Sun May 12 13:34:43 UTC 2024 I: starting to build dialign-t/trixie/amd64 on jenkins on '2024-05-12 13:34' Sun May 12 13:34:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_1/5577/console.log Sun May 12 13:34:43 UTC 2024 I: Downloading source for trixie/dialign-t=1.0.2-15 --2024-05-12 13:34:44-- http://deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-15.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘dialign-t_1.0.2-15.dsc’ 0K .. 100% 60.4M=0s 2024-05-12 13:34:44 (60.4 MB/s) - ‘dialign-t_1.0.2-15.dsc’ saved [2201/2201] Sun May 12 13:34:44 UTC 2024 I: dialign-t_1.0.2-15.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign-t Binary: dialign-tx, dialign-tx-data Architecture: any all Version: 1.0.2-15 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://dialign-tx.gobics.de/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign-tx deb science optional arch=any dialign-tx-data deb science optional arch=all Checksums-Sha1: 4d4e50070f019b88078105ec21f22b1005a010af 1765296 dialign-t_1.0.2.orig.tar.gz a950f177e538b9c53b3f0cd74182bf3d90b254e4 19100 dialign-t_1.0.2-15.debian.tar.xz Checksums-Sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f 1765296 dialign-t_1.0.2.orig.tar.gz 3de80c08891afe5afa70157f281db5a3044514c284f82dc06269e6a48a7019fd 19100 dialign-t_1.0.2-15.debian.tar.xz Files: 8ccfb1d91136157324d1e513f184ca29 1765296 dialign-t_1.0.2.orig.tar.gz cb5f6d9ca6851fb26535b344f69a15c4 19100 dialign-t_1.0.2-15.debian.tar.xz Dgit: ccf566831e0b222de7e70408cbe1d9b07a30609b debian archive/debian/1.0.2-15 https://git.dgit.debian.org/dialign-t -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmX1uWcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq+bBAAgECaWdm0vRTqZv1zeAg87RQ0zAuK 5vZzKCgpCRtMQu5Y41zzi4O0zbQcI06hkvQk0lWQsS7xyZneZfZm7QA51NGBwTPR mvuEQSsTwIMJF3TzKDz+ZtM4PBR/Q8LYh0JseJkLOC+NYdyd1TPrEgd9v8U6rAwv yE4X9ZbQzIfbIfwWC6nhd7bxZVq4GDgiJa+/AdW/oq3co9qp9dodxKGv75OFGpt4 vPTNtS6nqUr0MZZdROExWitPYb61YP/jrn1K/OjRzaWr3cLcympculL6PTdU9BvC NIzHjRrjvCycOSZMBR9mR5st96XYjxY8N+ESsLik//eJJwlV15rgj/JYgFZjtxRh Id4w9eSaZ4jjYgf9tfgaAC4RKVKZtyawkeHYjxOTIPdlVn14IGETIHCcWsWgneRO 1SMAVP/VakNPP9TmY0Utj/k2G4FgIy83FC4UDiRv3verVGraoh6ffRDKXMpXf0/X b5FBVN0lkMXC0g2vPogDwQNkXrveSGxVVR7dGQ0/UCDlNidzsYX/31yddU3Ty86/ 1teyezxMtHk2e/d38bh+N2BsO1ciqzaclpQT0ncsFA8lncv+fc6Z1+nPszomJtSJ piW1qYUimasSkhnFq/C/tCD6r3Qtln8II9UH9Bb8Px5ntjpZ9nXCR+//wiDLeIiN XBXp3P0cRHwbWpc= =E+nq -----END PGP SIGNATURE----- Sun May 12 13:34:44 UTC 2024 I: Checking whether the package is not for us Sun May 12 13:34:44 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun May 12 13:34:44 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun May 12 13:36:34 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 12 01:34:46 -12 2024 I: pbuilder-time-stamp: 1715520886 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-15.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-15.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Mar 16 15:23:19 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dialign-t_1.0.2-15.dsc: no acceptable signature found dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1487399/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5c64c30b055043aabb6580e9a9e88c53' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1487399' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/pbuilderrc_b3xf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/b1 --logfile b1/build.log dialign-t_1.0.2-15.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1487399/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19700 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Fetched 19.0 MB in 6s (3003 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19700 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j20 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms chmod 644 /build/reproducible-path/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-15_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-15_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-15_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1487399 and its subdirectories I: Current time: Sun May 12 01:36:33 -12 2024 I: pbuilder-time-stamp: 1715520993 Sun May 12 13:36:34 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun May 12 13:36:34 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun May 12 13:37:14 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun May 12 13:37:15 UTC 2024 I: dialign-t_1.0.2-15_amd64.changes: Format: 1.8 Date: Sat, 16 Mar 2024 16:11:18 +0100 Source: dialign-t Binary: dialign-tx dialign-tx-data dialign-tx-dbgsym Architecture: all amd64 Version: 1.0.2-15 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Segment-based multiple sequence alignment (data files) Closes: 1066559 Changes: dialign-t (1.0.2-15) unstable; urgency=medium . * Team upload. * fix-declarations.patch: new: fix build failures. (Closes: #1066559) * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: c30e04369f629a6042b92e32842886182f8c3cc8 5436 dialign-t_1.0.2-15_amd64.buildinfo aefcc634dd05e45658df6a0c1e0b35f12a899287 862500 dialign-tx-data_1.0.2-15_all.deb fad8b1cb09723ff0179bbd8b07b3b58ee13d210e 167708 dialign-tx-dbgsym_1.0.2-15_amd64.deb 036b88cf9acf3262b164683f5fed7289bf2cafc1 87580 dialign-tx_1.0.2-15_amd64.deb Checksums-Sha256: f510f176033d7595a438886fcbfabd934d1fc5e3b3da517d228bb43ebac366b9 5436 dialign-t_1.0.2-15_amd64.buildinfo a0d614f57a95129871d7b9304e5ce9ba0060a198a202e92e7017c3668f971002 862500 dialign-tx-data_1.0.2-15_all.deb 5e25d52c9f3103ecebf79c48db1b7140c5b925e3c144d045525062c6a0eb711e 167708 dialign-tx-dbgsym_1.0.2-15_amd64.deb b6a386329724834e92d2df879c4236ea898426f8b615d0852ca14c4f594a4025 87580 dialign-tx_1.0.2-15_amd64.deb Files: c504d179add9b4b7775975109a671bf9 5436 science optional dialign-t_1.0.2-15_amd64.buildinfo 17ce791578354d403eabb28527347418 862500 science optional dialign-tx-data_1.0.2-15_all.deb 82af2d7cbef68550dd6016ecfa9516ef 167708 debug optional dialign-tx-dbgsym_1.0.2-15_amd64.deb c835ac37255bfa56afd1fa4d671c6565 87580 science optional dialign-tx_1.0.2-15_amd64.deb Sun May 12 13:37:16 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_1-5577.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/dialign-t_1.0.2-15.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/dialign-t_1.0.2-15.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/dialign-t_1.0.2-15.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/b1/dialign-t_1.0.2-15_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/b2/dialign-t_1.0.2-15_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.369s) 0.369s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 715ms CPU time consumed: 716ms Sun May 12 13:49:43 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sun May 12 13:49:43 UTC 2024 I: dialign-t from trixie built successfully and reproducibly on amd64. Sun May 12 13:49:48 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 12 13:49:48 UTC 2024 I: Submitting 8.0K b1/dialign-t_1.0.2-15_amd64.buildinfo.asc Sun May 12 13:50:03 UTC 2024 I: Submitting 8.0K b2/dialign-t_1.0.2-15_amd64.buildinfo.asc Sun May 12 13:50:23 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 12 13:50:23 UTC 2024 I: Done submitting .buildinfo files. Sun May 12 13:50:23 UTC 2024 I: Removing signed dialign-t_1.0.2-15_amd64.buildinfo.asc files: removed './b1/dialign-t_1.0.2-15_amd64.buildinfo.asc' removed './b2/dialign-t_1.0.2-15_amd64.buildinfo.asc'