/main amd64 python3-deepdiff all 6.7.1-2 [65.6 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 python3.12-doc all 3.12.6-1 [13.1 MB] Get: 229 http://deb.debian.org/debian trixie/main amd64 python3-doc all 3.12.6-1 [9884 B] Get: 230 http://deb.debian.org/debian trixie/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.0-1 [1251 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b4 [25.2 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get: 237 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.54.1-4 [1429 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 python3.12-tk amd64 3.12.6-1 [112 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.0-1 [103 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.6-1 [9428 B] Get: 248 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.4.0-1 [79.4 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 python3-imageio all 2.36.0-1 [229 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 252 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 253 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 python3-joblib all 1.3.2-4 [216 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-2 [60.9 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 python3-lazy-loader all 0.4-1 [13.5 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.8.3-3 [5560 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-metadata all 0.9.0~rc1-1 [20.9 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 python3-mesonpy all 0.17.1-1 [108 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 263 http://deb.debian.org/debian trixie/main amd64 python3-nibabel all 5.2.1-2 [2659 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 python3-numexpr amd64 2.10.1-2+b1 [125 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 python3-numpydoc all 1.6.0-2 [49.6 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [4389 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 python3-skimage-lib amd64 0.24.0-5 [2499 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 python3-tifffile all 20240920-1 [186 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 python3-skimage all 0.24.0-5 [20.6 MB] Get: 281 http://deb.debian.org/debian trixie/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3657 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-design all 0.6.1-1 [883 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 python3-tables-lib amd64 3.10.1-1 [512 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 python3-tables all 3.10.1-1 [355 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 python3-tqdm all 4.66.5-1 [90.1 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 python3-trx-python all 0.3-1 [40.2 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 x11-xkb-utils amd64 7.7+9 [159 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 xserver-common all 2:21.1.14-1 [2397 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 xvfb amd64 2:21.1.14-1 [3177 kB] Fetched 242 MB in 5s (48.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-2) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21364 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../021-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../022-libbrotli1_1.1.0-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b5) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../023-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../024-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../025-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../026-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../027-fontconfig-config_2.15.0-1.1+b1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../028-libfontconfig1_2.15.0-1.1+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../029-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3+b2_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b2) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../031-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../033-libx11-6_2%3a1.8.7-1+b2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1+b2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../035-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../036-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../037-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../038-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../039-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../040-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. Preparing to unpack .../041-blt_2.5.3+dfsg-7_amd64.deb ... Unpacking blt (2.5.3+dfsg-7) ... Selecting previously unselected package cython3. Preparing to unpack .../042-cython3_3.0.11+dfsg-1_amd64.deb ... Unpacking cython3 (3.0.11+dfsg-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../043-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../044-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../045-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../046-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../047-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../048-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../049-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../050-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../051-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../052-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../053-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../054-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../055-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../056-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../057-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../058-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../059-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../060-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../061-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../062-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../063-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../064-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../065-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../066-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../067-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package xml-core. Preparing to unpack .../068-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../069-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../070-fonts-lyx_2.4.2.1-1_all.deb ... Unpacking fonts-lyx (2.4.2.1-1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../071-libaec0_1.1.3-1+b1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../072-libblas3_3.12.0-3+b1_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3+b1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../073-libsnappy1v5_1.2.1-1+b1_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.2.1-1+b1) ... Selecting previously unselected package libblosc1:amd64. Preparing to unpack .../074-libblosc1_1.21.5+ds-1+b2_amd64.deb ... Unpacking libblosc1:amd64 (1.21.5+ds-1+b2) ... Selecting previously unselected package libblosc2-4:amd64. Preparing to unpack .../075-libblosc2-4_2.15.1+ds-1_amd64.deb ... Unpacking libblosc2-4:amd64 (2.15.1+ds-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../076-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../077-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../078-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../079-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../080-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../081-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../082-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../083-libcurl4t64_8.10.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.10.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../084-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../085-libdrm-common_2.4.123-1_all.deb ... Unpacking libdrm-common (2.4.123-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../086-libdrm2_2.4.123-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../087-libdrm-amdgpu1_2.4.123-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../088-libpciaccess0_0.17-3+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3+b2) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../089-libdrm-intel1_2.4.123-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../090-libdrm-radeon1_2.4.123-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../091-libedit2_3.1-20240808-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20240808-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../092-libexpat1-dev_2.6.3-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.6.3-2) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../093-libfontenc1_1%3a1.1.8-1+b1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../094-libfribidi0_1.0.15-1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.15-1) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../095-libwayland-server0_1.23.0-1+b1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.23.0-1+b1) ... Selecting previously unselected package libxcb-randr0:amd64. Preparing to unpack .../096-libxcb-randr0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-randr0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../097-libglapi-mesa_24.2.4-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (24.2.4-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../098-libz3-4_4.8.12-3.1+b3_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b3) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../099-libllvm19_1%3a19.1.2-2_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.2-2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../100-libsensors-config_1%3a3.6.0-10_all.deb ... Unpacking libsensors-config (1:3.6.0-10) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../101-libsensors5_1%3a3.6.0-10+b1_amd64.deb ... Unpacking libsensors5:amd64 (1:3.6.0-10+b1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../102-libx11-xcb1_2%3a1.8.7-1+b2_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.8.7-1+b2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../103-libxcb-dri2-0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../104-libxcb-dri3-0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../105-libxcb-present0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../106-libxcb-sync1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../107-libxcb-xfixes0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../108-libxshmfence1_1.3-1+b2_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1+b2) ... Selecting previously unselected package mesa-libgallium:amd64. Preparing to unpack .../109-mesa-libgallium_24.2.4-1_amd64.deb ... Unpacking mesa-libgallium:amd64 (24.2.4-1) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../110-libgbm1_24.2.4-1_amd64.deb ... Unpacking libgbm1:amd64 (24.2.4-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../111-libgfortran5_14.2.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-6) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../112-libglvnd0_1.7.0-1+b2_amd64.deb ... Unpacking libglvnd0:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../113-libxcb-glx0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../114-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../115-libxfixes3_1%3a6.0.0-2+b2_amd64.deb ... Unpacking libxfixes3:amd64 (1:6.0.0-2+b2) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../116-libxxf86vm1_1%3a1.1.4-1+b3_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Selecting previously unselected package libvulkan1:amd64. Preparing to unpack .../117-libvulkan1_1.3.296.0-1_amd64.deb ... Unpacking libvulkan1:amd64 (1.3.296.0-1) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../118-libgl1-mesa-dri_24.2.4-1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (24.2.4-1) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../119-libglx-mesa0_24.2.4-1_amd64.deb ... Unpacking libglx-mesa0:amd64 (24.2.4-1) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../120-libglx0_1.7.0-1+b2_amd64.deb ... Unpacking libglx0:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../121-libgl1_1.7.0-1+b2_amd64.deb ... Unpacking libgl1:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../122-libglib2.0-0t64_2.82.2-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-2) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../123-libgraphite2-3_1.3.14-2+b1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../124-libharfbuzz0b_10.0.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../125-libsz2_1.1.3-1+b1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-103-1t64:amd64. Preparing to unpack .../126-libhdf5-103-1t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Selecting previously unselected package libhdf5-hl-100t64:amd64. Preparing to unpack .../127-libhdf5-hl-100t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../128-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../129-libimagequant0_2.18.0-1+b2_amd64.deb ... Unpacking libimagequant0:amd64 (2.18.0-1+b2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../130-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../131-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../132-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../133-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../134-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../135-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../136-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../137-liblapack3_3.12.0-3+b1_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3+b1) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../138-liblbfgsb0_3.0+dfsg.4-1+b2_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../139-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../140-liblerc4_4.0.0+ds-4+b2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-4+b2) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../141-liblzf1_3.6-4+b2_amd64.deb ... Unpacking liblzf1:amd64 (3.6-4+b2) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../142-liblzo2-2_2.10-3+b1_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-3+b1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../143-libopenjp2-7_2.5.0-2+b4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+b4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../144-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../145-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package libpython3.12t64:amd64. Preparing to unpack .../146-libpython3.12t64_3.12.6-1_amd64.deb ... Unpacking libpython3.12t64:amd64 (3.12.6-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../147-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.12-dev:amd64. Preparing to unpack .../148-libpython3.12-dev_3.12.6-1_amd64.deb ... Unpacking libpython3.12-dev:amd64 (3.12.6-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../149-libpython3-dev_3.12.6-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.12.6-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../150-libpython3-all-dev_3.12.6-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.12.6-1) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../151-libqhull-r8.0_2020.2-6+b2_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-6+b2) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../152-libraqm0_0.10.1-1+b2_amd64.deb ... Unpacking libraqm0:amd64 (0.10.1-1+b2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../153-libsharpyuv0_1.4.0-0.1+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../154-libsm6_2%3a1.2.4-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.4-1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../155-libwebp7_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../156-libtiff6_4.5.1+git230720-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-5) ... Selecting previously unselected package libunwind8:amd64. Preparing to unpack .../157-libunwind8_1.6.2-3.1_amd64.deb ... Unpacking libunwind8:amd64 (1.6.2-3.1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../158-libwebpdemux2_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../159-libwebpmux3_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../160-libxt6t64_1%3a1.2.1-1.2+b1_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../161-libxmu6_2%3a1.1.3-3+b3_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3+b3) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../162-libxpm4_1%3a3.5.17-1+b2_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.17-1+b2) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../163-libxaw7_2%3a1.0.14-1+b3_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.14-1+b3) ... Selecting previously unselected package libxfont2:amd64. Preparing to unpack .../164-libxfont2_1%3a2.0.6-1+b2_amd64.deb ... Unpacking libxfont2:amd64 (1:2.0.6-1+b2) ... Selecting previously unselected package libxkbfile1:amd64. Preparing to unpack .../165-libxkbfile1_1%3a1.1.0-1+b2_amd64.deb ... Unpacking libxkbfile1:amd64 (1:1.1.0-1+b2) ... Selecting previously unselected package libxmuu1:amd64. Preparing to unpack .../166-libxmuu1_2%3a1.1.3-3+b3_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.3-3+b3) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../167-libxrandr2_2%3a1.5.4-1+b1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.4-1+b1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../168-libxslt1.1_1.1.35-1.1+b1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.1+b1) ... Selecting previously unselected package ninja-build. Preparing to unpack .../169-ninja-build_1.12.1-1_amd64.deb ... Unpacking ninja-build (1.12.1-1) ... Selecting previously unselected package meson. Preparing to unpack .../170-meson_1.6.0-1_all.deb ... Unpacking meson (1.6.0-1) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../171-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../172-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../173-python3-packaging_24.1-1_all.deb ... Unpacking python3-packaging (24.1-1) ... Selecting previously unselected package python3-pyproject-hooks. Preparing to unpack .../174-python3-pyproject-hooks_1.2.0-1_all.deb ... Unpacking python3-pyproject-hooks (1.2.0-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../175-python3-toml_0.10.2-1_all.deb ... Unpacking python3-toml (0.10.2-1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../176-python3-wheel_0.44.0-2_all.deb ... Unpacking python3-wheel (0.44.0-2) ... Selecting previously unselected package python3-build. Preparing to unpack .../177-python3-build_1.2.2-1_all.deb ... Unpacking python3-build (1.2.2-1) ... Selecting previously unselected package python3-installer. Preparing to unpack .../178-python3-installer_0.7.0+dfsg1-3_all.deb ... Unpacking python3-installer (0.7.0+dfsg1-3) ... Selecting previously unselected package pybuild-plugin-pyproject. Preparing to unpack .../179-pybuild-plugin-pyproject_6.20241024_all.deb ... Unpacking pybuild-plugin-pyproject (6.20241024) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../180-python-babel-localedata_2.14.0-1_all.deb ... Unpacking python-babel-localedata (2.14.0-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../181-python-matplotlib-data_3.8.3-3_all.deb ... Unpacking python-matplotlib-data (3.8.3-3) ... Selecting previously unselected package python-tables-data. Preparing to unpack .../182-python-tables-data_3.10.1-1_all.deb ... Unpacking python-tables-data (3.10.1-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../183-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-all. Preparing to unpack .../184-python3-all_3.12.6-1_amd64.deb ... Unpacking python3-all (3.12.6-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../185-python3.12-dev_3.12.6-1_amd64.deb ... Unpacking python3.12-dev (3.12.6-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../186-python3-dev_3.12.6-1_amd64.deb ... Unpacking python3-dev (3.12.6-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../187-python3-all-dev_3.12.6-1_amd64.deb ... Unpacking python3-all-dev (3.12.6-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../188-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-attr. Preparing to unpack .../189-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../190-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-babel. Preparing to unpack .../191-python3-babel_2.14.0-1_all.deb ... Unpacking python3-babel (2.14.0-1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../192-python3-brotli_1.1.0-2+b5_amd64.deb ... Unpacking python3-brotli (1.1.0-2+b5) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../193-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../194-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../195-python3-charset-normalizer_3.4.0-1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.0-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../196-python3-numpy_1%3a1.26.4+ds-11_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-11) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../197-python3-contourpy_1.3.0-2_amd64.deb ... Unpacking python3-contourpy (1.3.0-2) ... Selecting previously unselected package python3-cpuinfo. Preparing to unpack .../198-python3-cpuinfo_9.0.0+git20221119-2_all.deb ... Unpacking python3-cpuinfo (9.0.0+git20221119-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../199-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../200-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../201-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-jsonpickle. Preparing to unpack .../202-python3-jsonpickle_3.3.0+dfsg-1_all.deb ... Unpacking python3-jsonpickle (3.3.0+dfsg-1) ... Selecting previously unselected package python3-ordered-set. Preparing to unpack .../203-python3-ordered-set_4.1.0-1_all.deb ... Unpacking python3-ordered-set (4.1.0-1) ... Selecting previously unselected package python3-deepdiff. Preparing to unpack .../204-python3-deepdiff_6.7.1-2_all.deb ... Unpacking python3-deepdiff (6.7.1-2) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../205-python3-defusedxml_0.7.1-2_all.deb ... Unpacking python3-defusedxml (0.7.1-2) ... Selecting previously unselected package python3.12-doc. Preparing to unpack .../206-python3.12-doc_3.12.6-1_all.deb ... Unpacking python3.12-doc (3.12.6-1) ... Selecting previously unselected package python3-doc. Preparing to unpack .../207-python3-doc_3.12.6-1_all.deb ... Unpacking python3-doc (3.12.6-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../208-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../209-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../210-python3-six_1.16.0-7_all.deb ... Unpacking python3-six (1.16.0-7) ... Selecting previously unselected package python3-fs. Preparing to unpack .../211-python3-fs_2.4.16-4_all.deb ... Unpacking python3-fs (2.4.16-4) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../212-python3-lxml_5.3.0-1_amd64.deb ... Unpacking python3-lxml:amd64 (5.3.0-1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../213-python3-lz4_4.0.2+dfsg-1+b4_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b4) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../214-python3-scipy_1.13.1-5_amd64.deb ... Unpacking python3-scipy (1.13.1-5) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../215-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../216-python3-sympy_1.13.3-1_all.deb ... Unpacking python3-sympy (1.13.3-1) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../217-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../218-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../219-python3-fonttools_4.54.1-4_amd64.deb ... Unpacking python3-fonttools (4.54.1-4) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../220-python3-h5py-serial_3.11.0-5_amd64.deb ... Unpacking python3-h5py-serial (3.11.0-5) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../221-python3-h5py_3.11.0-5_all.deb ... Unpacking python3-h5py (3.11.0-5) ... Selecting previously unselected package python3-idna. Preparing to unpack .../222-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3.12-tk. Preparing to unpack .../223-python3.12-tk_3.12.6-1_amd64.deb ... Unpacking python3.12-tk (3.12.6-1) ... Selecting previously unselected package python3.13-tk. Preparing to unpack .../224-python3.13-tk_3.13.0-1_amd64.deb ... Unpacking python3.13-tk (3.13.0-1) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../225-python3-tk_3.12.6-1_amd64.deb ... Unpacking python3-tk:amd64 (3.12.6-1) ... Selecting previously unselected package python3-pil.imagetk:amd64. Preparing to unpack .../226-python3-pil.imagetk_10.4.0-1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (10.4.0-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../227-python3-pil_10.4.0-1_amd64.deb ... Unpacking python3-pil:amd64 (10.4.0-1) ... Selecting previously unselected package python3-imageio. Preparing to unpack .../228-python3-imageio_2.36.0-1_all.deb ... Unpacking python3-imageio (2.36.0-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../229-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../230-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../231-python3-markupsafe_2.1.5-1+b1_amd64.deb ... Unpacking python3-markupsafe (2.1.5-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../232-python3-jinja2_3.1.3-1_all.deb ... Unpacking python3-jinja2 (3.1.3-1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../233-python3-joblib_1.3.2-4_all.deb ... Unpacking python3-joblib (1.3.2-4) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../234-python3-kiwisolver_1.4.7-2_amd64.deb ... Unpacking python3-kiwisolver (1.4.7-2) ... Selecting previously unselected package python3-lazy-loader. Preparing to unpack .../235-python3-lazy-loader_0.4-1_all.deb ... Unpacking python3-lazy-loader (0.4-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../236-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../237-python3-matplotlib_3.8.3-3_amd64.deb ... Unpacking python3-matplotlib (3.8.3-3) ... Selecting previously unselected package python3-pyproject-metadata. Preparing to unpack .../238-python3-pyproject-metadata_0.9.0~rc1-1_all.deb ... Unpacking python3-pyproject-metadata (0.9.0~rc1-1) ... Selecting previously unselected package python3-mesonpy. Preparing to unpack .../239-python3-mesonpy_0.17.1-1_all.deb ... Unpacking python3-mesonpy (0.17.1-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../240-python3-networkx_3.2.1-4_all.deb ... Unpacking python3-networkx (3.2.1-4) ... Selecting previously unselected package python3-nibabel. Preparing to unpack .../241-python3-nibabel_5.2.1-2_all.deb ... Unpacking python3-nibabel (5.2.1-2) ... Selecting previously unselected package python3-numexpr. Preparing to unpack .../242-python3-numexpr_2.10.1-2+b1_amd64.deb ... Unpacking python3-numexpr (2.10.1-2+b1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../243-sphinx-common_7.4.7-4_all.deb ... Unpacking sphinx-common (7.4.7-4) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../244-python3-pygments_2.18.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../245-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../246-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../247-python3-snowballstemmer_2.2.0-4_all.deb ... Unpacking python3-snowballstemmer (2.2.0-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../248-python3-sphinx_7.4.7-4_all.deb ... Unpacking python3-sphinx (7.4.7-4) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../249-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-numpydoc. Preparing to unpack .../250-python3-numpydoc_1.6.0-2_all.deb ... Unpacking python3-numpydoc (1.6.0-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../251-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../252-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../253-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../254-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Selecting previously unselected package python3-setuptools-scm. Preparing to unpack .../255-python3-setuptools-scm_8.1.0-1_all.deb ... Unpacking python3-setuptools-scm (8.1.0-1) ... Selecting previously unselected package python3-skimage-lib:amd64. Preparing to unpack .../256-python3-skimage-lib_0.24.0-5_amd64.deb ... Unpacking python3-skimage-lib:amd64 (0.24.0-5) ... Selecting previously unselected package python3-tifffile. Preparing to unpack .../257-python3-tifffile_20240920-1_all.deb ... Unpacking python3-tifffile (20240920-1) ... Selecting previously unselected package python3-skimage. Preparing to unpack .../258-python3-skimage_0.24.0-5_all.deb ... Unpacking python3-skimage (0.24.0-5) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../259-python3-threadpoolctl_3.1.0-1_all.deb ... Unpacking python3-threadpoolctl (3.1.0-1) ... Selecting previously unselected package python3-sklearn-lib:amd64. Preparing to unpack .../260-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../261-python3-sklearn_1.4.2+dfsg-6_all.deb ... Unpacking python3-sklearn (1.4.2+dfsg-6) ... Selecting previously unselected package python3-sphinx-design. Preparing to unpack .../262-python3-sphinx-design_0.6.1-1_all.deb ... Unpacking python3-sphinx-design (0.6.1-1) ... Selecting previously unselected package python3-tables-lib. Preparing to unpack .../263-python3-tables-lib_3.10.1-1_amd64.deb ... Unpacking python3-tables-lib (3.10.1-1) ... Selecting previously unselected package python3-tables. Preparing to unpack .../264-python3-tables_3.10.1-1_all.deb ... Unpacking python3-tables (3.10.1-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../265-python3-tqdm_4.66.5-1_all.deb ... Unpacking python3-tqdm (4.66.5-1) ... Selecting previously unselected package python3-trx-python. Preparing to unpack .../266-python3-trx-python_0.3-1_all.deb ... Unpacking python3-trx-python (0.3-1) ... Selecting previously unselected package x11-xkb-utils. Preparing to unpack .../267-x11-xkb-utils_7.7+9_amd64.deb ... Unpacking x11-xkb-utils (7.7+9) ... Selecting previously unselected package xauth. Preparing to unpack .../268-xauth_1%3a1.1.2-1_amd64.deb ... Unpacking xauth (1:1.1.2-1) ... Selecting previously unselected package xkb-data. Preparing to unpack .../269-xkb-data_2.42-1_all.deb ... Unpacking xkb-data (2.42-1) ... Selecting previously unselected package xserver-common. Preparing to unpack .../270-xserver-common_2%3a21.1.14-1_all.deb ... Unpacking xserver-common (2:21.1.14-1) ... Selecting previously unselected package xvfb. Preparing to unpack .../271-xvfb_2%3a21.1.14-1_amd64.deb ... Unpacking xvfb (2:21.1.14-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libwayland-server0:amd64 (1.23.0-1+b1) ... Setting up libpciaccess0:amd64 (0.17-3+b2) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b2) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:amd64 (1.7.0-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b5) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b2) ... Setting up xkb-data (2.42-1) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libunwind8:amd64 (1.6.2-3.1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up ninja-build (1.12.1-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 6 22:50:57 UTC 2024. Universal Time is now: Wed Nov 6 22:50:57 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libblosc2-4:amd64 (2.15.1+ds-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b3) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libexpat1-dev:amd64 (2.6.3-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up liblzf1:amd64 (3.6-4+b2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:amd64 (1:3.6.0-10+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libglapi-mesa:amd64 (24.2.4-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-6) ... Setting up libvulkan1:amd64 (1.3.296.0-1) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:amd64 (1.3-1+b2) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up libblosc1:amd64 (1.21.5+ds-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.7-1+b2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libxkbfile1:amd64 (1:1.1.0-1+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up python-tables-data (3.10.1-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b3) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.2-2) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxpm4:amd64 (1:3.5.17-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up python3.12-doc (3.12.6-1) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libxfont2:amd64 (1:2.0.6-1+b2) ... Setting up python3-doc (3.12.6-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up python3.12-tk (3.12.6-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-1) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up sphinx-common (7.4.7-4) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up mesa-libgallium:amd64 (24.2.4-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libxmu6:amd64 (2:1.1.3-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up libgbm1:amd64 (24.2.4-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.6-1) ... Setting up libgl1-mesa-dri:amd64 (24.2.4-1) ... Setting up debhelper (13.20) ... Setting up libxaw7:amd64 (2:1.0.14-1+b3) ... Setting up libpython3.12t64:amd64 (3.12.6-1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up libglx-mesa0:amd64 (24.2.4-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up x11-xkb-utils (7.7+9) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:amd64 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b5) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.6-1) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-cpuinfo (9.0.0+git20221119-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:amd64 (5.3.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-lazy-loader (0.4-1) ... Setting up xserver-common (2:21.1.14-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-jsonpickle (3.3.0+dfsg-1) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pyproject-metadata (0.9.0~rc1-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up xvfb (2:21.1.14-1) ... Setting up python3-tqdm (4.66.5-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-tk:amd64 (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... Setting up libpython3-all-dev:amd64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-joblib (1.3.2-4) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up meson (1.6.0-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-mesonpy (0.17.1-1) ... Setting up python3-contourpy (1.3.0-2) ... Setting up python3-imageio (2.36.0-1) ... Setting up dh-python (6.20241024) ... Setting up python3-deepdiff (6.7.1-2) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-skimage-lib:amd64 (0.24.0-5) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-tables-lib (3.10.1-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-tifffile (20240920-1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-nibabel (5.2.1-2) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-sklearn (1.4.2+dfsg-6) ... Setting up python3-numexpr (2.10.1-2+b1) ... Setting up python3-trx-python (0.3-1) ... Setting up python3-tables (3.10.1-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-matplotlib (3.8.3-3) ... Setting up python3-skimage (0.24.0-5) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-sphinx-design (0.6.1-1) ... Setting up python3-numpydoc (1.6.0-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dipy-1.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dipy_1.9.0-8_source.changes dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 1.9.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_auto_clean || true rm -rf .pybuild __pycache__ find dipy -name "*\.c" -delete make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules execute_before_dh_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' rm -rf reference/*.rst rm -rf reference_cmd/*.rst rm -rf examples_revamped cd examples_built && find . -not -name "README" -not -name ".gitignore" -exec rm -rfd {} \; || true rm: refusing to remove '.' or '..' directory: skipping '.' rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[2]: [Makefile:32: clean] Error 1 (ignored) make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' chmod 0644 doc/examples/*.py dh_auto_build I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/x86_64-linux-gnu * Building wheel... + meson setup /build/reproducible-path/dipy-1.9.0 /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --native-file=/build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/meson-python-native-file.ini The Meson build system Version: 1.6.0 Source dir: /build/reproducible-path/dipy-1.9.0 Build dir: /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki Build type: native build Project name: dipy Project version: 1.9.0 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-6) 14.2.0") C linker for the host machine: cc ld.bfd 2.43.1 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-6) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.43.1 Cython compiler for the host machine: cython (cython 3.0.11) Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/bin/python3.12) Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency python found: YES 3.12 Program cython found: YES (/usr/bin/cython) Library m found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-format-extra-args: YES Compiler for C++ supports arguments -Wno-format: NO Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Run-time dependency OpenMP found: YES 4.5 Checking if "SSE intrinsics" compiles: YES Checking if "compiler supports SSE4.1 intrinsics" : links: NO Checking if "compiler supports AVX intrinsics" : links: NO Checking if "ARM NEON intrinsics" compiles: NO Build targets in project: 45 dipy 1.9.0 User defined options Native files : /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/meson-python-native-file.ini b_ndebug : if-release b_vscrt : md buildtype : release libdir : lib/x86_64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja Generating targets: 0%| | 0/45 eta ? Generating targets: 58%|█████▊ | 26/45 eta 00:00 Writing build.ninja: 0%| | 0/188 eta ? + /usr/bin/ninja --verbose [1/123] /usr/bin/python3.12 ../dipy/../tools/version_utils.py --source-root .. [2/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h [3/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h [4/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h [5/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd [6/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py [7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/bundlemin.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/bundlemin.pyx [8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/denoise/shift_twist_convolution.pyx [9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/denspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/denoise/denspeed.pyx [10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/quick_squash.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/reconst/quick_squash.pyx [11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/vec_val_sum.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/reconst/vec_val_sum.pyx [12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/reconst/eudx_direction_getter.pyx [13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/direction/closest_peak_direction_getter.pyx [14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/recspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/reconst/recspeed.pyx [15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/direction/ptt_direction_getter.pyx [16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/denoise/pca_noise_estimate.pyx [17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/direction/pmf.pyx [18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/nlmeans_block.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/denoise/nlmeans_block.pyx [19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/direction/bootstrap_direction_getter.pyx [20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/parzenhist.pyx [21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/expectmax.pyx [22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/transforms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/transforms.pyx [23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/enhancement_kernel.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/denoise/enhancement_kernel.pyx [24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/direction/probabilistic_direction_getter.pyx [25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/clustering_algorithms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/clustering_algorithms.pyx [26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/fbcmeasures.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/fbcmeasures.pyx [27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/omp.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/utils/omp.pyx [28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/cythonutils.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/cythonutils.pyx [29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/sumsqdiff.pyx [30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/metricspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/metricspeed.pyx [31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/featurespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/featurespeed.pyx [32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/utils/fast_numpy.pyx [33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/distances.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/distances.pyx [34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/direction_getter.pyx [35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/propspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/propspeed.pyx [36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/interpolation.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/core/interpolation.pyx [37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/crosscorr.pyx [38/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/mrf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/mrf.pyx [39/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/localtrack.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/localtrack.pyx [40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/clusteringspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/segment/clusteringspeed.pyx [41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/streamlinespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/streamlinespeed.pyx [42/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/vox2track.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/vox2track.pyx [43/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/test_fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/utils/tests/test_fast_numpy.pyx [44/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/tracking/stopping_criterion.pyx [45/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/vector_fields.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy ../dipy/align/vector_fields.pyx [46/123] cc -Idipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -MF dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o.d -o dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -c dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/quick_squash.c [47/123] cc -Idipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -MF dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o.d -o dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -c dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/bundlemin.c [48/123] cc -Idipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/shift_twist_convolution.c [49/123] cc -Idipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -MF dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o.d -o dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -c dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/ptt_direction_getter.c [50/123] cc -Idipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -MF dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o.d -o dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -c dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/eudx_direction_getter.c [51/123] cc -Idipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -MF dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/vec_val_sum.c [52/123] cc -Idipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -MF dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o.d -o dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -c dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/nlmeans_block.c [53/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c [54/123] cc -Idipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o -MF dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o.d -o dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o -c dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/denspeed.c [55/123] cc -Idipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -MF dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o.d -o dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -c dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c [56/123] cc -Idipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c [57/123] cc -Idipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -MF dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o.d -o dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -c dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c [58/123] cc -Idipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c [59/123] cc -Idipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/transforms.c [60/123] cc -Idipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -MF dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o.d -o dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -c dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/enhancement_kernel.c [61/123] cc -Idipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/fast_numpy.c [62/123] cc -Idipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -MF dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o.d -o dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -c dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/clustering_algorithms.c [63/123] cc -Idipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -MF dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o.d -o dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -c dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/cythonutils.c [64/123] cc -o dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [65/123] cc -o dipy/align/transforms.cpython-312-x86_64-linux-gnu.so dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [66/123] cc -o dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_denspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [67/123] cc -o dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [68/123] cc -o dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [69/123] cc -o dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [70/123] cc -o dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [71/123] cc -o dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [72/123] cc -o dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [73/123] cc -Idipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/omp.c [74/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [75/123] cc -o dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_pmf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [76/123] cc -o dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [77/123] cc -o dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [78/123] cc -o dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [79/123] cc -o dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [80/123] cc -o dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [81/123] cc -o dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_cythonutils.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [82/123] cc -o dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [83/123] cc -o dipy/utils/omp.cpython-312-x86_64-linux-gnu.so dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [84/123] cc -Idipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -MF dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o.d -o dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -c dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/recspeed.c [85/123] cc -o dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [86/123] cc -Idipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -MF dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o.d -o dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -c dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/direction_getter.c [87/123] cc -o dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [88/123] cc -Idipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o.d -o dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -c dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/propspeed.c [89/123] cc -o dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_propspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [90/123] cc -Idipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -MF dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o.d -o dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -c dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c [91/123] cc -o dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [92/123] cc -Idipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -MF dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o.d -o dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -c dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/clusteringspeed.c [93/123] cc -o dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [94/123] cc -Idipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vox2track.c.o -MF dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vox2track.c.o.d -o dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vox2track.c.o -c dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/vox2track.c [95/123] cc -o dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vox2track.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [96/123] cc -Idipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/metricspeed.c [97/123] cc -Idipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -MF dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o.d -o dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -c dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/mrf.c [98/123] cc -o dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [99/123] cc -o dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so.p/meson-generated_mrf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [100/123] cc -Idipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -MF dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o.d -o dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -c dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/localtrack.c [101/123] cc -o dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so.p/meson-generated_localtrack.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [102/123] cc -Idipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c In file included from /usr/include/string.h:548, from /usr/include/python3.12/Python.h:26, from dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:16: In function 'memcpy', inlined from '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state' at dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:29890:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: '*(long unsigned int *)(&__pyx_t_1[0])' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c: In function '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state': dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c:29864:10: note: '*(long unsigned int *)(&__pyx_t_1[0])' was declared here 29864 | double __pyx_t_1[1]; | ^~~~~~~~~ [103/123] cc -o dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [104/123] cc -Idipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/featurespeed.c [105/123] cc -o dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [106/123] cc -Idipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -MF dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o.d -o dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -c dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c [107/123] cc -o dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [108/123] cc -Idipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -MF dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o.d -o dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -c dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c [109/123] cc -o dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [110/123] cc -Idipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -MF dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o.d -o dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/fbcmeasures.c [111/123] cc -o dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [112/123] cc -Idipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p -Idipy/utils/tests -I../dipy/utils/tests -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -MF dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o.d -o dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -c dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/test_fast_numpy.c [113/123] cc -o dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [114/123] cc -Idipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -MF dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o.d -o dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -c dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/streamlinespeed.c [115/123] cc -o dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [116/123] cc -Idipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -MF dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o.d -o dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -c dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c [117/123] cc -o dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/meson-generated_crosscorr.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [118/123] cc -Idipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/distances.c [119/123] cc -o dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [120/123] cc -Idipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p -Idipy/core -I../dipy/core -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/meson-generated_interpolation.c.o -MF dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/meson-generated_interpolation.c.o.d -o dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/meson-generated_interpolation.c.o -c dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/interpolation.c [121/123] cc -o dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/meson-generated_interpolation.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [122/123] cc -Idipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/x86_64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -mfpmath=sse -msse -msse2 -MD -MQ dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vector_fields.c.o -MF dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vector_fields.c.o.d -o dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vector_fields.c.o -c dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/vector_fields.c [123/123] cc -o dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/meson-generated_vector_fields.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [1/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/version.py [2/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so [3/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so [4/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so [5/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so [6/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so [7/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/transforms.cpython-312-x86_64-linux-gnu.so [8/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so [9/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so [10/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so [11/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so [12/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so [13/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so [14/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so [15/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so [16/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so [17/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so [18/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so [19/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so [20/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so [21/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so [22/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so [23/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so [24/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so [25/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so [26/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so [27/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so [28/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so [29/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so [30/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so [31/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so [32/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so [33/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so [34/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so [35/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so [36/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so [37/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so [38/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so [39/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/utils/omp.cpython-312-x86_64-linux-gnu.so [40/526] /build/reproducible-path/dipy-1.9.0/.mesonpy-r003c1ki/dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so [41/526] /build/reproducible-path/dipy-1.9.0/dipy/__init__.py [42/526] /build/reproducible-path/dipy-1.9.0/dipy/conftest.py [43/526] /build/reproducible-path/dipy-1.9.0/dipy/pkg_info.py [44/526] /build/reproducible-path/dipy-1.9.0/dipy/align/__init__.py [45/526] /build/reproducible-path/dipy-1.9.0/dipy/align/_public.py [46/526] /build/reproducible-path/dipy-1.9.0/dipy/align/cpd.py [47/526] /build/reproducible-path/dipy-1.9.0/dipy/align/imaffine.py [48/526] /build/reproducible-path/dipy-1.9.0/dipy/align/imwarp.py [49/526] /build/reproducible-path/dipy-1.9.0/dipy/align/metrics.py [50/526] /build/reproducible-path/dipy-1.9.0/dipy/align/reslice.py [51/526] /build/reproducible-path/dipy-1.9.0/dipy/align/scalespace.py [52/526] /build/reproducible-path/dipy-1.9.0/dipy/align/streamlinear.py [53/526] /build/reproducible-path/dipy-1.9.0/dipy/align/streamwarp.py [54/526] /build/reproducible-path/dipy-1.9.0/dipy/align/fused_types.pxd [55/526] /build/reproducible-path/dipy-1.9.0/dipy/align/transforms.pxd [56/526] /build/reproducible-path/dipy-1.9.0/dipy/align/vector_fields.pxd [57/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/__init__.py [58/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_api.py [59/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_crosscorr.py [60/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_expectmax.py [61/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_imaffine.py [62/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_imwarp.py [63/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_metrics.py [64/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_parzenhist.py [65/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_reslice.py [66/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_scalespace.py [67/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_streamlinear.py [68/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_streamwarp.py [69/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_sumsqdiff.py [70/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_transforms.py [71/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_vector_fields.py [72/526] /build/reproducible-path/dipy-1.9.0/dipy/align/tests/test_whole_brain_slr.py [73/526] /build/reproducible-path/dipy-1.9.0/dipy/core/__init__.py [74/526] /build/reproducible-path/dipy-1.9.0/dipy/core/geometry.py [75/526] /build/reproducible-path/dipy-1.9.0/dipy/core/gradients.py [76/526] /build/reproducible-path/dipy-1.9.0/dipy/core/graph.py [77/526] /build/reproducible-path/dipy-1.9.0/dipy/core/histeq.py [78/526] /build/reproducible-path/dipy-1.9.0/dipy/core/ndindex.py [79/526] /build/reproducible-path/dipy-1.9.0/dipy/core/onetime.py [80/526] /build/reproducible-path/dipy-1.9.0/dipy/core/optimize.py [81/526] /build/reproducible-path/dipy-1.9.0/dipy/core/profile.py [82/526] /build/reproducible-path/dipy-1.9.0/dipy/core/rng.py [83/526] /build/reproducible-path/dipy-1.9.0/dipy/core/sphere.py [84/526] /build/reproducible-path/dipy-1.9.0/dipy/core/sphere_stats.py [85/526] /build/reproducible-path/dipy-1.9.0/dipy/core/subdivide_octahedron.py [86/526] /build/reproducible-path/dipy-1.9.0/dipy/core/wavelet.py [87/526] /build/reproducible-path/dipy-1.9.0/dipy/core/interpolation.pxd [88/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/__init__.py [89/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_geometry.py [90/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_gradients.py [91/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_graph.py [92/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_interpolation.py [93/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_ndindex.py [94/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_optimize.py [95/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_rng.py [96/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_sphere.py [97/526] /build/reproducible-path/dipy-1.9.0/dipy/core/tests/test_subdivide_octahedron.py [98/526] /build/reproducible-path/dipy-1.9.0/dipy/data/__init__.py [99/526] /build/reproducible-path/dipy-1.9.0/dipy/data/fetcher.py [100/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/55dir_grad.bval [101/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/55dir_grad.bvec [102/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/eg_3voxels.pkl [103/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/aniso_vox.nii.gz [104/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/ascm_out_test.nii.gz [105/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/C.npy [106/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/C1.pkl.gz [107/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/C3.pkl.gz [108/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/cb_2.npz [109/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/circle.npy [110/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dipy_colormaps.json [111/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dki_constraint_0.npz [112/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dki_constraint_2.npz [113/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dki_constraint_4.npz [114/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dki_constraint.npz [115/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dsi515_b_table.txt [116/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/dsi4169_b_table.txt [117/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/EuDX_small_25.trk [118/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/evenly_distributed_sphere_362.npz [119/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/evenly_distributed_sphere_642.npz [120/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/evenly_distributed_sphere_724.npz [121/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/fib0.pkl.gz [122/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/fib1.pkl.gz [123/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/fib2.pkl.gz [124/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/func_coef.nii.gz [125/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/func_discrete.nii.gz [126/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/grad_514.txt [127/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/gtab_3shell.txt [128/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/gtab_isbi2013_2shell.txt [129/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/gtab_taiwan_dsi.txt [130/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_0.npz [131/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_2.npz [132/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_4.npz [133/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_6.npz [134/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_8.npz [135/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/hermite_constraint_10.npz [136/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/life_matlab_rmse.npy [137/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/life_matlab_weights.npy [138/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/minimal_bundles.zip [139/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/record_horizon.log.gz [140/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/repulsion100.npz [141/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/repulsion200.npz [142/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/repulsion724.npz [143/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/S0_10slices.nii.gz [144/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/ScannerVectors_GQI101.txt [145/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_25.bval [146/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_25.bvec [147/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_25.nii.gz [148/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_64D.bval [149/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_64D.bvals.npy [150/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_64D.bvec [151/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_64D.gradients.npy [152/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_64D.nii [153/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_101D.bval [154/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_101D.bvec [155/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/small_101D.nii.gz [156/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/sphere_grad.txt [157/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/t1_coronal_slice.npy [158/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/tdesign45.txt [159/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/test_piesno.nii.gz [160/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/test_ui_text_block.npz [161/526] /build/reproducible-path/dipy-1.9.0/dipy/data/files/tracks300.trk [162/526] /build/reproducible-path/dipy-1.9.0/dipy/data/tests/__init__.py [163/526] /build/reproducible-path/dipy-1.9.0/dipy/data/tests/test_data.py [164/526] /build/reproducible-path/dipy-1.9.0/dipy/data/tests/test_fetcher.py [165/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/__init__.py [166/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/adaptive_soft_matching.py [167/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/gibbs.py [168/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/localpca.py [169/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/nlmeans.py [170/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/noise_estimate.py [171/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/non_local_means.py [172/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/patch2self.py [173/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/__init__.py [174/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_ascm.py [175/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_denoise.py [176/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_gibbs.py [177/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_kernel.py [178/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_lpca.py [179/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_nlmeans.py [180/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_noise_estimate.py [181/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_non_local_means.py [182/526] /build/reproducible-path/dipy-1.9.0/dipy/denoise/tests/test_patch2self.py [183/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/__init__.py [184/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/peaks.py [185/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/closest_peak_direction_getter.pxd [186/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/pmf.pxd [187/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/probabilistic_direction_getter.pxd [188/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/__init__.py [189/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/test_bootstrap_direction_getter.py [190/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/test_peaks.py [191/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/test_pmf.py [192/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/test_prob_direction_getter.py [193/526] /build/reproducible-path/dipy-1.9.0/dipy/direction/tests/test_ptt_direction_getter.py [194/526] /build/reproducible-path/dipy-1.9.0/dipy/io/__init__.py [195/526] /build/reproducible-path/dipy-1.9.0/dipy/io/dpy.py [196/526] /build/reproducible-path/dipy-1.9.0/dipy/io/gradients.py [197/526] /build/reproducible-path/dipy-1.9.0/dipy/io/image.py [198/526] /build/reproducible-path/dipy-1.9.0/dipy/io/peaks.py [199/526] /build/reproducible-path/dipy-1.9.0/dipy/io/pickles.py [200/526] /build/reproducible-path/dipy-1.9.0/dipy/io/stateful_tractogram.py [201/526] /build/reproducible-path/dipy-1.9.0/dipy/io/streamline.py [202/526] /build/reproducible-path/dipy-1.9.0/dipy/io/surface.py [203/526] /build/reproducible-path/dipy-1.9.0/dipy/io/utils.py [204/526] /build/reproducible-path/dipy-1.9.0/dipy/io/vtk.py [205/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/__init__.py [206/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_dpy.py [207/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_io.py [208/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_io_gradients.py [209/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_io_peaks.py [210/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_stateful_tractogram.py [211/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_streamline.py [212/526] /build/reproducible-path/dipy-1.9.0/dipy/io/tests/test_utils.py [213/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/__init__.py [214/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/cnn_1d_denoising.py [215/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/deepn4.py [216/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/evac.py [217/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/histo_resdnn.py [218/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/model.py [219/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/synb0.py [220/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/utils.py [221/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/__init__.py [222/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_cnn_1denoiser.py [223/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_deepn4.py [224/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_evac.py [225/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_histo_resdnn.py [226/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_synb0.py [227/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_tf.py [228/526] /build/reproducible-path/dipy-1.9.0/dipy/nn/tests/test_utils.py [229/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/__init__.py [230/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/base.py [231/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/cache.py [232/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/cross_validation.py [233/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/csdeconv.py [234/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/cti.py [235/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/dki_micro.py [236/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/dki.py [237/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/dsi.py [238/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/dti.py [239/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/forecast.py [240/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/fwdti.py [241/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/gqi.py [242/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/ivim.py [243/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/mapmri.py [244/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/mcsd.py [245/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/msdki.py [246/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/multi_voxel.py [247/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/odf.py [248/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/qtdmri.py [249/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/qti.py [250/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/rumba.py [251/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/sfm.py [252/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/shm.py [253/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/shore.py [254/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/utils.py [255/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/__init__.py [256/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_cache.py [257/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_cross_validation.py [258/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_csdeconv.py [259/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_cti.py [260/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dki.py [261/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dki_micro.py [262/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dsi.py [263/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dsi_deconv.py [264/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dsi_metrics.py [265/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_dti.py [266/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_eudx_dg.py [267/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_forecast.py [268/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_fwdti.py [269/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_gqi.py [270/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_ivim.py [271/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_mapmri.py [272/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_mcsd.py [273/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_msdki.py [274/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_multi_voxel.py [275/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_odf.py [276/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_peak_finding.py [277/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_qtdmri.py [278/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_qti.py [279/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_reco_utils.py [280/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_rumba.py [281/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_sfm.py [282/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_shm.py [283/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_shore.py [284/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_shore_metrics.py [285/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_shore_odf.py [286/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_utils.py [287/526] /build/reproducible-path/dipy-1.9.0/dipy/reconst/tests/test_vec_val_vect.py [288/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/__init__.py [289/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/bundles.py [290/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/clustering.py [291/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/fss.py [292/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/mask.py [293/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/metric.py [294/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/threshold.py [295/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tissue.py [296/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/__init__.py [297/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_adjustment.py [298/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_bundles.py [299/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_clustering.py [300/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_feature.py [301/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_fss.py [302/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_mask.py [303/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_metric.py [304/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_mrf.py [305/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_qbx.py [306/526] /build/reproducible-path/dipy-1.9.0/dipy/segment/tests/test_quickbundles.py [307/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/__init__.py [308/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/phantom.py [309/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/voxel.py [310/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/tests/__init__.py [311/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/tests/test_phantom.py [312/526] /build/reproducible-path/dipy-1.9.0/dipy/sims/tests/test_voxel.py [313/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/__init__.py [314/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/analysis.py [315/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/resampling.py [316/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/tests/__init__.py [317/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/tests/test_analysis.py [318/526] /build/reproducible-path/dipy-1.9.0/dipy/stats/tests/test_resampling.py [319/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/__init__.py [320/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/decorators.py [321/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/memory.py [322/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/spherepoints.py [323/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/tests/__init__.py [324/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/tests/test_decorators.py [325/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/tests/test_memory.py [326/526] /build/reproducible-path/dipy-1.9.0/dipy/testing/tests/test_testing.py [327/526] /build/reproducible-path/dipy-1.9.0/dipy/tests/__init__.py [328/526] /build/reproducible-path/dipy-1.9.0/dipy/tests/scriptrunner.py [329/526] /build/reproducible-path/dipy-1.9.0/dipy/tests/test_scripts.py [330/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/__init__.py [331/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/_utils.py [332/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/learning.py [333/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/life.py [334/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/local_tracking.py [335/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/mesh.py [336/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/metrics.py [337/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/streamline.py [338/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/utils.py [339/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/__init__.py [340/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_distances.py [341/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_fbc.py [342/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_learning.py [343/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_life.py [344/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_mesh.py [345/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_metrics.py [346/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_propagation.py [347/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_stopping_criterion.py [348/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_streamline.py [349/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_track_volumes.py [350/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_tracking.py [351/526] /build/reproducible-path/dipy-1.9.0/dipy/tracking/tests/test_utils.py [352/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/__init__.py [353/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/arrfuncs.py [354/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/deprecator.py [355/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/multiproc.py [356/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/optpkg.py [357/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/parallel.py [358/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tractogram.py [359/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tripwire.py [360/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/volume.py [361/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/__init__.py [362/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_arrfuncs.py [363/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_deprecator.py [364/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_multiproc.py [365/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_omp.py [366/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_optpkg.py [367/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_parallel.py [368/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_tractogram.py [369/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_tripwire.py [370/526] /build/reproducible-path/dipy-1.9.0/dipy/utils/tests/test_volume.py [371/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/__init__.py [372/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/gmem.py [373/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/panel.py [374/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/plotting.py [375/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/projections.py [376/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/regtools.py [377/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/streamline.py [378/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/__init__.py [379/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/app.py [380/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/util.py [381/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/__init__.py [382/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/base.py [383/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/cluster.py [384/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/peak.py [385/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/roi.py [386/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/slice.py [387/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/surface.py [388/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/tests/__init__.py [389/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/tab/tests/test_base.py [390/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/visualizer/__init__.py [391/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/visualizer/cluster.py [392/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/visualizer/slice.py [393/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/visualizer/surface.py [394/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/horizon/visualizer/peak.py [395/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/__init__.py [396/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/test_apps.py [397/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/test_fury.py [398/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/test_regtools.py [399/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/test_streamline.py [400/526] /build/reproducible-path/dipy-1.9.0/dipy/viz/tests/test_util.py [401/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/__init__.py [402/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/align.py [403/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/base.py [404/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/cli.py [405/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/combined_workflow.py [406/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/denoise.py [407/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/docstring_parser.py [408/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/flow_runner.py [409/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/io.py [410/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/mask.py [411/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/multi_io.py [412/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/nn.py [413/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/reconst.py [414/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/segment.py [415/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/stats.py [416/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tracking.py [417/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/viz.py [418/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/workflow.py [419/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/__init__.py [420/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_align.py [421/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_denoise.py [422/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_docstring_parser.py [423/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_iap.py [424/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_io.py [425/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_masking.py [426/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_nn.py [427/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_csa_csd.py [428/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_dki.py [429/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_dti.py [430/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_dsi.py [431/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_ivim.py [432/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_mapmri.py [433/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_reconst_rumba.py [434/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_segment.py [435/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_stats.py [436/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_tracking.py [437/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_viz.py [438/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/test_workflow.py [439/526] /build/reproducible-path/dipy-1.9.0/dipy/workflows/tests/workflow_tests_utils.py [440/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/affine_registration_3d.py [441/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/affine_registration_masks.py [442/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/afq_tract_profiles.py [443/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/brain_extraction_dwi.py [444/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundle_assignment_maps.py [445/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundle_extraction.py [446/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundle_group_registration.py [447/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundle_registration.py [448/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundle_shape_similarity.py [449/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/bundlewarp_registration.py [450/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/cluster_confidence.py [451/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/combined_workflow_creation.py [452/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/contextual_enhancement.py [453/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_ascm.py [454/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_gibbs.py [455/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_localpca.py [456/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_mppca.py [457/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_nlmeans.py [458/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/denoise_patch2self.py [459/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/fast_streamline_search.py [460/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/fiber_to_bundle_coherence.py [461/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/gradients_spheres.py [462/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/histology_resdnn.py [463/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/kfold_xval.py [464/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/linear_fascicle_evaluation.py [465/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/motion_correction.py [466/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/path_length_map.py [467/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/piesno.py [468/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/quick_start.py [469/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_csa.py [470/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_csa_parallel.py [471/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_csd.py [472/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_csd_parallel.py [473/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_cti.py [474/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dki.py [475/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dki_micro.py [476/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dsi.py [477/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dsi_metrics.py [478/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dsid.py [479/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_dti.py [480/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_forecast.py [481/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_fwdti.py [482/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_gqi.py [483/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_ivim.py [484/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_mapmri.py [485/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_mcsd.py [486/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_msdki.py [487/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_qtdmri.py [488/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_qti.py [489/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_qtiplus.py [490/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_rumba.py [491/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_sfm.py [492/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_sh.py [493/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_shore.py [494/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reconst_shore_metrics.py [495/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/register_binary_fuzzy.py [496/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/reslice_datasets.py [497/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/restore_dti.py [498/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/segment_clustering_features.py [499/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/segment_clustering_metrics.py [500/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/segment_extending_clustering_framework.py [501/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/segment_quickbundles.py [502/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/simulate_dki.py [503/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/simulate_multi_tensor.py [504/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/snr_in_cc.py [505/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/streamline_formats.py [506/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/streamline_length.py [507/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/streamline_registration.py [508/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/streamline_tools.py [509/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/surface_seed.py [510/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/syn_registration_2d.py [511/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/syn_registration_3d.py [512/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tissue_classification.py [513/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_bootstrap_peaks.py [514/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_deterministic.py [515/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_introduction_eudx.py [516/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_pft.py [517/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_probabilistic.py [518/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_ptt.py [519/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_rumba.py [520/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_sfm.py [521/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_stopping_criterion.py [522/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_advanced.py [523/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_bundles.py [524/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_roi_contour.py [525/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_slice.py [526/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/workflow_creation.py Successfully built dipy-1.9.0-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module find -name func_coef.nii.gz -print -exec chmod 0644 '{}' ';' ./dipy/data/files/func_coef.nii.gz ./.pybuild/cpython3_3.12_dipy/build/dipy/data/files/func_coef.nii.gz make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Do not test just after build, lets install and then test make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' py3versions: no X-Python3-Version in control file, using supported versions # Prune duplicate LICENSE file find debian/ -name LICENSE -delete # Only now lets build docs cd doc/ \ && PYTHONPATH=/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build \ /usr/bin/make html SPHINXOPTS="-D today=\"September 24, 2024\"" make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' tools/build_modref_templates.py dipy reference /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos Generating docs for dipy: -> dipy Generating docs for dipy.align: -> dipy.align -> dipy.align._public /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py 718 -> dipy.align.cpd -> dipy.align.imaffine -> dipy.align.imwarp -> dipy.align.metrics -> dipy.align.reslice -> dipy.align.scalespace -> dipy.align.streamlinear -> dipy.align.streamwarp Generating docs for dipy.core: -> dipy.core WARNING: Empty - dipy.core -> dipy.core.geometry -> dipy.core.gradients -> dipy.core.graph -> dipy.core.histeq -> dipy.core.ndindex -> dipy.core.onetime -> dipy.core.optimize -> dipy.core.profile -> dipy.core.rng -> dipy.core.sphere -> dipy.core.sphere_stats -> dipy.core.subdivide_octahedron -> dipy.core.wavelet Generating docs for dipy.data: -> dipy.data -> dipy.data.fetcher Generating docs for dipy.denoise: -> dipy.denoise WARNING: Empty - dipy.denoise -> dipy.denoise.adaptive_soft_matching -> dipy.denoise.gibbs -> dipy.denoise.localpca -> dipy.denoise.nlmeans -> dipy.denoise.noise_estimate -> dipy.denoise.non_local_means -> dipy.denoise.patch2self Generating docs for dipy.direction: -> dipy.direction WARNING: Empty - dipy.direction -> dipy.direction.peaks Generating docs for dipy.io: -> dipy.io WARNING: Empty - dipy.io -> dipy.io.dpy -> dipy.io.gradients -> dipy.io.image -> dipy.io.peaks -> dipy.io.pickles -> dipy.io.stateful_tractogram -> dipy.io.streamline -> dipy.io.surface -> dipy.io.utils -> dipy.io.vtk Generating docs for dipy.nn: -> dipy.nn WARNING: Empty - dipy.nn -> dipy.nn.cnn_1d_denoising -> dipy.nn.deepn4 -> dipy.nn.evac -> dipy.nn.histo_resdnn -> dipy.nn.model -> dipy.nn.synb0 -> dipy.nn.utils Generating docs for dipy.reconst: -> dipy.reconst WARNING: Empty - dipy.reconst -> dipy.reconst.base -> dipy.reconst.cache -> dipy.reconst.cross_validation -> dipy.reconst.csdeconv -> dipy.reconst.cti -> dipy.reconst.dki -> dipy.reconst.dki_micro -> dipy.reconst.dsi -> dipy.reconst.dti -> dipy.reconst.forecast -> dipy.reconst.fwdti -> dipy.reconst.gqi -> dipy.reconst.ivim -> dipy.reconst.mapmri -> dipy.reconst.mcsd -> dipy.reconst.msdki -> dipy.reconst.multi_voxel -> dipy.reconst.odf -> dipy.reconst.qtdmri -> dipy.reconst.qti -> dipy.reconst.rumba -> dipy.reconst.sfm -> dipy.reconst.shm -> dipy.reconst.shore -> dipy.reconst.utils Generating docs for dipy.segment: -> dipy.segment WARNING: Empty - dipy.segment -> dipy.segment.bundles -> dipy.segment.clustering -> dipy.segment.fss -> dipy.segment.mask -> dipy.segment.metric -> dipy.segment.threshold -> dipy.segment.tissue Generating docs for dipy.sims: -> dipy.sims WARNING: Empty - dipy.sims -> dipy.sims.phantom -> dipy.sims.voxel Generating docs for dipy.stats: -> dipy.stats WARNING: Empty - dipy.stats -> dipy.stats.analysis Generating docs for dipy.tracking: -> dipy.tracking WARNING: Empty - dipy.tracking -> dipy.tracking._utils WARNING: Empty - dipy.tracking._utils -> dipy.tracking.learning -> dipy.tracking.life -> dipy.tracking.local_tracking -> dipy.tracking.mesh -> dipy.tracking.metrics -> dipy.tracking.streamline -> dipy.tracking.utils Generating docs for dipy.version: -> dipy.version WARNING: Empty - dipy.version Generating docs for dipy.viz: -> dipy.viz WARNING: Empty - dipy.viz -> dipy.viz.gmem -> dipy.viz.horizon WARNING: Empty - dipy.viz.horizon -> dipy.viz.horizon.app -> dipy.viz.horizon.tab WARNING: Empty - dipy.viz.horizon.tab -> dipy.viz.horizon.tab.base -> dipy.viz.horizon.tab.cluster -> dipy.viz.horizon.tab.peak -> dipy.viz.horizon.tab.roi -> dipy.viz.horizon.tab.slice -> dipy.viz.horizon.tab.surface -> dipy.viz.horizon.util -> dipy.viz.horizon.visualizer WARNING: Empty - dipy.viz.horizon.visualizer -> dipy.viz.horizon.visualizer.cluster -> dipy.viz.horizon.visualizer.peak -> dipy.viz.horizon.visualizer.slice -> dipy.viz.horizon.visualizer.surface -> dipy.viz.panel -> dipy.viz.plotting -> dipy.viz.projections -> dipy.viz.regtools -> dipy.viz.streamline Generating docs for dipy.workflows: -> dipy.workflows WARNING: Empty - dipy.workflows -> dipy.workflows.align -> dipy.workflows.base -> dipy.workflows.cli -> dipy.workflows.combined_workflow -> dipy.workflows.denoise -> dipy.workflows.docstring_parser -> dipy.workflows.flow_runner -> dipy.workflows.io -> dipy.workflows.mask -> dipy.workflows.multi_io -> dipy.workflows.nn -> dipy.workflows.reconst -> dipy.workflows.segment -> dipy.workflows.stats -> dipy.workflows.tracking -> dipy.workflows.viz -> dipy.workflows.workflow 16 files written tools/docgen_cmd.py dipy reference_cmd /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos Generating docs for: dipy_align_affine (ImageRegistrationFlow) Done Generating docs for: dipy_align_syn (SynRegistrationFlow) Done Generating docs for: dipy_apply_transform (ApplyTransformFlow) Done Generating docs for: dipy_buan_lmm (LinearMixedModelsFlow) Done Generating docs for: dipy_buan_shapes (BundleShapeAnalysis) Done Generating docs for: dipy_buan_profiles (BundleAnalysisTractometryFlow) Done Generating docs for: dipy_bundlewarp (BundleWarpFlow) Done Generating docs for: dipy_correct_motion (MotionCorrectionFlow) Done Generating docs for: dipy_convert_tractogram (ConvertTractogramFlow) Done Generating docs for: dipy_convert_tensors (ConvertTensorsFlow) Done Generating docs for: dipy_denoise_nlmeans (NLMeansFlow) Done Generating docs for: dipy_denoise_lpca (LPCAFlow) Done Generating docs for: dipy_denoise_mppca (MPPCAFlow) Done Generating docs for: dipy_denoise_patch2self (Patch2SelfFlow) Done Generating docs for: dipy_evac_plus (EVACPlusFlow) Done Generating docs for: dipy_fetch (FetchFlow) Done Generating docs for: dipy_fit_csa (ReconstCSAFlow) Done Generating docs for: dipy_fit_csd (ReconstCSDFlow) Done Generating docs for: dipy_fit_dki (ReconstDkiFlow) Done Generating docs for: dipy_fit_dti (ReconstDtiFlow) Done Generating docs for: dipy_fit_dsi (ReconstDsiFlow) Done Generating docs for: dipy_fit_ivim (ReconstIvimFlow) Done Generating docs for: dipy_fit_mapmri (ReconstMAPMRIFlow) Done Generating docs for: dipy_mask (MaskFlow) Done Generating docs for: dipy_gibbs_ringing (GibbsRingingFlow) Done Generating docs for: dipy_horizon (HorizonFlow) Done Generating docs for: dipy_info (IoInfoFlow) Done Generating docs for: dipy_concatenate_tractograms (ConcatenateTractogramFlow) Done Generating docs for: dipy_labelsbundles (LabelsBundlesFlow) Done Generating docs for: dipy_median_otsu (MedianOtsuFlow) Done Generating docs for: dipy_recobundles (RecoBundlesFlow) Done Generating docs for: dipy_reslice (ResliceFlow) Done Generating docs for: dipy_sh_convert_mrtrix (ConvertSHFlow) Done Generating docs for: dipy_snr_in_cc (SNRinCCFlow) Done Generating docs for: dipy_split (SplitFlow) Done Generating docs for: dipy_track (LocalFiberTrackingPAMFlow) Done Generating docs for: dipy_track_pft (PFTrackingPAMFlow) Done Generating docs for: dipy_slr (SlrWithQbxFlow) Done Generating index.rst Done Build API docs...done. # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="September 24, 2024" . _build/html Running Sphinx v7.4.7 loading translations [en]... done Initializing Examples folder revamp plugin... Initializing GitHub plugin making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv... [autosummary] generating autosummary for: api_changes.rst, cite.rst, devel/benchmarking.rst, devel/coding_style_guideline.rst, devel/commit_codes.rst, devel/gitwash/configure_git.rst, devel/gitwash/development_workflow.rst, devel/gitwash/dot2_dot3.rst, devel/gitwash/following_latest.rst, devel/gitwash/forking_hell.rst, ..., theory/sh_basis.rst, theory/spherical.rst, user_guide/data.rst, user_guide/dataset_list.rst, user_guide/dependencies.rst, user_guide/getting_started.rst, user_guide/index.rst, user_guide/installation.rst, user_guide/introduction.rst, user_guide/mission.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 138 source files that are out of date updating environment: [new config] 138 added, 0 changed, 0 removed reading sources... [ 1%] api_changes reading sources... [ 1%] cite reading sources... [ 2%] devel/benchmarking reading sources... [ 3%] devel/coding_style_guideline reading sources... [ 4%] devel/commit_codes reading sources... [ 4%] devel/gitwash/configure_git reading sources... [ 5%] devel/gitwash/development_workflow reading sources... [ 6%] devel/gitwash/dot2_dot3 reading sources... [ 7%] devel/gitwash/following_latest reading sources... [ 7%] devel/gitwash/forking_hell reading sources... [ 8%] devel/gitwash/git_development reading sources... [ 9%] devel/gitwash/git_install reading sources... [ 9%] devel/gitwash/git_intro reading sources... [ 10%] devel/gitwash/git_resources reading sources... [ 11%] devel/gitwash/index reading sources... [ 12%] devel/gitwash/maintainer_workflow reading sources... [ 12%] devel/gitwash/patching reading sources... [ 13%] devel/gitwash/set_up_fork reading sources... [ 14%] devel/index reading sources... [ 14%] devel/installation_from_source reading sources... [ 15%] devel/intro reading sources... [ 16%] devel/make_release reading sources... [ 17%] devel/toolchain reading sources... [ 17%] developers reading sources... [ 18%] faq reading sources... [ 19%] gimbal_lock reading sources... [ 20%] glossary reading sources... [ 20%] index reading sources... [ 21%] interfaces/basic_flow reading sources... [ 22%] interfaces/buan_flow reading sources... [ 22%] interfaces/bundle_segmentation_flow reading sources... [ 23%] interfaces/bundlewarp_registration_flow reading sources... [ 24%] interfaces/data_fetch reading sources... [ 25%] interfaces/denoise_flow reading sources... [ 25%] interfaces/gibbs_unringing_flow reading sources... [ 26%] interfaces/index reading sources... [ 27%] interfaces/motion_flow reading sources... [ 28%] interfaces/reconstruction_flow reading sources... [ 28%] interfaces/registration_flow reading sources... [ 29%] interfaces/tracking_flow reading sources... [ 30%] old_highlights reading sources... [ 30%] old_news reading sources... [ 31%] recipes reading sources... [ 32%] reconstruction_models_list reading sources... [ 33%] reference/dipy reading sources... [ 33%] reference/dipy.align reading sources... [ 34%] reference/dipy.core reading sources... [ 35%] reference/dipy.data reading sources... [ 36%] reference/dipy.denoise reading sources... [ 36%] reference/dipy.direction reading sources... [ 37%] reference/dipy.io reading sources... [ 38%] reference/dipy.nn reading sources... [ 38%] reference/dipy.reconst reading sources... [ 39%] reference/dipy.segment reading sources... [ 40%] reference/dipy.sims reading sources... [ 41%] reference/dipy.stats reading sources... [ 41%] reference/dipy.tracking reading sources... [ 42%] reference/dipy.version reading sources... [ 43%] reference/dipy.viz reading sources... [ 43%] reference/dipy.workflows reading sources... [ 44%] reference/index reading sources... [ 45%] reference_cmd/dipy_align_affine reading sources... [ 46%] reference_cmd/dipy_align_syn reading sources... [ 46%] reference_cmd/dipy_apply_transform reading sources... [ 47%] reference_cmd/dipy_buan_lmm reading sources... [ 48%] reference_cmd/dipy_buan_profiles reading sources... [ 49%] reference_cmd/dipy_buan_shapes reading sources... [ 49%] reference_cmd/dipy_bundlewarp reading sources... [ 50%] reference_cmd/dipy_concatenate_tractograms reading sources... [ 51%] reference_cmd/dipy_convert_tensors reading sources... [ 51%] reference_cmd/dipy_convert_tractogram reading sources... [ 52%] reference_cmd/dipy_correct_motion reading sources... [ 53%] reference_cmd/dipy_denoise_lpca reading sources... [ 54%] reference_cmd/dipy_denoise_mppca reading sources... [ 54%] reference_cmd/dipy_denoise_nlmeans reading sources... [ 55%] reference_cmd/dipy_denoise_patch2self reading sources... [ 56%] reference_cmd/dipy_evac_plus reading sources... [ 57%] reference_cmd/dipy_fetch reading sources... [ 57%] reference_cmd/dipy_fit_csa reading sources... [ 58%] reference_cmd/dipy_fit_csd reading sources... [ 59%] reference_cmd/dipy_fit_dki reading sources... [ 59%] reference_cmd/dipy_fit_dsi reading sources... [ 60%] reference_cmd/dipy_fit_dti reading sources... [ 61%] reference_cmd/dipy_fit_ivim reading sources... [ 62%] reference_cmd/dipy_fit_mapmri reading sources... [ 62%] reference_cmd/dipy_gibbs_ringing reading sources... [ 63%] reference_cmd/dipy_horizon reading sources... [ 64%] reference_cmd/dipy_info reading sources... [ 64%] reference_cmd/dipy_labelsbundles reading sources... [ 65%] reference_cmd/dipy_mask reading sources... [ 66%] reference_cmd/dipy_median_otsu reading sources... [ 67%] reference_cmd/dipy_recobundles reading sources... [ 67%] reference_cmd/dipy_reslice reading sources... [ 68%] reference_cmd/dipy_sh_convert_mrtrix reading sources... [ 69%] reference_cmd/dipy_slr reading sources... [ 70%] reference_cmd/dipy_snr_in_cc reading sources... [ 70%] reference_cmd/dipy_split reading sources... [ 71%] reference_cmd/dipy_track reading sources... [ 72%] reference_cmd/dipy_track_pft reading sources... [ 72%] reference_cmd/index reading sources... [ 73%] release_notes/release0.10 reading sources... [ 74%] release_notes/release0.11 reading sources... [ 75%] release_notes/release0.12 reading sources... [ 75%] release_notes/release0.13 reading sources... [ 76%] release_notes/release0.14 reading sources... [ 77%] release_notes/release0.15 reading sources... [ 78%] release_notes/release0.16 reading sources... [ 78%] release_notes/release0.6 reading sources... [ 79%] release_notes/release0.7 reading sources... [ 80%] release_notes/release0.8 reading sources... [ 80%] release_notes/release0.9 reading sources... [ 81%] release_notes/release1.0 reading sources... [ 82%] release_notes/release1.1 reading sources... [ 83%] release_notes/release1.2 reading sources... [ 83%] release_notes/release1.3 reading sources... [ 84%] release_notes/release1.4 reading sources... [ 85%] release_notes/release1.4.1 reading sources... [ 86%] release_notes/release1.5 reading sources... [ 86%] release_notes/release1.6 reading sources... [ 87%] release_notes/release1.7 reading sources... [ 88%] release_notes/release1.8 reading sources... [ 88%] release_notes/release1.9 reading sources... [ 89%] stateoftheart reading sources... [ 90%] subscribe reading sources... [ 91%] theory/b_and_q reading sources... [ 91%] theory/bmatrix reading sources... [ 92%] theory/gqi reading sources... [ 93%] theory/index reading sources... [ 93%] theory/sh_basis reading sources... [ 94%] theory/spherical reading sources... [ 95%] user_guide/data reading sources... [ 96%] user_guide/dataset_list reading sources... [ 96%] user_guide/dependencies reading sources... [ 97%] user_guide/getting_started reading sources... [ 98%] user_guide/index reading sources... [ 99%] user_guide/installation reading sources... [ 99%] user_guide/introduction reading sources... [100%] user_guide/mission /build/reproducible-path/dipy-1.9.0/doc/api_changes.rst:30: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/api_changes.rst:33: WARNING: Block quote ends without a blank line; unexpected unindent. ../benchmarks/README.rst:18: WARNING: Title underline too short. Getting Started 🏃‍♂️ ------------------ ../benchmarks/README.rst:18: WARNING: Title underline too short. Getting Started 🏃‍♂️ ------------------ /build/reproducible-path/dipy-1.9.0/doc/devel/benchmarking.rst:: ERROR: Anonymous hyperlink mismatch: 1 references but 0 targets. See "backrefs" attribute for IDs. links_names.inc:80: WARNING: Duplicate explicit target name: "cython". /build/reproducible-path/dipy-1.9.0/doc/devel/make_release.rst:123: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/devel/toolchain.rst:39: WARNING: Mismatch: both interpreted text role prefix and reference suffix. /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:26: WARNING: image file not readable: images/spitfire_0.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:31: WARNING: image file not readable: images/spitfire_x.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:36: WARNING: image file not readable: images/spitfire_y.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:41: WARNING: image file not readable: images/spitfire_hoped.png /build/reproducible-path/dipy-1.9.0/doc/index.rst:99: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/index.rst:119: WARNING: toctree contains reference to nonexisting document 'examples_built/index' /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst:290: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:118: WARNING: duplicate citation Yeh18, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:128: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:52: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:113: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: WARNING: Substitution definition "image1" empty or invalid. .. |image1| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: WARNING: Substitution definition "image2" empty or invalid. .. |image2| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:142: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image1". /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image2". /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:106: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:163: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst:204: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:31: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:41: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:: ERROR: Anonymous hyperlink mismatch: 1 references but 0 targets. See "backrefs" attribute for IDs. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:39::1: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:73::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.align.VerbosityLevels: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public.write_mapping:7: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align._public._METHOD_DICT: {'center_of_mass': (functools.partial(, pipeline=['center_of_mass']), None), 'translation': (functools.partial(, pipeline=['translation']), ), 'rigid_isoscaling': (functools.partial(, pipeline=['rigid_isoscaling']), ), 'rigid_scaling': (functools.partial(, pipeline=['rigid_scaling']), ), 'rigid': (functools.partial(, pipeline=['rigid']), ), 'affine': (functools.partial(, pipeline=['affine']), )} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform_inverse:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineRegistration.optimize:38: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imaffine._transform_method: {(2, 'nearest'): , (3, 'nearest'): , (2, 'linear'): , (3, 'linear'): } is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imwarp.py:docstring of dipy.align.imwarp.SymmetricDiffeomorphicRegistration.update:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imwarp.RegistrationStages: is not a callable object WARNING: Failed to get a function signature for dipy.align.imwarp.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/metrics.py:docstring of dipy.align.metrics.v_cycle_3d:9: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align.scalespace.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:50: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:51: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: Duplicate explicit target name: "garyfallidis14". WARNING: Failed to get a function signature for dipy.align.streamlinear.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:18: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:66: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:68: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:44: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:47: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:49: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp_vector_filed:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:66: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.bundle_min_distance_fast:32: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:28: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:47: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.BundleMinDistanceMetric:12: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:75: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:82: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp:49: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.core.rst:42::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.core.geometry._TUPLE2AXES: {(0, 0, 0, 0): 'sxyz', (0, 0, 1, 0): 'sxyx', (0, 1, 0, 0): 'sxzy', (0, 1, 1, 0): 'sxzx', (1, 0, 0, 0): 'syzx', (1, 0, 1, 0): 'syzy', (1, 1, 0, 0): 'syxz', (1, 1, 1, 0): 'syxy', (2, 0, 0, 0): 'szxy', (2, 0, 1, 0): 'szxz', (2, 1, 0, 0): 'szyx', (2, 1, 1, 0): 'szyz', (0, 0, 0, 1): 'rzyx', (0, 0, 1, 1): 'rxyx', (0, 1, 0, 1): 'ryzx', (0, 1, 1, 1): 'rxzx', (1, 0, 0, 1): 'rxzy', (1, 0, 1, 1): 'ryzy', (1, 1, 0, 1): 'rzxy', (1, 1, 1, 1): 'ryxy', (2, 0, 0, 1): 'ryxz', (2, 0, 1, 1): 'rzxz', (2, 1, 0, 1): 'rxyz', (2, 1, 1, 1): 'rzyz'} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:34: WARNING: Bullet list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.gradients.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.gradient_table_from_bvals_bvecs:40: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.reorient_bvecs:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:61: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:69: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:88: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_vertices: array([[ 1., 0., 0.], [-1., 0., 0.], [ 0., 1., 0.], [ 0., -1., 0.], [ 0., 0., 1.], [ 0., 0., -1.]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_faces: array([[0, 4, 2], [1, 5, 3], [4, 2, 1], [5, 3, 0], [1, 4, 3], [0, 5, 2], [0, 4, 3], [1, 5, 2]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_vertices: array([[ 0.85065081, 0.52573111, 0. ], [-0.85065081, 0.52573111, 0. ], [ 0.85065081, -0.52573111, 0. ], [-0.85065081, -0.52573111, 0. ], [ 0.52573111, 0. , 0.85065081], [ 0.52573111, 0. , -0.85065081], [-0.52573111, 0. , 0.85065081], [-0.52573111, 0. , -0.85065081], [ 0. , 0.85065081, 0.52573111], [ 0. , -0.85065081, 0.52573111], [ 0. , 0.85065081, -0.52573111], [ 0. , -0.85065081, -0.52573111]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_faces: array([[ 8, 4, 0], [ 2, 5, 0], [ 2, 5, 11], [ 9, 2, 11], [ 2, 4, 0], [ 9, 2, 4], [10, 8, 1], [10, 8, 0], [10, 5, 0], [ 6, 3, 1], [ 9, 6, 3], [ 6, 8, 1], [ 6, 8, 4], [ 9, 6, 4], [ 7, 10, 1], [ 7, 10, 5], [ 7, 3, 1], [ 7, 3, 11], [ 9, 3, 11], [ 7, 5, 11]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.unit_octahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.unit_icosahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.hemi_icosahedron: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.PositiveDefiniteLeastSquares.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. WARNING: Failed to get a function signature for dipy.data.DATA_DIR: '/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/files' is not a callable object WARNING: Failed to get a function signature for dipy.data.default_sphere: is not a callable object WARNING: Failed to get a function signature for dipy.data.small_sphere: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_data:15: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher._make_fetcher..fetcher:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_qtdMRI_test_retest_2subjects:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:39: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:28::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/__init__.py:docstring of dipy.data.load_sdp_constraints:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:38: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:40: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:12: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:56: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:63: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:67: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:44: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:56: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:57: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:61: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:62: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:38: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:39: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: Duplicate explicit target name: "coupe11". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:30: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:27: WARNING: duplicate citation Coupe08, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:10: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:44: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:47: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:22: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/stateful_tractogram.py:docstring of dipy.io.stateful_tractogram.StatefulTractogram.from_sft:18: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.io.stateful_tractogram.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.load_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.save_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.nifti1_symmat:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:6: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.get_reference_info:8: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.deepn4.logger: is not a callable object WARNING: Failed to get a function signature for dipy.nn.evac.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/histo_resdnn.py:docstring of dipy.nn.histo_resdnn.HistoResDNN.__init__:29: WARNING: Duplicate explicit target name: "1". WARNING: Failed to get a function signature for dipy.nn.histo_resdnn.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.predict:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.synb0.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:19: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.kfold_xval:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:24: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:48: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:53: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:20: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:30: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:46: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.estimate_response:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:35: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:41: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:9: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.__init__:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.predict:11: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.multi_gaussian_k_from_c:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.split_cti_params:15: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.ls_fit_cti:26: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:17: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:9: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:16: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:43: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:67: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:73: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.carlson_rf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:41: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:45: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:71: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:74: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:77: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:58: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:61: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:49: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:19: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:28: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:35: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.split_dki_param:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:27: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:32: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:25: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qspace:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qtable:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.hanning_filter:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:9: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:15: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_indices: array([[0, 1, 3], [1, 2, 4], [3, 4, 5]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_rows: array([0, 1, 1, 2, 2, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_cols: array([0, 0, 1, 0, 1, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.quantize_evecs:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:17: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:21: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:23: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:16: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:78: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:17: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:37: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:24: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:28: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:94: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:98: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:103: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:107: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:111: WARNING: Duplicate explicit target name: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:115: WARNING: Duplicate explicit target name: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:11: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:9: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:18: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:23: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:30: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:47: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_shell_fiber_response:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msd:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msk:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:21: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:19: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:23: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:22: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part1_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.generalized_crossvalidation:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.GCV_cost_function:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_number_of_coefficients:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:23: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:68: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:77: WARNING: Duplicate explicit target name: "2". WARNING: Failed to get a function signature for dipy.reconst.rumba.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:36: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: Duplicate explicit target name: "rokem2015". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.CsaOdfModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:9: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.QballModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_rh:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:17: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:38: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:42: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:36: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:40: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:46: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.anisotropic_power:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/utils.py:docstring of dipy.reconst.utils.dki_design_matrix:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:40: WARNING: Footnote [7] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:43: WARNING: Footnote [8] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:47: WARNING: Footnote [9] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.gen_dirac:20: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: duplicate citation Rokem2015, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:240::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:481::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:29: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:30: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:26: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.forward_sdt_deconv_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.csdeconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:24: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:30: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:22: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:6: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:38: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:20: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:43: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:37: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.msd_discrete:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:7: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.fwdti_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:4: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:50: ERROR: Duplicate target name, cannot be used as a unique reference: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation_array:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:11: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:13: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/odf.py:docstring of dipy.reconst.odf.gfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriModel:1: ERROR: Unknown target name: "n". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1966: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1981: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1991: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_eap_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1996: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_eap_matrix". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:14: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.mbessel_ratio:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:14: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.evaluate_results:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:23: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:55: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:56: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:25: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:27: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:58: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:59: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:86: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.segment.bundles.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.Cluster.assign:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.add_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.remove_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: Duplicate explicit target name: "garyfallidis12". WARNING: Failed to get a function signature for dipy.segment.clustering.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: Duplicate explicit target name: "garyfallidis16". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: Duplicate explicit target name: "stonge2022". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/mask.py:docstring of dipy.segment.mask.median_otsu:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.__init__:38: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_adjacency:22: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: duplicate citation Garyfallidis16, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: duplicate citation StOnge2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst WARNING: Failed to get a function signature for dipy.sims.voxel.diffusion_evals: array([0.0015, 0.0004, 0.0004]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.sticks_and_ball:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:40: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.dki_signal:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_odf:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_rtop:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_rtop:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_msd:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_msd:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:22: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:21: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/tracking/utils.py:docstring of dipy.tracking.utils.transform_tracking_output:13: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: Duplicate explicit target name: "horizon_ismrm19". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/tab/base.py:docstring of dipy.viz.horizon.tab.base.HorizonTab.register_elements:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.is_binary_image:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/visualizer/peak.py:docstring of dipy.viz.horizon.visualizer.peak.PeakActor:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_images:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_2d_diffeomorphic_map:48: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_slices:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_slices:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser:17: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:33: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:54: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:61: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ImageRegistrationFlow.run:29: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ApplyTransformFlow.run:11: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:29: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:53: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:36: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:30: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:2: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/nn.py:docstring of dipy.workflows.nn.EVACPlusFlow.run:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:77: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:85: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSDFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSAFlow.run:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:75: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:106: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:59: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:11: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:25: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:30: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:88: WARNING: Footnote [4] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:17: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:53: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:57: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:60: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.BundleWarpFlow.run:47: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:28: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:44: WARNING: duplicate citation Stejskal65, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:50: WARNING: duplicate citation LeBihan84, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:58: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.stats.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:15: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:41: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:19: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst:640: ERROR: Duplicate target name, cannot be used as a unique reference: "io_iterator". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:27: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:30: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:34: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:35: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_apply_transform.rst:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:37: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:25: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:39: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:56: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:48: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:45: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:24: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:26: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:41: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:42: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:50: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:49: WARNING: duplicate citation Fadnavis20, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:37: WARNING: duplicate citation Park2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:57: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:39: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:43: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:44: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:66: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:65: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:34: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:64: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:61: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:62: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:64: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:59: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:60: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:61: WARNING: Footnote [3] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:62: WARNING: Footnote [4] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:53: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:51: WARNING: duplicate citation Stejskal65, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:52: WARNING: duplicate citation LeBihan84, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_mapmri.rst:39: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_mapmri.rst:41: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:38: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:39: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:45: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:47: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:51: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:53: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:54: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:70: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:69: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst:36: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst:35: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_median_otsu.rst:31: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:70: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:68: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:69: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:33: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:61: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:33: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:58: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:59: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:60: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_snr_in_cc.rst:27: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_split.rst:22: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:46: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:81: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:82: WARNING: Inline emphasis start-string without end-string. looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/dipy-1.9.0/doc/devel/gitwash/dot2_dot3.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/developers.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/recipes.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/subscribe.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/theory/b_and_q.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/theory/bmatrix.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/theory/gqi.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:42: WARNING: Citation [Descoteaux08] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:69: WARNING: Citation [Chandio2020] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst:35: WARNING: Citation [Garyfallidis16] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:69: WARNING: Citation [Horizon_ISMRM19] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:49: WARNING: Citation [Fadnavis20] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:37: WARNING: Citation [Park2022] is not referenced. done preparing documents... WARNING: unsupported theme option 'switcher' given WARNING: unsupported theme option 'check_switcher' given WARNING: unsupported theme option 'show_version_warning_banner' given WARNING: unsupported theme option 'navbar_end' given WARNING: unsupported theme option 'secondary_sidebar_items' given WARNING: unsupported theme option 'show_toc_level' given WARNING: unsupported theme option 'navbar_center' given WARNING: unsupported theme option 'navbar_links' given WARNING: unsupported theme option 'navbar_persistent' given WARNING: unsupported theme option 'icon_links' given WARNING: unsupported theme option 'logo' given WARNING: unsupported theme option 'footer_start' given WARNING: unsupported theme option 'footer_signup_data' given WARNING: unsupported theme option 'footer_end' given WARNING: unsupported theme option 'footer_links' given WARNING: unsupported theme option 'footer_copyright' given WARNING: unsupported theme option 'analytics' given done copying assets... copying static files... done copying extra files... done copying assets: done writing output... [ 1%] api_changes writing output... [ 1%] cite writing output... [ 2%] devel/benchmarking writing output... [ 3%] devel/coding_style_guideline writing output... [ 4%] devel/commit_codes writing output... [ 4%] devel/gitwash/configure_git writing output... [ 5%] devel/gitwash/development_workflow writing output... [ 6%] devel/gitwash/dot2_dot3 writing output... [ 7%] devel/gitwash/following_latest writing output... [ 7%] devel/gitwash/forking_hell writing output... [ 8%] devel/gitwash/git_development writing output... [ 9%] devel/gitwash/git_install writing output... [ 9%] devel/gitwash/git_intro writing output... [ 10%] devel/gitwash/git_resources writing output... [ 11%] devel/gitwash/index writing output... [ 12%] devel/gitwash/maintainer_workflow writing output... [ 12%] devel/gitwash/patching writing output... [ 13%] devel/gitwash/set_up_fork writing output... [ 14%] devel/index writing output... [ 14%] devel/installation_from_source writing output... [ 15%] devel/intro writing output... [ 16%] devel/make_release writing output... [ 17%] devel/toolchain writing output... [ 17%] developers writing output... [ 18%] faq writing output... [ 19%] gimbal_lock writing output... [ 20%] glossary writing output... [ 20%] index writing output... [ 21%] interfaces/basic_flow writing output... [ 22%] interfaces/buan_flow writing output... [ 22%] interfaces/bundle_segmentation_flow writing output... [ 23%] interfaces/bundlewarp_registration_flow writing output... [ 24%] interfaces/data_fetch writing output... [ 25%] interfaces/denoise_flow writing output... [ 25%] interfaces/gibbs_unringing_flow writing output... [ 26%] interfaces/index writing output... [ 27%] interfaces/motion_flow writing output... [ 28%] interfaces/reconstruction_flow writing output... [ 28%] interfaces/registration_flow writing output... [ 29%] interfaces/tracking_flow writing output... [ 30%] old_highlights writing output... [ 30%] old_news writing output... [ 31%] recipes writing output... [ 32%] reconstruction_models_list writing output... [ 33%] reference/dipy writing output... [ 33%] reference/dipy.align writing output... [ 34%] reference/dipy.core writing output... [ 35%] reference/dipy.data writing output... [ 36%] reference/dipy.denoise writing output... [ 36%] reference/dipy.direction writing output... [ 37%] reference/dipy.io writing output... [ 38%] reference/dipy.nn writing output... [ 38%] reference/dipy.reconst writing output... [ 39%] reference/dipy.segment writing output... [ 40%] reference/dipy.sims writing output... [ 41%] reference/dipy.stats writing output... [ 41%] reference/dipy.tracking writing output... [ 42%] reference/dipy.version writing output... [ 43%] reference/dipy.viz writing output... [ 43%] reference/dipy.workflows writing output... [ 44%] reference/index writing output... [ 45%] reference_cmd/dipy_align_affine writing output... [ 46%] reference_cmd/dipy_align_syn writing output... [ 46%] reference_cmd/dipy_apply_transform writing output... [ 47%] reference_cmd/dipy_buan_lmm writing output... [ 48%] reference_cmd/dipy_buan_profiles writing output... [ 49%] reference_cmd/dipy_buan_shapes writing output... [ 49%] reference_cmd/dipy_bundlewarp writing output... [ 50%] reference_cmd/dipy_concatenate_tractograms writing output... [ 51%] reference_cmd/dipy_convert_tensors writing output... [ 51%] reference_cmd/dipy_convert_tractogram writing output... [ 52%] reference_cmd/dipy_correct_motion writing output... [ 53%] reference_cmd/dipy_denoise_lpca writing output... [ 54%] reference_cmd/dipy_denoise_mppca writing output... [ 54%] reference_cmd/dipy_denoise_nlmeans writing output... [ 55%] reference_cmd/dipy_denoise_patch2self writing output... [ 56%] reference_cmd/dipy_evac_plus writing output... [ 57%] reference_cmd/dipy_fetch writing output... [ 57%] reference_cmd/dipy_fit_csa writing output... [ 58%] reference_cmd/dipy_fit_csd writing output... [ 59%] reference_cmd/dipy_fit_dki writing output... [ 59%] reference_cmd/dipy_fit_dsi writing output... [ 60%] reference_cmd/dipy_fit_dti writing output... [ 61%] reference_cmd/dipy_fit_ivim writing output... [ 62%] reference_cmd/dipy_fit_mapmri writing output... [ 62%] reference_cmd/dipy_gibbs_ringing writing output... [ 63%] reference_cmd/dipy_horizon writing output... [ 64%] reference_cmd/dipy_info writing output... [ 64%] reference_cmd/dipy_labelsbundles writing output... [ 65%] reference_cmd/dipy_mask writing output... [ 66%] reference_cmd/dipy_median_otsu writing output... [ 67%] reference_cmd/dipy_recobundles writing output... [ 67%] reference_cmd/dipy_reslice writing output... [ 68%] reference_cmd/dipy_sh_convert_mrtrix writing output... [ 69%] reference_cmd/dipy_slr writing output... [ 70%] reference_cmd/dipy_snr_in_cc writing output... [ 70%] reference_cmd/dipy_split writing output... [ 71%] reference_cmd/dipy_track writing output... [ 72%] reference_cmd/dipy_track_pft writing output... [ 72%] reference_cmd/index writing output... [ 73%] release_notes/release0.10 writing output... [ 74%] release_notes/release0.11 writing output... [ 75%] release_notes/release0.12 writing output... [ 75%] release_notes/release0.13 writing output... [ 76%] release_notes/release0.14 writing output... [ 77%] release_notes/release0.15 writing output... [ 78%] release_notes/release0.16 writing output... [ 78%] release_notes/release0.6 writing output... [ 79%] release_notes/release0.7 writing output... [ 80%] release_notes/release0.8 writing output... [ 80%] release_notes/release0.9 writing output... [ 81%] release_notes/release1.0 writing output... [ 82%] release_notes/release1.1 writing output... [ 83%] release_notes/release1.2 writing output... [ 83%] release_notes/release1.3 writing output... [ 84%] release_notes/release1.4 writing output... [ 85%] release_notes/release1.4.1 writing output... [ 86%] release_notes/release1.5 writing output... [ 86%] release_notes/release1.6 writing output... [ 87%] release_notes/release1.7 writing output... [ 88%] release_notes/release1.8 writing output... [ 88%] release_notes/release1.9 writing output... [ 89%] stateoftheart writing output... [ 90%] subscribe writing output... [ 91%] theory/b_and_q writing output... [ 91%] theory/bmatrix writing output... [ 92%] theory/gqi writing output... [ 93%] theory/index writing output... [ 93%] theory/sh_basis writing output... [ 94%] theory/spherical writing output... [ 95%] user_guide/data writing output... [ 96%] user_guide/dataset_list writing output... [ 96%] user_guide/dependencies writing output... [ 97%] user_guide/getting_started writing output... [ 98%] user_guide/index writing output... [ 99%] user_guide/installation writing output... [ 99%] user_guide/introduction writing output... [100%] user_guide/mission /build/reproducible-path/dipy-1.9.0/doc/index.rst:31: WARNING: 'any' reference target not found: examples_built/index /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:32: WARNING: citation not found: Chandio23 /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:104: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:104: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_original.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:107: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:107: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_denoise_MPPCA.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:150: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:150: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/cfin_multib_original.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:153: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:153: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_NLMEANS.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:296: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:299: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_news.rst:37: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:15: WARNING: undefined label: 'sphx_glr_examples_built_file_formats_streamline_formats.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:11: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:17: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_restore_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:23: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_fwdti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:29: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:35: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:41: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki_micro.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:47: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_msdki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:53: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csa.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:65: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_ivim.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:71: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_ivim.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:83: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dsi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:89: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dsid.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:95: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_gqi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:101: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_sfm.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:107: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csa.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:113: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_shore.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:119: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:125: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:137: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:143: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mcsd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:149: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_forecast.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:155: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_rumba.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:161: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:167: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtiplus.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:179: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtdmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:191: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_msdki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:197: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_cti.py' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_iter:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_fit_tensor:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:7: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:24: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/getting_started.rst:41: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/introduction.rst:11: WARNING: undefined label: 'examples' generating indices... genindex py-modindex done writing additional pages... search done copying images... [ 17%] devel/gitwash/branch_dropdown.png copying images... [ 33%] devel/gitwash/collaborators.png copying images... [ 50%] devel/gitwash/forking_button.png copying images... [ 67%] theory/spherical_coordinates.png copying images... [ 83%] _static/colorfa.png copying images... [100%] _static/pretty_tracks.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1320 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' # references to cloudflare and github are privacy breaches sed 's@https://cdnjs\.cloudflare\.com/ajax/libs/mathjax/[^/]\+/@file:///usr/share/javascript/mathjax/unpacked/@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/theory/*.html sed 's@https://cdn\.jsdelivr\.net/npm/mathjax[@]3/es5/tex-mml-chtml\.js@file:///usr/share/nodejs/mathjax-full/es5/tex-mml-chtml.js@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/reference/*.html \ doc/_build/html/theory/*.html # FIXME: references to github are for images part of dipy_data, which # is not available in debian; these may need packaging to solve the # privacy breach here. # Run tests later on # cd build to prevent use of local/not-built source tree set -ex \ ; for PYTHON in 3.12 \ ; do PYPKG="/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python$PYTHON/dist-packages" \ ; export PYTHONPATH="$PYPKG" \ ; echo "I: Running Dipy unittests using $PYTHON" \ ; cd "$PYPKG" \ ; PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:$PATH \ xvfb-run -a -s "-screen 0 1280x1024x24 -noreset" \ python$PYTHON -m pytest -v -k 'not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py' dipy \ ; rm .pytest_cache -rf \ ; done + PYPKG=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + export PYTHONPATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + echo I: Running Dipy unittests using 3.12 I: Running Dipy unittests using 3.12 + cd /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games xvfb-run -a -s -screen 0 1280x1024x24 -noreset python3.12 -m pytest -v -k not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py dipy ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/dipy-1.9.0 configfile: pyproject.toml plugins: typeguard-4.4.1 collecting ... collected 1000 items / 9 deselected / 991 selected dipy/align/tests/test_api.py::test_syn_registration SKIPPED (test ne...) [ 0%] dipy/align/tests/test_api.py::test_register_dwi_to_template SKIPPED [ 0%] dipy/align/tests/test_api.py::test_affine_registration SKIPPED (test...) [ 0%] dipy/align/tests/test_api.py::test_single_transforms SKIPPED (test n...) [ 0%] dipy/align/tests/test_api.py::test_register_series SKIPPED (test nee...) [ 0%] dipy/align/tests/test_api.py::test_register_dwi_series_and_motion_correction SKIPPED [ 0%] dipy/align/tests/test_api.py::test_streamline_registration SKIPPED (...) [ 0%] dipy/align/tests/test_api.py::test_register_dwi_series_multi_b0 SKIPPED [ 0%] dipy/align/tests/test_crosscorr.py::test_cc_factors_2d PASSED [ 0%] dipy/align/tests/test_crosscorr.py::test_cc_factors_3d PASSED [ 1%] dipy/align/tests/test_crosscorr.py::test_compute_cc_steps_2d PASSED [ 1%] dipy/align/tests/test_crosscorr.py::test_compute_cc_steps_3d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_compute_em_demons_step_2d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_compute_em_demons_step_3d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_quantize_positive_2d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_quantize_positive_3d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_compute_masked_class_stats_2d PASSED [ 1%] dipy/align/tests/test_expectmax.py::test_compute_masked_class_stats_3d PASSED [ 1%] dipy/align/tests/test_imaffine.py::test_transform_centers_of_mass_3d PASSED [ 1%] dipy/align/tests/test_imaffine.py::test_transform_geometric_centers_3d PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_transform_origins_3d PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_affreg_all_transforms PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_affreg_defaults PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_mi_gradient PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_affine_map PASSED [ 2%] dipy/align/tests/test_imaffine.py::test_MIMetric_invalid_params PASSED [ 2%] dipy/align/tests/test_imwarp.py::test_mult_aff PASSED [ 2%] dipy/align/tests/test_imwarp.py::test_diffeomorphic_map_2d PASSED [ 2%] dipy/align/tests/test_imwarp.py::test_diffeomorphic_map_simplification_2d PASSED [ 2%] dipy/align/tests/test_imwarp.py::test_diffeomorphic_map_simplification_3d PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_optimizer_exceptions PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_get_direction_and_spacings PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_ssd_2d_demons PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_ssd_2d_gauss_newton PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_ssd_3d_demons PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_ssd_3d_gauss_newton PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_cc_2d PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_cc_3d PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_em_3d_gauss_newton PASSED [ 3%] dipy/align/tests/test_imwarp.py::test_em_2d_gauss_newton PASSED [ 4%] dipy/align/tests/test_imwarp.py::test_em_3d_demons PASSED [ 4%] dipy/align/tests/test_imwarp.py::test_em_2d_demons PASSED [ 4%] dipy/align/tests/test_imwarp.py::test_coordinate_mapping PASSED [ 4%] dipy/align/tests/test_metrics.py::test_exceptions PASSED [ 4%] dipy/align/tests/test_metrics.py::test_EMMetric_image_dynamics PASSED [ 4%] dipy/align/tests/test_metrics.py::test_em_demons_step_2d PASSED [ 4%] dipy/align/tests/test_metrics.py::test_em_demons_step_3d PASSED [ 4%] dipy/align/tests/test_parzenhist.py::test_cubic_spline PASSED [ 4%] dipy/align/tests/test_parzenhist.py::test_cubic_spline_derivative PASSED [ 4%] dipy/align/tests/test_parzenhist.py::test_parzen_joint_histogram PASSED [ 5%] dipy/align/tests/test_parzenhist.py::test_parzen_densities PASSED [ 5%] dipy/align/tests/test_parzenhist.py::test_joint_pdf_gradients_dense PASSED [ 5%] dipy/align/tests/test_parzenhist.py::test_joint_pdf_gradients_sparse PASSED [ 5%] dipy/align/tests/test_parzenhist.py::test_sample_domain_regular PASSED [ 5%] dipy/align/tests/test_parzenhist.py::test_exceptions PASSED [ 5%] dipy/align/tests/test_reslice.py::test_resample PASSED [ 5%] dipy/align/tests/test_scalespace.py::test_scale_space PASSED [ 5%] dipy/align/tests/test_scalespace.py::test_scale_space_exceptions PASSED [ 5%] dipy/align/tests/test_streamlinear.py::test_rigid_parallel_lines PASSED [ 5%] dipy/align/tests/test_streamlinear.py::test_rigid_real_bundles PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_rigid_partial_real_bundles PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_stream_rigid PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_min_vs_min_fast_precision PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_same_number_of_points PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_efficient_bmd PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_openmp_locks PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_from_to_rigid PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_matrix44 PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_abstract_metric_class PASSED [ 6%] dipy/align/tests/test_streamlinear.py::test_evolution_of_previous_iterations PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_similarity_real_bundles PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_affine_real_bundles PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_vectorize_streamlines PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_x0_input PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_compose_decompose_matrix44 PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_cascade_of_optimizations_and_threading PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_wrong_num_threads PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_get_unique_pairs PASSED [ 7%] dipy/align/tests/test_streamlinear.py::test_groupwise_slr PASSED [ 7%] dipy/align/tests/test_streamwarp.py::test_bundlewarp PASSED [ 8%] dipy/align/tests/test_streamwarp.py::test_bundlewarp_vector_filed PASSED [ 8%] dipy/align/tests/test_streamwarp.py::test_bundle_shape_profile PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_residual_displacement_field_ssd_2d PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_residual_displacement_field_ssd_3d PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_solve_2d_symmetric_positive_definite PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_solve_3d_symmetric_positive_definite PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_energy_ssd_2d PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_energy_ssd_3d PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_ssd_demons_step_2d PASSED [ 8%] dipy/align/tests/test_sumsqdiff.py::test_compute_ssd_demons_step_3d PASSED [ 9%] dipy/align/tests/test_transforms.py::test_number_of_parameters PASSED [ 9%] dipy/align/tests/test_transforms.py::test_param_to_matrix_2d PASSED [ 9%] dipy/align/tests/test_transforms.py::test_param_to_matrix_3d PASSED [ 9%] dipy/align/tests/test_transforms.py::test_identity_parameters PASSED [ 9%] dipy/align/tests/test_transforms.py::test_jacobian_functions PASSED [ 9%] dipy/align/tests/test_transforms.py::test_invalid_transform PASSED [ 9%] dipy/align/tests/test_vector_fields.py::test_random_displacement_field_2d PASSED [ 9%] dipy/align/tests/test_vector_fields.py::test_random_displacement_field_3d PASSED [ 9%] dipy/align/tests/test_vector_fields.py::test_harmonic_fields_2d PASSED [ 9%] dipy/align/tests/test_vector_fields.py::test_harmonic_fields_3d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_circle PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_sphere PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_warping_2d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_warping_3d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_affine_transforms_2d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_affine_transforms_3d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_compose_vector_fields_2d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_compose_vector_fields_3d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_invert_vector_field_2d PASSED [ 10%] dipy/align/tests/test_vector_fields.py::test_invert_vector_field_3d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_resample_vector_field_2d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_resample_vector_field_3d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_downsample_scalar_field_2d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_downsample_displacement_field_2d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_downsample_scalar_field_3d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_downsample_displacement_field_3d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_reorient_vector_field_2d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_reorient_vector_field_3d PASSED [ 11%] dipy/align/tests/test_vector_fields.py::test_reorient_random_vector_fields PASSED [ 12%] dipy/align/tests/test_vector_fields.py::test_gradient_2d PASSED [ 12%] dipy/align/tests/test_vector_fields.py::test_gradient_3d PASSED [ 12%] dipy/align/tests/test_whole_brain_slr.py::test_whole_brain_slr PASSED [ 12%] dipy/align/tests/test_whole_brain_slr.py::test_slr_one_streamline PASSED [ 12%] dipy/core/tests/test_geometry.py::test_vector_norm PASSED [ 12%] dipy/core/tests/test_geometry.py::test_sphere_cart PASSED [ 12%] dipy/core/tests/test_geometry.py::test_invert_transform PASSED [ 12%] dipy/core/tests/test_geometry.py::test_nearest_pos_semi_def PASSED [ 12%] dipy/core/tests/test_geometry.py::test_cart_distance PASSED [ 12%] dipy/core/tests/test_geometry.py::test_sphere_distance PASSED [ 13%] dipy/core/tests/test_geometry.py::test_vector_cosine PASSED [ 13%] dipy/core/tests/test_geometry.py::test_lambert_equal_area_projection_polar PASSED [ 13%] dipy/core/tests/test_geometry.py::test_lambert_equal_area_projection_cart PASSED [ 13%] dipy/core/tests/test_geometry.py::test_circumradius PASSED [ 13%] dipy/core/tests/test_geometry.py::test_vec2vec_rotmat PASSED [ 13%] dipy/core/tests/test_geometry.py::test_compose_transformations PASSED [ 13%] dipy/core/tests/test_geometry.py::test_compose_decompose_matrix PASSED [ 13%] dipy/core/tests/test_geometry.py::test_perpendicular_directions PASSED [ 13%] dipy/core/tests/test_geometry.py::test_dist_to_corner PASSED [ 13%] dipy/core/tests/test_geometry.py::test_is_hemispherical PASSED [ 14%] dipy/core/tests/test_gradients.py::test_unique_bvals_deprecated PASSED [ 14%] dipy/core/tests/test_gradients.py::test_mask_non_weighted_bvals PASSED [ 14%] dipy/core/tests/test_gradients.py::test_btable_prepare PASSED [ 14%] dipy/core/tests/test_gradients.py::test_GradientTable PASSED [ 14%] dipy/core/tests/test_gradients.py::test_GradientTable_btensor_calculation PASSED [ 14%] dipy/core/tests/test_gradients.py::test_gradient_table_from_qvals_bvecs PASSED [ 14%] dipy/core/tests/test_gradients.py::test_gradient_table_from_gradient_strength_bvecs PASSED [ 14%] dipy/core/tests/test_gradients.py::test_gradient_table_from_bvals_bvecs PASSED [ 14%] dipy/core/tests/test_gradients.py::test_gradient_table_special_bvals_bvecs_case PASSED [ 14%] dipy/core/tests/test_gradients.py::test_b0s PASSED [ 15%] dipy/core/tests/test_gradients.py::test_gtable_from_files PASSED [ 15%] dipy/core/tests/test_gradients.py::test_deltas PASSED [ 15%] dipy/core/tests/test_gradients.py::test_qvalues PASSED [ 15%] dipy/core/tests/test_gradients.py::test_reorient_bvecs PASSED [ 15%] dipy/core/tests/test_gradients.py::test_nan_bvecs PASSED [ 15%] dipy/core/tests/test_gradients.py::test_generate_bvecs PASSED [ 15%] dipy/core/tests/test_gradients.py::test_getitem_idx PASSED [ 15%] dipy/core/tests/test_gradients.py::test_round_bvals PASSED [ 15%] dipy/core/tests/test_gradients.py::test_unique_bvals_tolerance PASSED [ 15%] dipy/core/tests/test_gradients.py::test_get_bval_indices PASSED [ 16%] dipy/core/tests/test_gradients.py::test_unique_bvals_magnitude PASSED [ 16%] dipy/core/tests/test_gradients.py::test_check_multi_b PASSED [ 16%] dipy/core/tests/test_gradients.py::test_btens_to_params PASSED [ 16%] dipy/core/tests/test_gradients.py::test_params_to_btens PASSED [ 16%] dipy/core/tests/test_gradients.py::test_orientation_from_to_string PASSED [ 16%] dipy/core/tests/test_gradients.py::test_reorient_vectors PASSED [ 16%] dipy/core/tests/test_gradients.py::test_affine_input_change PASSED [ 16%] dipy/core/tests/test_graph.py::test_graph PASSED [ 16%] dipy/core/tests/test_interpolation.py::test_trilinear_interpolate PASSED [ 16%] dipy/core/tests/test_interpolation.py::test_interpolate_scalar_2d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interpolate_scalar_nn_2d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interpolate_scalar_nn_3d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interpolate_scalar_3d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interpolate_vector_3d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interpolate_vector_2d PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_NearestNeighborInterpolator PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_TriLinearInterpolator PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_trilinear_interp_cubic_voxels PASSED [ 17%] dipy/core/tests/test_interpolation.py::test_interp_rbf PASSED [ 17%] dipy/core/tests/test_ndindex.py::test_ndindex PASSED [ 18%] dipy/core/tests/test_ndindex.py::test_ndindex_0d PASSED [ 18%] dipy/core/tests/test_optimize.py::test_optimize_new_scipy PASSED [ 18%] dipy/core/tests/test_optimize.py::test_sklearn_linear_solver PASSED [ 18%] dipy/core/tests/test_optimize.py::test_nonnegativeleastsquares PASSED [ 18%] dipy/core/tests/test_optimize.py::test_spdot PASSED [ 18%] dipy/core/tests/test_optimize.py::test_sparse_nnls PASSED [ 18%] dipy/core/tests/test_rng.py::test_wichmann_hill2006 PASSED [ 18%] dipy/core/tests/test_rng.py::test_wichmann_hill1982 PASSED [ 18%] dipy/core/tests/test_rng.py::test_LEcuyer PASSED [ 18%] dipy/core/tests/test_sphere.py::test_sphere_construct_args PASSED [ 19%] dipy/core/tests/test_sphere.py::test_sphere_edges_faces PASSED [ 19%] dipy/core/tests/test_sphere.py::test_sphere_not_unit PASSED [ 19%] dipy/core/tests/test_sphere.py::test_bad_edges_faces PASSED [ 19%] dipy/core/tests/test_sphere.py::test_sphere_construct PASSED [ 19%] dipy/core/tests/test_sphere.py::test_unique_edges PASSED [ 19%] dipy/core/tests/test_sphere.py::test_unique_sets PASSED [ 19%] dipy/core/tests/test_sphere.py::test_faces_from_sphere_vertices SKIPPED [ 19%] dipy/core/tests/test_sphere.py::test_sphere_attrs PASSED [ 19%] dipy/core/tests/test_sphere.py::test_edges_faces SKIPPED (Requires S...) [ 19%] dipy/core/tests/test_sphere.py::test_sphere_subdivide SKIPPED (Requi...) [ 20%] dipy/core/tests/test_sphere.py::test_sphere_find_closest PASSED [ 20%] dipy/core/tests/test_sphere.py::test_hemisphere_find_closest PASSED [ 20%] dipy/core/tests/test_sphere.py::test_hemisphere_subdivide SKIPPED (R...) [ 20%] dipy/core/tests/test_sphere.py::test_hemisphere_constructor PASSED [ 20%] dipy/core/tests/test_sphere.py::test_mirror SKIPPED (Requires SCIPY....) [ 20%] dipy/core/tests/test_sphere.py::test_hemisphere_faces SKIPPED (Requi...) [ 20%] dipy/core/tests/test_sphere.py::test_get_force PASSED [ 20%] dipy/core/tests/test_sphere.py::test_disperse_charges PASSED [ 20%] dipy/core/tests/test_sphere.py::test_disperse_charges_alt PASSED [ 20%] dipy/core/tests/test_sphere.py::test_fibonacci_sphere PASSED [ 21%] dipy/core/tests/test_subdivide_octahedron.py::test_create_unit_sphere PASSED [ 21%] dipy/data/tests/test_data.py::test_sphere_dtypes PASSED [ 21%] dipy/data/tests/test_fetcher.py::test_check_md5 PASSED [ 21%] dipy/data/tests/test_fetcher.py::test_make_fetcher PASSED [ 21%] dipy/data/tests/test_fetcher.py::test_fetch_data SKIPPED (test skewe...) [ 21%] dipy/denoise/tests/test_ascm.py::test_ascm_static PASSED [ 21%] dipy/denoise/tests/test_ascm.py::test_ascm_random_noise PASSED [ 21%] dipy/denoise/tests/test_ascm.py::test_ascm_rmse_with_nlmeans PASSED [ 21%] dipy/denoise/tests/test_ascm.py::test_sharpness PASSED [ 21%] dipy/denoise/tests/test_ascm.py::test_ascm_accuracy PASSED [ 22%] dipy/denoise/tests/test_denoise.py::test_denoise PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_parallel PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_inplace PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_gibbs_2d PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_gibbs_3d PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_gibbs_4d PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_swapped_gibbs_2d PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_swapped_gibbs_3d PASSED [ 22%] dipy/denoise/tests/test_gibbs.py::test_swapped_gibbs_4d PASSED [ 23%] dipy/denoise/tests/test_gibbs.py::test_gibbs_errors PASSED [ 23%] dipy/denoise/tests/test_gibbs.py::test_gibbs_subfunction PASSED [ 23%] dipy/denoise/tests/test_gibbs.py::test_non_square_image PASSED [ 23%] dipy/denoise/tests/test_kernel.py::test_enhancement_kernel PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_static PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_random_noise PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_boundary_behaviour PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_rmse PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_sharpness PASSED [ 23%] dipy/denoise/tests/test_lpca.py::test_lpca_dtype PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_lpca_wrong PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_phantom PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_lpca_ill_conditioned PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_lpca_radius_wrong_shape PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_lpca_sigma_wrong_shape PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_lpca_no_gtab_no_sigma PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_pca_classifier PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_mppca_in_phantom PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_create_patch_radius_arr PASSED [ 24%] dipy/denoise/tests/test_lpca.py::test_compute_patch_size PASSED [ 25%] dipy/denoise/tests/test_lpca.py::test_compute_num_samples PASSED [ 25%] dipy/denoise/tests/test_lpca.py::test_compute_suggested_patch_radius PASSED [ 25%] dipy/denoise/tests/test_lpca.py::test_mppca_returned_sigma PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_padding PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_static PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_wrong PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_random_noise PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_boundary PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_4D_and_mask PASSED [ 25%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_dtype PASSED [ 26%] dipy/denoise/tests/test_nlmeans.py::test_nlmeans_4d_3dsigma_and_threads PASSED [ 26%] dipy/denoise/tests/test_noise_estimate.py::test_inv_nchi PASSED [ 26%] dipy/denoise/tests/test_noise_estimate.py::test_piesno PASSED [ 26%] dipy/denoise/tests/test_noise_estimate.py::test_piesno_type PASSED [ 26%] dipy/denoise/tests/test_noise_estimate.py::test_estimate_sigma PASSED [ 26%] dipy/denoise/tests/test_noise_estimate.py::test_pca_noise_estimate PASSED [ 26%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_static PASSED [ 26%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_random_noise PASSED [ 26%] dipy/denoise/tests/test_non_local_means.py::test_scalar_sigma PASSED [ 26%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_boundary PASSED [ 27%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_wrong PASSED [ 27%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_4D_and_mask PASSED [ 27%] dipy/denoise/tests/test_non_local_means.py::test_nlmeans_dtype PASSED [ 27%] dipy/denoise/tests/test_patch2self.py::test_patch2self_random_noise PASSED [ 27%] dipy/denoise/tests/test_patch2self.py::test_patch2self_boundary PASSED [ 27%] dipy/denoise/tests/test_patch2self.py::test_phantom PASSED [ 27%] dipy/direction/tests/test_bootstrap_direction_getter.py::test_bdg_initial_direction PASSED [ 27%] dipy/direction/tests/test_bootstrap_direction_getter.py::test_bdg_get_direction PASSED [ 27%] dipy/direction/tests/test_bootstrap_direction_getter.py::test_bdg_residual PASSED [ 27%] dipy/direction/tests/test_bootstrap_direction_getter.py::test_boot_pmf PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peak_directions_nl PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_OdfFit PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peak_directions PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peak_directions_thorough PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_difference_with_minmax PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_degenerate_cases PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peaksFromModel PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peaksFromModelParallel PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_peaks_shm_coeff PASSED [ 28%] dipy/direction/tests/test_peaks.py::test_reshape_peaks_for_visualization PASSED [ 29%] dipy/direction/tests/test_pmf.py::test_pmf_val PASSED [ 29%] dipy/direction/tests/test_pmf.py::test_pmf_from_sh PASSED [ 29%] dipy/direction/tests/test_pmf.py::test_pmf_from_array PASSED [ 29%] dipy/direction/tests/test_prob_direction_getter.py::test_ProbabilisticDirectionGetter PASSED [ 29%] dipy/direction/tests/test_prob_direction_getter.py::test_DeterministicMaximumDirectionGetter PASSED [ 29%] dipy/direction/tests/test_ptt_direction_getter.py::test_ptt_tracking SKIPPED [ 29%] dipy/direction/tests/test_ptt_direction_getter.py::test_PTTDirectionGetter PASSED [ 29%] dipy/io/tests/test_dpy.py::test_dpy PASSED [ 29%] dipy/io/tests/test_io.py::test_imports PASSED [ 29%] dipy/io/tests/test_io_gradients.py::test_read_bvals_bvecs PASSED [ 30%] dipy/io/tests/test_io_peaks.py::test_io_peaks PASSED [ 30%] dipy/io/tests/test_io_peaks.py::test_io_save_peaks_error PASSED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_direct_trx_loading SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_trk_equal_in_vox_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_tck_equal_in_vox_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_trx_equal_in_vox_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_fib_equal_in_vox_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_dpy_equal_in_vox_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_trk_equal_in_rasmm_space SKIPPED [ 30%] dipy/io/tests/test_stateful_tractogram.py::test_tck_equal_in_rasmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_trx_equal_in_rasmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_fib_equal_in_rasmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_dpy_equal_in_rasmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_trk_equal_in_voxmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_tck_equal_in_voxmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_trx_equal_in_voxmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_fib_equal_in_voxmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_dpy_equal_in_voxmm_space SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_switch_voxel_sizes_from_rasmm SKIPPED [ 31%] dipy/io/tests/test_stateful_tractogram.py::test_switch_voxel_sizes_from_voxmm SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_to_rasmm_equivalence SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_to_voxmm_equivalence SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_to_vox_equivalence SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_to_corner_equivalence SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_to_center_equivalence SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_empty_sft_case SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_trk_iterative_saving_loading SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_tck_iterative_saving_loading SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_trx_iterative_saving_loading SKIPPED [ 32%] dipy/io/tests/test_stateful_tractogram.py::test_fib_iterative_saving_loading SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_dpy_iterative_saving_loading SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_iterative_to_vox_transformation SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_iterative_to_voxmm_transformation SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_empty_space_change SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_empty_shift_change SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_empty_remove_invalid SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_shift_corner_from_rasmm SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_shift_corner_from_voxmm SKIPPED [ 33%] dipy/io/tests/test_stateful_tractogram.py::test_iterative_shift_corner SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_replace_streamlines SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_subsample_streamlines SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_reassign_both_data_sep_to_empty SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_reassign_both_data_sep SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_bounding_bbox_valid[Origin.NIFTI] SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_bounding_bbox_valid[Origin.TRACKVIS] SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_random_point_color SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_random_point_gray SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_random_streamline_color SKIPPED [ 34%] dipy/io/tests/test_stateful_tractogram.py::test_out_of_grid[100-True] SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_out_of_grid[-100-True] SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_out_of_grid[0-False] SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_data_per_point_consistency_addition SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_data_per_streamline_consistency_addition SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_space_consistency_addition SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_origin_consistency_addition SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_space_attributes_consistency_addition SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_equality SKIPPED ("T...) [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_basic_slicing SKIPPED [ 35%] dipy/io/tests/test_stateful_tractogram.py::test_space_side_effect_slicing SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_origin_side_effect_slicing SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_advanced_slicing SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_basic_addition SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_space_side_effect_addition SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_origin_side_effect_addition SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_invalid_streamlines SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_invalid_streamlines_epsilon SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_create_from_sft SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_init_dtype_dict_attributes SKIPPED [ 36%] dipy/io/tests/test_stateful_tractogram.py::test_set_dtype_dict_attributes SKIPPED [ 37%] dipy/io/tests/test_stateful_tractogram.py::test_set_partial_dtype_dict_attributes SKIPPED [ 37%] dipy/io/tests/test_stateful_tractogram.py::test_non_existing_dtype_dict_attributes SKIPPED [ 37%] dipy/io/tests/test_stateful_tractogram.py::test_from_sft_dtype_dict_attributes SKIPPED [ 37%] dipy/io/tests/test_stateful_tractogram.py::test_slicing_dtype_dict_attributes SKIPPED [ 37%] dipy/io/tests/test_streamline.py::test_io_trk SKIPPED ("Tests Data f...) [ 37%] dipy/io/tests/test_streamline.py::test_io_tck SKIPPED ("Tests Data f...) [ 37%] dipy/io/tests/test_streamline.py::test_io_trx SKIPPED ("Tests Data f...) [ 37%] dipy/io/tests/test_streamline.py::test_io_vtk SKIPPED (Requires FURY) [ 37%] dipy/io/tests/test_streamline.py::test_io_vtp SKIPPED (Requires FURY) [ 37%] dipy/io/tests/test_streamline.py::test_io_dpy SKIPPED ("Tests Data f...) [ 38%] dipy/io/tests/test_streamline.py::test_low_io_vtk SKIPPED (Requires ...) [ 38%] dipy/io/tests/test_streamline.py::test_io_trk_load SKIPPED ("Tests D...) [ 38%] dipy/io/tests/test_streamline.py::test_io_trk_save SKIPPED ("Tests D...) [ 38%] dipy/io/tests/test_utils.py::test_decfa SKIPPED ("Tests Data failed ...) [ 38%] dipy/io/tests/test_utils.py::test_reference_info_validity SKIPPED ("...) [ 38%] dipy/io/tests/test_utils.py::test_reference_trk_file_info_identical SKIPPED [ 38%] dipy/io/tests/test_utils.py::test_reference_trx_file_info_identical SKIPPED [ 38%] dipy/io/tests/test_utils.py::test_reference_obj_info_identical SKIPPED [ 38%] dipy/io/tests/test_utils.py::test_reference_header_info_identical SKIPPED [ 38%] dipy/io/tests/test_utils.py::test_all_zeros_affine SKIPPED ("Tests D...) [ 39%] dipy/io/tests/test_utils.py::test_read_img_arr_or_path SKIPPED ("Tes...) [ 39%] dipy/nn/tests/test_cnn_1denoiser.py::test_default_Cnn1DDenoiser_sequential SKIPPED [ 39%] dipy/nn/tests/test_cnn_1denoiser.py::test_default_Cnn1DDenoiser_flow SKIPPED [ 39%] dipy/nn/tests/test_deepn4.py::test_default_weights SKIPPED (Requires...) [ 39%] dipy/nn/tests/test_deepn4.py::test_default_weights_batch SKIPPED (Re...) [ 39%] dipy/nn/tests/test_evac.py::test_default_weights SKIPPED (Requires T...) [ 39%] dipy/nn/tests/test_evac.py::test_default_weights_batch SKIPPED (Requ...) [ 39%] dipy/nn/tests/test_evac.py::test_T1_error SKIPPED (Requires TensorFlow) [ 39%] dipy/nn/tests/test_histo_resdnn.py::test_default_weights SKIPPED (Re...) [ 39%] dipy/nn/tests/test_histo_resdnn.py::test_predict_shape_and_masking SKIPPED [ 40%] dipy/nn/tests/test_histo_resdnn.py::test_wrong_sh_order_weights SKIPPED [ 40%] dipy/nn/tests/test_histo_resdnn.py::test_wrong_sh_order_input SKIPPED [ 40%] dipy/nn/tests/test_synb0.py::test_default_weights SKIPPED (Requires ...) [ 40%] dipy/nn/tests/test_synb0.py::test_default_weights_batch SKIPPED (Req...) [ 40%] dipy/nn/tests/test_tf.py::test_default_mnist_sequential SKIPPED (Req...) [ 40%] dipy/nn/tests/test_tf.py::test_default_mnist_slp SKIPPED (Requires T...) [ 40%] dipy/nn/tests/test_tf.py::test_default_mnist_mlp SKIPPED (Requires T...) [ 40%] dipy/nn/tests/test_utils.py::test_norm PASSED [ 40%] dipy/nn/tests/test_utils.py::test_transform PASSED [ 40%] dipy/reconst/tests/test_cache.py::test_basic_cache PASSED [ 41%] dipy/reconst/tests/test_cross_validation.py::test_coeff_of_determination PASSED [ 41%] dipy/reconst/tests/test_cross_validation.py::test_dti_xval PASSED [ 41%] dipy/reconst/tests/test_cross_validation.py::test_csd_xval PASSED [ 41%] dipy/reconst/tests/test_cross_validation.py::test_no_predict PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_auto_response_deprecated PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_response_from_mask_deprecated PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_recursive_response_calibration PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_mask_for_response_ssst PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_mask_for_response_ssst_nvoxels PASSED [ 41%] dipy/reconst/tests/test_csdeconv.py::test_response_from_mask_ssst PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_auto_response_ssst PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_csdeconv PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_odfdeconv PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_odf_sh_to_sharp PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_forward_sdeconv_mat PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_r2_term_odf_sharp PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_csd_predict PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_csd_predict_multi PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_sphere_scaling_csdmodel PASSED [ 42%] dipy/reconst/tests/test_csdeconv.py::test_default_lambda_csdmodel PASSED [ 43%] dipy/reconst/tests/test_csdeconv.py::test_csd_superres PASSED [ 43%] dipy/reconst/tests/test_csdeconv.py::test_csd_convergence PASSED [ 43%] dipy/reconst/tests/test_cti.py::test_cti_prediction PASSED [ 43%] dipy/reconst/tests/test_cti.py::test_split_cti_param PASSED [ 43%] dipy/reconst/tests/test_cti.py::test_cti_fits PASSED [ 43%] dipy/reconst/tests/test_cti.py::test_cti_errors PASSED [ 43%] dipy/reconst/tests/test_cti.py::test_cti_design_matrix PASSED [ 43%] dipy/reconst/tests/test_dki.py::test_positive_evals PASSED [ 43%] dipy/reconst/tests/test_dki.py::test_split_dki_param PASSED [ 43%] dipy/reconst/tests/test_dki.py::test_dki_fits PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_apparent_kurtosis_coef PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_dki_predict PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_carlson_rf PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_carlson_rd PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_Wrotate_single_fiber PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_Wrotate_crossing_fibers PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_Wcons PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_spherical_dki_statistics PASSED [ 44%] dipy/reconst/tests/test_dki.py::test_compare_MK_method PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_single_voxel_DKI_stats PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_compare_RK_methods PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_MK_singularities PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_dki_errors PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_kurtosis_maximum PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_multi_voxel_kurtosis_maximum PASSED [ 45%] dipy/reconst/tests/test_dki.py::test_kurtosis_fa PASSED [ 45%] dipy/reconst/tests/test_dki_micro.py::test_single_fiber_model PASSED [ 45%] dipy/reconst/tests/test_dki_micro.py::test_wmti_model_multi_voxel PASSED [ 45%] dipy/reconst/tests/test_dki_micro.py::test_dki_micro_predict_single_voxel PASSED [ 46%] dipy/reconst/tests/test_dki_micro.py::test_dki_micro_predict_multi_voxel PASSED [ 46%] dipy/reconst/tests/test_dki_micro.py::test_dki_micro_awf_only PASSED [ 46%] dipy/reconst/tests/test_dsi.py::test_dsi PASSED [ 46%] dipy/reconst/tests/test_dsi.py::test_multivox_dsi PASSED [ 46%] dipy/reconst/tests/test_dsi.py::test_multib0_dsi PASSED [ 46%] dipy/reconst/tests/test_dsi_deconv.py::test_dsi PASSED [ 46%] dipy/reconst/tests/test_dsi_deconv.py::test_multivox_dsi PASSED [ 46%] dipy/reconst/tests/test_dsi_metrics.py::test_dsi_metrics PASSED [ 46%] dipy/reconst/tests/test_dti.py::test_roll_evals PASSED [ 46%] dipy/reconst/tests/test_dti.py::test_tensor_algebra PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_odf_with_zeros PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_tensor_model PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_indexing_on_tensor_fit PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_fa_of_zero PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_ga_of_zero PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_diffusivities PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_color_fa PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_wls_and_ls_fit PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_masked_array_with_tensor PASSED [ 47%] dipy/reconst/tests/test_dti.py::test_fit_method_error PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_lower_triangular PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_from_lower_triangular PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_all_constant PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_all_zeros PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_mask PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_nnls_jacobian_func PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_nlls_fit_tensor PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_restore PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_adc PASSED [ 48%] dipy/reconst/tests/test_dti.py::test_predict PASSED [ 49%] dipy/reconst/tests/test_dti.py::test_eig_from_lo_tri PASSED [ 49%] dipy/reconst/tests/test_dti.py::test_min_signal_alone PASSED [ 49%] dipy/reconst/tests/test_dti.py::test_decompose_tensor_nan PASSED [ 49%] dipy/reconst/tests/test_dti.py::test_design_matrix_lte PASSED [ 49%] dipy/reconst/tests/test_eudx_dg.py::test_EuDXDirectionGetter PASSED [ 49%] dipy/reconst/tests/test_forecast.py::test_forecast_positive_constrain SKIPPED [ 49%] dipy/reconst/tests/test_forecast.py::test_forecast_csd PASSED [ 49%] dipy/reconst/tests/test_forecast.py::test_forecast_odf PASSED [ 49%] dipy/reconst/tests/test_forecast.py::test_forecast_indices PASSED [ 49%] dipy/reconst/tests/test_forecast.py::test_forecast_predict PASSED [ 50%] dipy/reconst/tests/test_forecast.py::test_multivox_forecast PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_singlevoxel PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_precision PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_multi_voxel PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_predictions PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_errors PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_restore PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_cholesky_functions PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_fwdti_jac_multi_voxel PASSED [ 50%] dipy/reconst/tests/test_fwdti.py::test_standalone_functions PASSED [ 51%] dipy/reconst/tests/test_fwdti.py::test_md_regularization PASSED [ 51%] dipy/reconst/tests/test_fwdti.py::test_negative_s0 PASSED [ 51%] dipy/reconst/tests/test_gqi.py::test_gqi PASSED [ 51%] dipy/reconst/tests/test_gqi.py::test_mvoxel_gqi PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_single_voxel_fit PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_multivoxel PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_ivim_errors PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_mask PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_with_higher_S0 PASSED [ 51%] dipy/reconst/tests/test_ivim.py::test_b0_threshold_greater_than0 PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_bounds_x0 PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_predict PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_fit_object PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_shape PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_multiple_b0 PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_no_b0 PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_noisy_fit PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_S0 PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_perfusion_fraction PASSED [ 52%] dipy/reconst/tests/test_ivim.py::test_D_star PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_D PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_estimate_linear_fit PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_estimate_f_D_star PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_fit_one_stage PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_leastsq_failing PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_leastsq_error PASSED [ 53%] dipy/reconst/tests/test_ivim.py::test_perfusion_fraction_vp SKIPPED [ 53%] dipy/reconst/tests/test_ivim.py::test_D_star_vp SKIPPED (REQUIRES CVXPY) [ 53%] dipy/reconst/tests/test_ivim.py::test_D_vp SKIPPED (REQUIRES CVXPY) [ 53%] dipy/reconst/tests/test_mapmri.py::test_orthogonality_basis_functions PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_number_of_coefficients PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_initialize_radial_error PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_initialize_gcv PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_initialize_pos_radius PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_signal_fitting PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_isotropic_static_scale_factor PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_signal_fitting_over_radial_order PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_pdf_integral_unity PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_compare_fitted_pdf_with_multi_tensor PASSED [ 54%] dipy/reconst/tests/test_mapmri.py::test_mapmri_metrics_anisotropic PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_mapmri_metrics_isotropic PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_mapmri_laplacian_anisotropic PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_mapmri_laplacian_isotropic PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_signal_fitting_equality_anisotropic_isotropic PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_mapmri_isotropic_design_matrix_separability PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_estimate_radius_with_rtap PASSED [ 55%] dipy/reconst/tests/test_mapmri.py::test_positivity_constraint SKIPPED [ 55%] dipy/reconst/tests/test_mapmri.py::test_plus_constraint SKIPPED (Req...) [ 55%] dipy/reconst/tests/test_mapmri.py::test_laplacian_regularization PASSED [ 56%] dipy/reconst/tests/test_mapmri.py::test_mapmri_odf PASSED [ 56%] dipy/reconst/tests/test_mcsd.py::test_mcsd_model_delta SKIPPED (Requ...) [ 56%] dipy/reconst/tests/test_mcsd.py::test_MultiShellDeconvModel_response SKIPPED [ 56%] dipy/reconst/tests/test_mcsd.py::test_MultiShellDeconvModel SKIPPED [ 56%] dipy/reconst/tests/test_mcsd.py::test_MSDeconvFit SKIPPED (Requires ...) [ 56%] dipy/reconst/tests/test_mcsd.py::test_multi_shell_fiber_response PASSED [ 56%] dipy/reconst/tests/test_mcsd.py::test_mask_for_response_msmt PASSED [ 56%] dipy/reconst/tests/test_mcsd.py::test_mask_for_response_msmt_nvoxels PASSED [ 56%] dipy/reconst/tests/test_mcsd.py::test_response_from_mask_msmt PASSED [ 56%] dipy/reconst/tests/test_mcsd.py::test_auto_response_msmt PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_msdki_predict PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_errors PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_design_matrix PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_msignal PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_msdki_statistics PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_kurtosis_to_smt2_conversion PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_smt2_metrics PASSED [ 57%] dipy/reconst/tests/test_msdki.py::test_smt2_specific_cases PASSED [ 57%] dipy/reconst/tests/test_multi_voxel.py::test_squash PASSED [ 57%] dipy/reconst/tests/test_multi_voxel.py::test_CallableArray PASSED [ 58%] dipy/reconst/tests/test_multi_voxel.py::test_multi_voxel_fit PASSED [ 58%] dipy/reconst/tests/test_odf.py::test_OdfFit PASSED [ 58%] dipy/reconst/tests/test_odf.py::test_minmax_normalize PASSED [ 58%] dipy/reconst/tests/test_odf.py::test_gfa PASSED [ 58%] dipy/reconst/tests/test_peak_finding.py::test_local_maxima PASSED [ 58%] dipy/reconst/tests/test_peak_finding.py::test_remove_similar_peaks PASSED [ 58%] dipy/reconst/tests/test_peak_finding.py::test_search_descending PASSED [ 58%] dipy/reconst/tests/test_qtdmri.py::test_input_parameters PASSED [ 58%] dipy/reconst/tests/test_qtdmri.py::test_orthogonality_temporal_basis_functions PASSED [ 58%] dipy/reconst/tests/test_qtdmri.py::test_anisotropic_isotropic_equivalence PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_cartesian_normalization PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_spherical_normalization PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_anisotropic_reduced_MSE PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_number_of_coefficients PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_calling_cartesian_laplacian_with_precomputed_matrices PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_calling_spherical_laplacian_with_precomputed_matrices PASSED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_q0_constraint_and_unity_of_ODFs SKIPPED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_laplacian_reduces_laplacian_norm SKIPPED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_spherical_laplacian_reduces_laplacian_norm SKIPPED [ 59%] dipy/reconst/tests/test_qtdmri.py::test_laplacian_GCV_higher_weight_with_noise SKIPPED [ 60%] dipy/reconst/tests/test_qtdmri.py::test_l1_increases_sparsity SKIPPED [ 60%] dipy/reconst/tests/test_qtdmri.py::test_spherical_l1_increases_sparsity SKIPPED [ 60%] dipy/reconst/tests/test_qtdmri.py::test_l1_CV SKIPPED (REQUIRES CVXPY) [ 60%] dipy/reconst/tests/test_qtdmri.py::test_elastic_GCV_CV SKIPPED (REQU...) [ 60%] dipy/reconst/tests/test_qtdmri.py::test_visualise_gradient_table_G_Delta_rainbow PASSED [ 60%] dipy/reconst/tests/test_qti.py::test_from_3x3_to_6x1 PASSED [ 60%] dipy/reconst/tests/test_qti.py::test_from_6x1_to_3x3 PASSED [ 60%] dipy/reconst/tests/test_qti.py::test_from_6x6_to_21x1 PASSED [ 60%] dipy/reconst/tests/test_qti.py::test_from_21x1_to_6x6 PASSED [ 60%] dipy/reconst/tests/test_qti.py::test_cvxpy_1x6_to_3x3 PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_cvxpy_1x21_to_6x6 PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_helper_tensors PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_dtd_covariance PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_qti_signal PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_design_matrix PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_ls_sdp_fits PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_qti_model PASSED [ 61%] dipy/reconst/tests/test_qti.py::test_qti_fit PASSED [ 61%] dipy/reconst/tests/test_reco_utils.py::test_adj_countarrs PASSED [ 61%] dipy/reconst/tests/test_reco_utils.py::test_argmax_from_countarrs PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_rumba PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_predict PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_recursive_rumba PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_multishell_rumba PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_mvoxel_rumba PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_global_fit PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_mvoxel_global_fit PASSED [ 62%] dipy/reconst/tests/test_rumba.py::test_generate_kernel PASSED [ 62%] dipy/reconst/tests/test_sfm.py::test_design_matrix PASSED [ 62%] dipy/reconst/tests/test_sfm.py::test_sfm PASSED [ 63%] dipy/reconst/tests/test_sfm.py::test_predict PASSED [ 63%] dipy/reconst/tests/test_sfm.py::test_sfm_background PASSED [ 63%] dipy/reconst/tests/test_sfm.py::test_sfm_stick PASSED [ 63%] dipy/reconst/tests/test_sfm.py::test_sfm_sklearnlinearsolver PASSED [ 63%] dipy/reconst/tests/test_sfm.py::test_exponential_iso PASSED [ 63%] dipy/reconst/tests/test_shm.py::test_order_from_ncoeff PASSED [ 63%] dipy/reconst/tests/test_shm.py::test_sph_harm_ind_list PASSED [ 63%] dipy/reconst/tests/test_shm.py::test_real_sh_descoteaux_from_index PASSED [ 63%] dipy/reconst/tests/test_shm.py::test_gen_dirac PASSED [ 63%] dipy/reconst/tests/test_shm.py::test_real_sym_sh_mrtrix PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_real_sym_sh_basis PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_real_sh_descoteaux1 PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_real_sh_tournier PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_real_sh_descoteaux2 PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_sh_to_sf_matrix PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_smooth_pinv PASSED [ 64%] dipy/reconst/tests/test_shm.py::test_normalize_data PASSED [ 64%] dipy/reconst/tests/test_shm.py::TestQballModel::test_single_voxel_fit PASSED [ 64%] dipy/reconst/tests/test_shm.py::TestQballModel::test_mulit_voxel_fit PASSED [ 64%] dipy/reconst/tests/test_shm.py::TestQballModel::test_sh_order PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestQballModel::test_gfa PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestQballModel::test_min_signal_default PASSED [ 65%] dipy/reconst/tests/test_shm.py::test_SphHarmFit PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestOpdtModel::test_single_voxel_fit PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestOpdtModel::test_mulit_voxel_fit PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestOpdtModel::test_sh_order PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestOpdtModel::test_gfa PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestOpdtModel::test_min_signal_default PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestCsaOdfModel::test_single_voxel_fit PASSED [ 65%] dipy/reconst/tests/test_shm.py::TestCsaOdfModel::test_mulit_voxel_fit PASSED [ 66%] dipy/reconst/tests/test_shm.py::TestCsaOdfModel::test_sh_order PASSED [ 66%] dipy/reconst/tests/test_shm.py::TestCsaOdfModel::test_gfa PASSED [ 66%] dipy/reconst/tests/test_shm.py::TestCsaOdfModel::test_min_signal_default PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_hat_and_lcr PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_bootstrap_array PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_ResidualBootstrapWrapper PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_sf_to_sh PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_faster_sph_harm PASSED [ 66%] dipy/reconst/tests/test_shm.py::test_anisotropic_power PASSED [ 67%] dipy/reconst/tests/test_shm.py::test_calculate_max_order PASSED [ 67%] dipy/reconst/tests/test_shm.py::test_convert_sh_to_full_basis PASSED [ 67%] dipy/reconst/tests/test_shm.py::test_convert_sh_from_legacy PASSED [ 67%] dipy/reconst/tests/test_shm.py::test_convert_sh_to_legacy PASSED [ 67%] dipy/reconst/tests/test_shm.py::test_convert_sh_descoteaux_tournier PASSED [ 67%] dipy/reconst/tests/test_shore.py::test_shore_error PASSED [ 67%] dipy/reconst/tests/test_shore.py::test_shore_positive_constrain SKIPPED [ 67%] dipy/reconst/tests/test_shore.py::test_shore_fitting_no_constrain_e0 PASSED [ 67%] dipy/reconst/tests/test_shore.py::test_shore_fitting_constrain_e0 SKIPPED [ 67%] dipy/reconst/tests/test_shore_metrics.py::test_shore_metrics PASSED [ 68%] dipy/reconst/tests/test_shore_odf.py::test_shore_odf PASSED [ 68%] dipy/reconst/tests/test_shore_odf.py::test_multivox_shore PASSED [ 68%] dipy/reconst/tests/test_utils.py::test_roi_in_volume PASSED [ 68%] dipy/reconst/tests/test_utils.py::test_mask_from_roi PASSED [ 68%] dipy/reconst/tests/test_utils.py::test_convert_tensor PASSED [ 68%] dipy/reconst/tests/test_vec_val_vect.py::test_vec_val_vect PASSED [ 68%] dipy/reconst/tests/test_vec_val_vect.py::test_vec_val_vect_dumber PASSED [ 68%] dipy/segment/tests/test_adjustment.py::test_adjustment PASSED [ 68%] dipy/segment/tests/test_bundles.py::test_rb_check_defaults PASSED [ 68%] dipy/segment/tests/test_bundles.py::test_rb_disable_slr PASSED [ 69%] dipy/segment/tests/test_bundles.py::test_rb_slr_threads PASSED [ 69%] dipy/segment/tests/test_bundles.py::test_rb_no_verbose_and_mam PASSED [ 69%] dipy/segment/tests/test_bundles.py::test_rb_clustermap PASSED [ 69%] dipy/segment/tests/test_bundles.py::test_rb_no_neighb PASSED [ 69%] dipy/segment/tests/test_bundles.py::test_rb_reduction_mam PASSED [ 69%] dipy/segment/tests/test_clustering.py::test_cluster_attributes_and_constructor PASSED [ 69%] dipy/segment/tests/test_clustering.py::test_cluster_assign PASSED [ 69%] dipy/segment/tests/test_clustering.py::test_cluster_iter PASSED [ 69%] dipy/segment/tests/test_clustering.py::test_cluster_getitem PASSED [ 69%] dipy/segment/tests/test_clustering.py::test_cluster_str_and_repr PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_centroid_attributes_and_constructor PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_centroid_assign PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_centroid_iter PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_centroid_getitem PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_attributes_and_constructor PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_add_cluster PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_remove_cluster PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_clear PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_iter PASSED [ 70%] dipy/segment/tests/test_clustering.py::test_cluster_map_getitem PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_str_and_repr PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_size PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_clusters_sizes PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_get_small_and_large_clusters PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_comparison_with_int PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_comparison_with_object PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_attributes_and_constructor PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_add_cluster PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_remove_cluster PASSED [ 71%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_iter PASSED [ 72%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_getitem PASSED [ 72%] dipy/segment/tests/test_clustering.py::test_cluster_map_centroid_comparison_with_int PASSED [ 72%] dipy/segment/tests/test_clustering.py::test_subclassing_clustering PASSED [ 72%] dipy/segment/tests/test_feature.py::test_identity_feature PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_resample PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_center_of_mass PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_midpoint PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_arclength PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_vector_of_endpoints PASSED [ 72%] dipy/segment/tests/test_feature.py::test_feature_extract PASSED [ 73%] dipy/segment/tests/test_feature.py::test_subclassing_feature PASSED [ 73%] dipy/segment/tests/test_feature.py::test_using_python_feature_with_cython_metric PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_radius_search PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_varying_radius PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_single_point_slines PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_empty_results PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_invalid_max_radius PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_invalid_radius PASSED [ 73%] dipy/segment/tests/test_fss.py::test_fss_invalid_mpts PASSED [ 73%] dipy/segment/tests/test_mask.py::test_mask PASSED [ 74%] dipy/segment/tests/test_mask.py::test_bounding_box PASSED [ 74%] dipy/segment/tests/test_mask.py::test_median_otsu PASSED [ 74%] dipy/segment/tests/test_metric.py::test_metric_minimum_average_direct_flip PASSED [ 74%] dipy/segment/tests/test_metric.py::test_metric_cosine PASSED [ 74%] dipy/segment/tests/test_metric.py::test_subclassing_metric PASSED [ 74%] dipy/segment/tests/test_metric.py::test_distance_matrix PASSED [ 74%] dipy/segment/tests/test_metric.py::test_mean_distances PASSED [ 74%] dipy/segment/tests/test_mrf.py::test_grayscale_image PASSED [ 74%] dipy/segment/tests/test_mrf.py::test_grayscale_iter PASSED [ 74%] dipy/segment/tests/test_mrf.py::test_square_iter PASSED [ 75%] dipy/segment/tests/test_mrf.py::test_icm_square PASSED [ 75%] dipy/segment/tests/test_mrf.py::test_classify PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_3D_points PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_3D_segments PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_with_simulated_bundles PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_with_simulated_bundles2 PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_circle_parallel_fornix PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_raise_mdf PASSED [ 75%] dipy/segment/tests/test_qbx.py::test_qbx_and_merge PASSED [ 75%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_empty_data PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_wrong_metric PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_shape_incompatibility PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_2D PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_streamlines PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_with_python_metric PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_with_not_order_invariant_metric PASSED [ 76%] dipy/segment/tests/test_quickbundles.py::test_quickbundles_memory_leaks PASSED [ 76%] dipy/sims/tests/test_phantom.py::test_phantom PASSED [ 76%] dipy/sims/tests/test_phantom.py::test_add_noise PASSED [ 76%] dipy/sims/tests/test_voxel.py::test_check_directions PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_sticks_and_ball PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_single_tensor PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_multi_tensor PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_snr PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_all_tensor_evecs PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_kurtosis_elements PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_DKI_simulations_aligned_fibers PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_DKI_crossing_fibers_simulations PASSED [ 77%] dipy/sims/tests/test_voxel.py::test_single_tensor_btens PASSED [ 78%] dipy/sims/tests/test_voxel.py::test_multi_tensor_btens PASSED [ 78%] dipy/stats/tests/test_analysis.py::test_gaussian_weights PASSED [ 78%] dipy/stats/tests/test_analysis.py::test_afq_profile PASSED [ 78%] dipy/stats/tests/test_resampling.py::test_bootstrap PASSED [ 78%] dipy/stats/tests/test_resampling.py::test_jackknife PASSED [ 78%] dipy/testing/tests/test_decorators.py::test_skipper PASSED [ 78%] dipy/testing/tests/test_memory.py::test_get_type_refcount PASSED [ 78%] dipy/testing/tests/test_testing.py::test_assert PASSED [ 78%] dipy/testing/tests/test_testing.py::test_clear_and_catch_warnings PASSED [ 78%] dipy/tracking/tests/test_distances.py::test_LSCv2 PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_bundles_distances_mam PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_bundles_distances_mdf PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_mam_distances PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_approx_ei_traj PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_approx_mdl_traj PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_point_track_sq_distance PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_track_roi_intersection_check PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_minimum_distance PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_most_similar_mam PASSED [ 79%] dipy/tracking/tests/test_distances.py::test_cut_plane PASSED [ 80%] dipy/tracking/tests/test_learning.py::test_det_corr_tracks PASSED [ 80%] dipy/tracking/tests/test_life.py::test_streamline_gradients PASSED [ 80%] dipy/tracking/tests/test_life.py::test_streamline_tensors PASSED [ 80%] dipy/tracking/tests/test_life.py::test_streamline_signal PASSED [ 80%] dipy/tracking/tests/test_life.py::test_voxel2streamline PASSED [ 80%] dipy/tracking/tests/test_life.py::test_FiberModel_init PASSED [ 80%] dipy/tracking/tests/test_life.py::test_FiberFit PASSED [ 80%] dipy/tracking/tests/test_life.py::test_fit_data PASSED [ 80%] dipy/tracking/tests/test_mesh.py::test_triangles_area PASSED [ 80%] dipy/tracking/tests/test_mesh.py::test_surface_seeds PASSED [ 81%] dipy/tracking/tests/test_mesh.py::test_vertices_to_triangles PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_downsample_deprecated PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_splines PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_segment_intersection PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_normalized_3vec PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_inner_3vecs PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_add_sub_3vecs PASSED [ 81%] dipy/tracking/tests/test_metrics.py::test_winding PASSED [ 81%] dipy/tracking/tests/test_propagation.py::test_offset PASSED [ 81%] dipy/tracking/tests/test_propagation.py::test_eudx_both_directions_errors PASSED [ 82%] dipy/tracking/tests/test_stopping_criterion.py::test_binary_stopping_criterion PASSED [ 82%] dipy/tracking/tests/test_stopping_criterion.py::test_threshold_stopping_criterion PASSED [ 82%] dipy/tracking/tests/test_stopping_criterion.py::test_act_stopping_criterion PASSED [ 82%] dipy/tracking/tests/test_stopping_criterion.py::test_cmc_stopping_criterion PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_set_number_of_points PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_set_number_of_points_memory_leaks PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_length PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_length_memory_leaks PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_unlist_relist_streamlines PASSED [ 82%] dipy/tracking/tests/test_streamline.py::test_transform_streamlines_dtype_in_place PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_transform_streamlines_dtype PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_transform_empty_streamlines PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_deform_streamlines PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_center_and_transform PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_select_random_streamlines PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_compress_streamlines PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_compress_streamlines_identical_points PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_compress_streamlines_memory_leaks PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_select_by_rois PASSED [ 83%] dipy/tracking/tests/test_streamline.py::test_orient_by_rois PASSED [ 84%] dipy/tracking/tests/test_streamline.py::test_orient_by_streamline PASSED [ 84%] dipy/tracking/tests/test_streamline.py::test_values_from_volume PASSED [ 84%] dipy/tracking/tests/test_streamline.py::test_streamlines_generator PASSED [ 84%] dipy/tracking/tests/test_streamline.py::test_cluster_confidence PASSED [ 84%] dipy/tracking/tests/test_track_volumes.py::test_track_volumes PASSED [ 84%] dipy/tracking/tests/test_tracking.py::test_stop_conditions PASSED [ 84%] dipy/tracking/tests/test_tracking.py::test_save_seeds PASSED [ 84%] dipy/tracking/tests/test_tracking.py::test_tracking_max_angle PASSED [ 84%] dipy/tracking/tests/test_tracking.py::test_probabilistic_odf_weighted_tracker PASSED [ 84%] dipy/tracking/tests/test_tracking.py::test_particle_filtering_tractography PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_maximum_deterministic_tracker PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_bootstap_peak_tracker PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_closest_peak_tracker PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_eudx_tracker PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_affine_transformations PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_random_seed_initialization PASSED [ 85%] dipy/tracking/tests/test_tracking.py::test_tracking_with_initial_directions PASSED [ 85%] dipy/tracking/tests/test_utils.py::test_density_map PASSED [ 85%] dipy/tracking/tests/test_utils.py::test_to_voxel_coordinates_precision PASSED [ 85%] dipy/tracking/tests/test_utils.py::test_connectivity_matrix PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_ndbincount PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_reduce_labels PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_target PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_target_lb PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_target_line_based_out_of_bounds PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_near_roi PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_streamline_mapping PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_length PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_seeds_from_mask PASSED [ 86%] dipy/tracking/tests/test_utils.py::test_random_seeds_from_mask PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_connectivity_matrix_shape PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_unique_rows PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_reduce_rois PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_path_length PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_min_at PASSED [ 87%] dipy/tracking/tests/test_utils.py::test_curvature_angle PASSED [ 87%] dipy/utils/tests/test_arrfuncs.py::test_as_native PASSED [ 87%] dipy/utils/tests/test_arrfuncs.py::test_pinv PASSED [ 87%] dipy/utils/tests/test_deprecator.py::test_cmp_pkg_version PASSED [ 87%] dipy/utils/tests/test_deprecator.py::test__ensure_cr PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test__add_dep_doc PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecate_with_version PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecated_argument PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecated_argument_in_kwargs PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecated_argument_multi_deprecation PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecated_argument_not_allowed_use PASSED [ 88%] dipy/utils/tests/test_deprecator.py::test_deprecated_argument_remove PASSED [ 88%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_dot PASSED [ 88%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_norm PASSED [ 89%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_normalize PASSED [ 89%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_random PASSED [ 89%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_random_perpendicular_vector PASSED [ 89%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_random_point_within_circle PASSED [ 89%] dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so::test_random_vector PASSED [ 89%] dipy/utils/tests/test_multiproc.py::test_determine_num_processes PASSED [ 89%] dipy/utils/tests/test_omp.py::test_set_omp_threads PASSED [ 89%] dipy/utils/tests/test_omp.py::test_default_threads SKIPPED (joblib a...) [ 89%] dipy/utils/tests/test_omp.py::test_determine_num_threads PASSED [ 89%] dipy/utils/tests/test_optpkg.py::test_optional_package PASSED [ 90%] dipy/utils/tests/test_parallel.py::test_paramap PASSED [ 90%] dipy/utils/tests/test_tripwire.py::test_is_tripwire PASSED [ 90%] dipy/utils/tests/test_tripwire.py::test_tripwire PASSED [ 90%] dipy/utils/tests/test_volume.py::test_adjacency_calc PASSED [ 90%] dipy/viz/horizon/tab/tests/test_base.py::test_build_label SKIPPED (N...) [ 90%] dipy/viz/horizon/tab/tests/test_base.py::test_build_slider SKIPPED (...) [ 90%] dipy/viz/horizon/tab/tests/test_base.py::test_build_checkbox SKIPPED [ 90%] dipy/viz/horizon/tab/tests/test_base.py::test_build_switcher SKIPPED [ 90%] dipy/viz/tests/test_apps.py::test_horizon_events SKIPPED (Needs xvfb) [ 90%] dipy/viz/tests/test_apps.py::test_horizon SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_apps.py::test_horizon_wrong_dtype_images SKIPPED [ 91%] dipy/viz/tests/test_apps.py::test_roi_images SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_apps.py::test_surfaces SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_apps.py::test_small_horizon_import PASSED [ 91%] dipy/viz/tests/test_fury.py::test_slicer SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_fury.py::test_contour_from_roi SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_fury.py::test_bundle_maps SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_fury.py::test_odf_slicer SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_fury.py::test_tensor_slicer SKIPPED (Needs xvfb) [ 91%] dipy/viz/tests/test_regtools.py::test_plot_2d_diffeomorphic_map PASSED [ 92%] dipy/viz/tests/test_streamline.py::test_output_created SKIPPED (Requ...) [ 92%] dipy/viz/tests/test_streamline.py::test_incorrect_view SKIPPED (Requ...) [ 92%] dipy/viz/tests/test_streamline.py::test_bundlewarp_viz SKIPPED (Requ...) [ 92%] dipy/viz/tests/test_util.py::test_check_img_shapes PASSED [ 92%] dipy/viz/tests/test_util.py::test_check_img_dtype PASSED [ 92%] dipy/viz/tests/test_util.py::test_show_ellipsis PASSED [ 92%] dipy/viz/tests/test_util.py::test_is_binary_image PASSED [ 92%] dipy/viz/tests/test_util.py::test_unpack_surface PASSED [ 92%] dipy/viz/tests/test_util.py::test_check_peak_size PASSED [ 92%] dipy/workflows/tests/test_align.py::test_reslice PASSED [ 93%] dipy/workflows/tests/test_align.py::test_slr_flow PASSED [ 93%] dipy/workflows/tests/test_align.py::test_image_registration PASSED [ 93%] dipy/workflows/tests/test_align.py::test_apply_transform_error PASSED [ 93%] dipy/workflows/tests/test_align.py::test_apply_affine_transform PASSED [ 93%] dipy/workflows/tests/test_align.py::test_motion_correction PASSED [ 93%] dipy/workflows/tests/test_align.py::test_syn_registration_flow PASSED [ 93%] dipy/workflows/tests/test_align.py::test_bundlewarp_flow PASSED [ 93%] dipy/workflows/tests/test_denoise.py::test_nlmeans_flow PASSED [ 93%] dipy/workflows/tests/test_denoise.py::test_patch2self_flow PASSED [ 93%] dipy/workflows/tests/test_denoise.py::test_lpca_flow PASSED [ 94%] dipy/workflows/tests/test_denoise.py::test_mppca_flow PASSED [ 94%] dipy/workflows/tests/test_denoise.py::test_gibbs_flow PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_signature PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_summary PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_extended_summary PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_parameters PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_other_parameters PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_returns PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_notes PASSED [ 94%] dipy/workflows/tests/test_docstring_parser.py::test_references PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_examples PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_index PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_str PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_parameters_without_extended_description PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_raises PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_warns PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_see_also PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_empty_first_line PASSED [ 95%] dipy/workflows/tests/test_docstring_parser.py::test_duplicate_signature PASSED [ 95%] dipy/workflows/tests/test_iap.py::test_none_or_dtype PASSED [ 96%] dipy/workflows/tests/test_iap.py::test_variable_type PASSED [ 96%] dipy/workflows/tests/test_iap.py::test_iap PASSED [ 96%] dipy/workflows/tests/test_iap.py::test_optional_str PASSED [ 96%] dipy/workflows/tests/test_iap.py::test_iap_epilog_and_description PASSED [ 96%] dipy/workflows/tests/test_iap.py::test_flow_runner PASSED [ 96%] dipy/workflows/tests/test_io.py::test_io_fetch SKIPPED (test needs i...) [ 96%] dipy/workflows/tests/test_io.py::test_io_fetch_fetcher_datanames PASSED [ 96%] dipy/workflows/tests/test_io.py::test_split_flow PASSED [ 96%] dipy/workflows/tests/test_io.py::test_convert_sh_flow PASSED [ 96%] dipy/workflows/tests/test_io.py::test_convert_tensors_flow PASSED [ 97%] dipy/workflows/tests/test_masking.py::test_mask PASSED [ 97%] dipy/workflows/tests/test_nn.py::test_evac_plus_flow SKIPPED (Requir...) [ 97%] dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csa PASSED [ 97%] dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csd PASSED [ 97%] dipy/workflows/tests/test_reconst_dki.py::test_reconst_dki PASSED [ 97%] dipy/workflows/tests/test_reconst_dsi.py::test_reconst_dsi PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_wls PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_nlls PASSED [ 97%] dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_alt_tensor PASSED [ 97%] dipy/workflows/tests/test_reconst_ivim.py::test_reconst_ivim PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_laplacian PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_none PASSED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_both SKIPPED [ 98%] dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_positivity SKIPPED [ 98%] dipy/workflows/tests/test_reconst_rumba.py::test_reconst_rumba PASSED [ 98%] dipy/workflows/tests/test_segment.py::test_median_otsu_flow PASSED [ 98%] dipy/workflows/tests/test_segment.py::test_recobundles_flow PASSED [ 98%] dipy/workflows/tests/test_stats.py::test_stats PASSED [ 98%] dipy/workflows/tests/test_stats.py::test_buan_bundle_profiles SKIPPED [ 98%] dipy/workflows/tests/test_stats.py::test_bundle_analysis_tractometry_flow SKIPPED [ 99%] dipy/workflows/tests/test_stats.py::test_linear_mixed_models_flow SKIPPED [ 99%] dipy/workflows/tests/test_stats.py::test_bundle_shape_analysis_flow SKIPPED [ 99%] dipy/workflows/tests/test_tracking.py::test_particle_filtering_tracking_workflows PASSED [ 99%] dipy/workflows/tests/test_tracking.py::test_local_fiber_tracking_workflow PASSED [ 99%] dipy/workflows/tests/test_viz.py::test_horizon_flow SKIPPED (Require...) [ 99%] dipy/workflows/tests/test_workflow.py::test_force_overwrite PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_get_sub_runs PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_run PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_missing_file PASSED [100%] =============================== warnings summary =============================== debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/tests/test_reslice.py: 24 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/tests/test_gibbs.py: 35 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/tests/test_peaks.py: 118 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py: 16 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_parallel.py: 40 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_denoise.py: 1 warning debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_csa_csd.py: 12 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_rumba.py: 20 warnings /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=1696123) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py::test_sfm /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=1696123) is multi-threaded, use of fork() may lead to deadlocks in the child. pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 824 passed, 167 skipped, 9 deselected, 267 warnings in 6064.09s (1:41:04) === + rm .pytest_cache -rf # Cleanup files landing unnecessarily in the python3 modules directory. rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.nii.gz removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dirs.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/gfa.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/inc_static.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/indices.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/shm.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/values.nii.gz' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.trk removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moving_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/recognized_orig.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/static_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/tractogram.trk' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/affine.txt removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/affine.txt' # Cleanup files landing in non-standard path rm -rfv debian/python3-dipy/usr/doc removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_gqi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_localpca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_fwdti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/surface_seed.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mcsd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_masks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_gibbs.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_quickbundles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_advanced.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_ascm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_ivim.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_group_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_tools.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/histology_resdnn.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/fast_streamline_search.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_multi_tensor.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_nlmeans.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sh.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/brain_extraction_dwi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_extraction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/piesno.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki_micro.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_mppca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/register_binary_fuzzy.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_shape_similarity.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/snr_in_cc.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_pft.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/gradients_spheres.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/path_length_map.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mapmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_probabilistic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_forecast.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/motion_correction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundlewarp_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_introduction_eudx.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_msdki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_bootstrap_peaks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/cluster_confidence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_ptt.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_features.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_formats.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_assignment_maps.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/combined_workflow_creation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/quick_start.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsid.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/workflow_creation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/kfold_xval.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_patch2self.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/linear_fascicle_evaluation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reslice_datasets.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtdmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tissue_classification.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_roi_contour.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_cti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_extending_clustering_framework.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/contextual_enhancement.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_2d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/afq_tract_profiles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_slice.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/restore_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtiplus.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_length.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/fiber_to_bundle_coherence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_deterministic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_stopping_criterion.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_bundles.py' removed directory 'debian/python3-dipy/usr/doc/dipy/examples' removed directory 'debian/python3-dipy/usr/doc/dipy' removed directory 'debian/python3-dipy/usr/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-dipy-doc. If the default is wrong, please use --doc-main-package dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' set -e \ ; test -d debian/python3-dipy/usr/lib || exit 0 \ ; for lib in $(find debian/python3-dipy/usr/lib -name "*.so") \ ; do sdir=$(dirname $lib) \ ; tdir=debian/python3-dipy-lib/${sdir#*python3-dipy/} \ ; mkdir -p "${tdir}" \ ; mv -v "${lib}" "${tdir}" \ ; done renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-x86_64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-x86_64-linux-gnu.so' dh_numpy3 -ppython3-dipy-lib dh_python3 I: dh_python3 pydist:339: Ignoring complex environment marker: tomli; python_version < "3.11" and extra == "doc" make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild debian/rules execute_before_dh_link-indep make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc \ -X.par -X.bin -Xobjects.inv make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_fixperms -O--buildsystem=pybuild debian/rules execute_after_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Fix a couple of executables neither elf nor scripts. find debian/python3-dipy/usr/lib/python3*/dist-packages/ \ -name '*.py' \ -exec chmod -x '{}' '+' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_missing -O--buildsystem=pybuild debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_dwz || true make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dipy: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dipy-lib' in '../python3-dipy-lib_1.9.0-8_amd64.deb'. dpkg-deb: building package 'python-dipy-doc' in '../python-dipy-doc_1.9.0-8_all.deb'. dpkg-deb: building package 'python3-dipy' in '../python3-dipy_1.9.0-8_all.deb'. dpkg-deb: building package 'python3-dipy-lib-dbgsym' in '../python3-dipy-lib-dbgsym_1.9.0-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dipy_1.9.0-8_amd64.buildinfo dpkg-genchanges --build=binary -O../dipy_1.9.0-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1519285 and its subdirectories I: Current time: Wed Nov 6 12:46:09 -12 2024 I: pbuilder-time-stamp: 1730940369 Thu Nov 7 00:46:11 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Nov 7 00:46:11 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Nov 7 01:13:49 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Nov 7 01:13:49 UTC 2024 I: dipy_1.9.0-8_amd64.changes: Format: 1.8 Date: Tue, 24 Sep 2024 15:16:36 +0200 Source: dipy Binary: python-dipy-doc python3-dipy python3-dipy-lib python3-dipy-lib-dbgsym Architecture: all amd64 Version: 1.9.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python-dipy-doc - Python library for the analysis of diffusion MRI datasets -- docu python3-dipy - Python library for the analysis of diffusion MRI datasets python3-dipy-lib - Python library for the analysis of diffusion MRI datasets -- Pyth Changes: dipy (1.9.0-8) unstable; urgency=medium . * Pandas is optional, move it to Recommends; skip it as a build-dep on mips64el for now. Checksums-Sha1: 75de287280bb3be7fd8f1a9ac14efc86582453e8 14042 dipy_1.9.0-8_amd64.buildinfo a54f2a39790d08c0a26ccd4775ac0031f0db68a9 2812504 python-dipy-doc_1.9.0-8_all.deb 4cee1d7d79d3d13637a573b0fafb27b50136676f 21521284 python3-dipy-lib-dbgsym_1.9.0-8_amd64.deb 8adedfafad03f19bc998105fce4a39d483c2b95d 2241692 python3-dipy-lib_1.9.0-8_amd64.deb d245b692f5b764cbaa4f732604d03689a7933941 3476152 python3-dipy_1.9.0-8_all.deb Checksums-Sha256: ba073ade7d37d8d97c1d0e1c4928c0c3972eb6a91187848de1415b58448cd229 14042 dipy_1.9.0-8_amd64.buildinfo f9b4e634256056307b47633497a6433b8577fa90ca5fd619b67f0a7cb3066ea0 2812504 python-dipy-doc_1.9.0-8_all.deb 99846dc1dce03d0c44b94a7e119a73e2067ea93c12ce955171336d427e2007e2 21521284 python3-dipy-lib-dbgsym_1.9.0-8_amd64.deb e79efec2b043b851e1d8a39d9c90186f048cbbf4bb6c26587011aacb364ce01b 2241692 python3-dipy-lib_1.9.0-8_amd64.deb b174559d8c379d78cc9ace5a34b310ef28493e32d8bc809939c4fe3bd6f4b5da 3476152 python3-dipy_1.9.0-8_all.deb Files: b35600332636692687d247dba42f06a8 14042 python optional dipy_1.9.0-8_amd64.buildinfo 5cd353f204d7dc607a60e2c8a27394e8 2812504 doc optional python-dipy-doc_1.9.0-8_all.deb 4d3fe67618d050d8446152d8d7b39078 21521284 debug optional python3-dipy-lib-dbgsym_1.9.0-8_amd64.deb c91052c001bb405c68095a104fa19607 2241692 python optional python3-dipy-lib_1.9.0-8_amd64.deb 2a303b0afde5831ec8f5053a730469ae 3476152 python optional python3-dipy_1.9.0-8_all.deb Thu Nov 7 01:13:54 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_9-22452.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/dipy_1.9.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/dipy_1.9.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/dipy_1.9.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/b1/dipy_1.9.0-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vrtqSOAo/b2/dipy_1.9.0-8_amd64.changes ## close_archive (total time: 0.003s) 0.002s 104 calls diffoscope.comparators.xz.XzContainer 0.001s 84 calls diffoscope.comparators.deb.DebTarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer ## command (total time: 2683.943s) 1194.348s 39812 calls readelf 1014.319s 4729 calls diff 346.497s 8580 calls objdump 67.660s 78 calls objcopy 52.602s 104 calls xz 5.014s 869 calls strings 3.295s 1551 calls html2text 0.077s 16 calls cmp 0.076s 16 calls cmp (external) 0.055s 230 calls cmp (internal) ## compare_files (cumulative) (total time: 7838.521s) 1464.197s 1 call abc.DotChangesFile 1464.028s 3 calls abc.DebFile 1463.691s 6 calls abc.XzFile 1460.959s 3 calls abc.DebDataTarFile 1436.759s 79 calls abc.ElfFile 491.091s 390 calls diffoscope.comparators.elf.ElfCodeSection 35.586s 1288 calls diffoscope.comparators.elf.ElfSection 18.075s 141 calls abc.HtmlFile 2.638s 118 calls diffoscope.comparators.elf.ElfStringSection 0.893s 39 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.487s 3 calls abc.TarFile 0.070s 3 calls abc.Md5sumsFile 0.046s 2 calls abc.TextFile ## container_extract (total time: 61.309s) 52.612s 104 calls diffoscope.comparators.xz.XzContainer 8.207s 614 calls diffoscope.comparators.deb.DebTarContainer 0.459s 110 calls diffoscope.comparators.deb.DebContainer 0.031s 26 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 3.491s) 3.491s 1146 calls linediff ## has_same_content_as (total time: 0.199s) 0.125s 141 calls abc.HtmlFile 0.027s 79 calls abc.ElfFile 0.016s 1288 calls diffoscope.comparators.elf.ElfSection 0.009s 4 calls abc.DebFile 0.007s 5 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.005s 390 calls diffoscope.comparators.elf.ElfCodeSection 0.002s 6 calls abc.Md5sumsFile 0.002s 7 calls abc.TextFile 0.001s 118 calls diffoscope.comparators.elf.ElfStringSection 0.001s 3 calls abc.TarFile 0.001s 3 calls abc.DebDataTarFile 0.001s 6 calls abc.XzFile 0.000s 39 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 1 call abc.DotChangesFile ## main (total time: 1559.205s) 1559.188s 2 calls outputs 0.016s 1 call cleanup ## open_archive (total time: 0.004s) 0.002s 84 calls diffoscope.comparators.deb.DebTarContainer 0.001s 104 calls diffoscope.comparators.xz.XzContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer ## output (total time: 93.854s) 93.797s 1 call html 0.034s 1 call text 0.024s 1 call json ## recognizes (total time: 64.247s) 51.615s 2040 calls diffoscope.comparators.utils.archive.ArchiveMember 11.782s 20546 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.605s 12 calls diffoscope.comparators.binary.FilesystemFile 0.245s 432 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 2.677s) 2.677s 2090 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 26min 2.857s CPU time consumed: 30min 37ms Thu Nov 7 01:40:02 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu Nov 7 01:40:02 UTC 2024 E: dipy failed to build reproducibly in trixie on amd64. Thu Nov 7 01:40:05 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 7 01:40:05 UTC 2024 I: Submitting 16K b1/dipy_1.9.0-8_amd64.buildinfo.asc Thu Nov 7 01:40:06 UTC 2024 I: Submitting 16K b2/dipy_1.9.0-8_amd64.buildinfo.asc Thu Nov 7 01:40:07 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 7 01:40:07 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 7 01:40:07 UTC 2024 I: Removing signed dipy_1.9.0-8_amd64.buildinfo.asc files: removed './b1/dipy_1.9.0-8_amd64.buildinfo.asc' removed './b2/dipy_1.9.0-8_amd64.buildinfo.asc'