Fri Dec 20 05:19:03 UTC 2024 I: starting to build deblur/trixie/amd64 on jenkins on '2024-12-20 05:18' Fri Dec 20 05:19:03 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/25875/console.log Fri Dec 20 05:19:03 UTC 2024 I: Downloading source for trixie/deblur=1.1.1-3 --2024-12-20 05:19:03-- http://deb.debian.org/debian/pool/main/d/deblur/deblur_1.1.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2117 (2.1K) [text/prs.lines.tag] Saving to: ‘deblur_1.1.1-3.dsc’ 0K .. 100% 350M=0s 2024-12-20 05:19:03 (350 MB/s) - ‘deblur_1.1.1-3.dsc’ saved [2117/2117] Fri Dec 20 05:19:03 UTC 2024 I: deblur_1.1.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: deblur Binary: deblur Architecture: all Version: 1.1.1-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/biocore/deblur Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/deblur Vcs-Git: https://salsa.debian.org/med-team/deblur.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest , sortmerna (>> 4~), vsearch, mafft Package-List: deblur deb science optional arch=all Checksums-Sha1: e6e86817af379b29fbed698573f3463d154a16bf 3901272 deblur_1.1.1.orig.tar.gz 247075b786e2197aaeb665288ceca1c65c0aa28a 3932 deblur_1.1.1-3.debian.tar.xz Checksums-Sha256: a4d60bde48de1619300a20e689cf80f367c45649f73ce7d196fcfe2db70d3d40 3901272 deblur_1.1.1.orig.tar.gz 36b2440202fb1375ef3f1d28c5ee3674e33358a22baf29e1a892b5a99dae3746 3932 deblur_1.1.1-3.debian.tar.xz Files: 38ee00ccde82293c5f122ee36dc4bf25 3901272 deblur_1.1.1.orig.tar.gz 0e5518e031fbc55727378fc112e91d9d 3932 deblur_1.1.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmddwmIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBr2Yg//XO4Bd/lCp2j/cSqSOV2/xz6xM5ZvYpld 6+JJKK8KbkAj8xZDgwkwLEYzMqZrVIu+YzdBtkUsoVXC+bABZRAMSSoUIa89nbKD l8R/MnC2tl7sV1zFCDzN0IaS60lZL3dYKXfaXqOGC1gNovxZiNVFvhJEY+4MV3VG tNjkGLcHk2HzRjXP0XOnjeSpOthuFt4m/QpTzpgMG1uneiHVwpomWqYnZU3dnhgi A0iPKqF/bZ41PlXRt/TvsS+mO7daySGzQV/hV+D6aIcQdl93oyZ1XOC9RCoHdNZc 7mMYkZTm84lQNJn/bQQnI3caLZ7ImiUcfS89sT6N+vHcdpN2+ucr/YDEuNucG2uu R0tWARsnHcl/EFPaltn6/4uFwme7fB9qvzgXxIyv9TiVvuTcCzVjxez/LF+FZVnI AZhqudzVVLby/r4G/DP5WWNDt8ZHSUbwiqtEoS4DkrKBWwu687a80/8mkJeUOnzI DMZ4jsi5qw9NjAnxEE11ogmkkdKBsyQilhaW55dZVyegOZpuqjYjVilat0VCEwr8 TEWiJjNxa4wMMMSSfqxz8cbJZbCHyTaXYol3mKZR9qmiEYZnWXbFZFwe4CcqS6DK hyXmYUQHPirPcxc96mzhRQxbCZ2CAqeyWjTOfZIuKu6+3EDqMlejdb9nxGr1EHyz bSWoVSG933g= =sOuJ -----END PGP SIGNATURE----- Fri Dec 20 05:19:03 UTC 2024 I: Checking whether the package is not for us Fri Dec 20 05:19:03 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Dec 20 05:19:03 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Dec 20 05:20:51 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 21 23:42:06 -12 2026 I: pbuilder-time-stamp: 1769082126 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [deblur_1.1.1-3.dsc] I: copying [./deblur_1.1.1.orig.tar.gz] I: copying [./deblur_1.1.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 14 17:37:38 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./deblur_1.1.1-3.dsc: no acceptable signature found dpkg-source: info: extracting deblur in deblur-1.1.1 dpkg-source: info: unpacking deblur_1.1.1.orig.tar.gz dpkg-source: info: unpacking deblur_1.1.1-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1229302/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a7926233b45242df9c008c57e03de351' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1229302' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/pbuilderrc_um0d --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/b1 --logfile b1/build.log deblur_1.1.1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1229302/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest, sortmerna (>> 4~), vsearch, mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19959 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on sortmerna (>> 4~); however: Package sortmerna is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgflags2.2{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librocksdb9.3{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsnappy1v5{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sortmerna{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-pygments python3-tables ruby wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 89.6 MB of archives. After unpacking 458 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libgflags2.2 amd64 2.2.2-2 [83.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5+b1 [1254 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5+b1 [64.2 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b2 [10.1 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 librocksdb9.3 amd64 9.3.1-1+b1 [3746 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b1 [21.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.12.1-1 [1468 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.16-1+b2 [176 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-5.1+b2 [177 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b1 [2500 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4 [1508 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 sortmerna amd64 4.3.7-2 [586 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 vsearch amd64 2.29.1-1 [433 kB] Fetched 89.6 MB in 7s (13.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19959 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20279 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21342 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. 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Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../32-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../33-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../34-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../35-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../36-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../37-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../38-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../39-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../40-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../41-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../42-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../43-dh-python_6.20241217_all.deb ... Unpacking dh-python (6.20241217) ... Selecting previously unselected package libaec0:amd64. 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Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 22 11:43:00 UTC 2026. Universal Time is now: Thu Jan 22 11:43:00 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up liblzf1:amd64 (3.6-4+b2) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libssw0:amd64 (1.1-15+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up librocksdb9.3 (9.3.1-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-5+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up sortmerna (4.3.7-2) ... Setting up python3-tz (2024.2-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-hdmedians (0.14.2-5.1+b2) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b1) ... Setting up dh-python (6.20241217) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-h5py-serial (3.12.1-1) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-h5py (3.12.1-1) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-biom-format (2.1.16-1+b2) ... Setting up python3-skbio (0.6.2-4) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../deblur_1.1.1-3_source.changes dpkg-buildpackage: info: source package deblur dpkg-buildpackage: info: source version 1.1.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.12 copying and adjusting scripts/deblur -> build/scripts-3.12 changing mode of build/scripts-3.12/deblur from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build; python3.12 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 1.28s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/deblur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_workflow.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_sequence.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_script.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_support_files.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/workflow.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/parallel_deblur.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating deblur.egg-info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt writing manifest file 'deblur.egg-info/SOURCES.txt' reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin copying build/scripts-3.12/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'deblur' in '../deblur_1.1.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../deblur_1.1.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../deblur_1.1.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1229302 and its subdirectories I: Current time: Wed Jan 21 23:43:50 -12 2026 I: pbuilder-time-stamp: 1769082230 Fri Dec 20 05:20:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Dec 20 05:20:52 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Dec 20 05:30:45 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Dec 20 05:30:46 UTC 2024 I: deblur_1.1.1-3_amd64.changes: Format: 1.8 Date: Sat, 28 Sep 2024 01:16:42 +0200 Source: deblur Binary: deblur Architecture: all Version: 1.1.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: deblur - deconvolution for Illumina amplicon sequencing Changes: deblur (1.1.1-3) unstable; urgency=medium . * Team upload. * Replace python3-nose usage with python3-pytest, enable half of the tests. (see "Tests are disable until the sortmerna situation is fixed") Checksums-Sha1: 1e9ee4e48784b906f745df0f759756f63e92b822 1970408 deblur_1.1.1-3_all.deb 056ca6658baee0284e9168f1f9ab4762a2b3d480 7831 deblur_1.1.1-3_amd64.buildinfo Checksums-Sha256: d2736440897289396a2cd6ec1b942e0c8af126949d8bb9b78a7d991efc289bd0 1970408 deblur_1.1.1-3_all.deb 50d064c11b87c1f83f4dca394791f0c040d70c6022edd8b4c5905679c7005899 7831 deblur_1.1.1-3_amd64.buildinfo Files: fc4369f49fbe4ee3137d90a038f5b9c1 1970408 science optional deblur_1.1.1-3_all.deb 87f2c9af7665178e707abbc4c430f45d 7831 science optional deblur_1.1.1-3_amd64.buildinfo Fri Dec 20 05:30:48 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_10-25875.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/deblur_1.1.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/deblur_1.1.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/deblur_1.1.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/b1/deblur_1.1.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.9uWFMmZ9/b2/deblur_1.1.1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.342s) 0.342s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 631ms CPU time consumed: 631ms Fri Dec 20 05:30:48 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 20 05:30:48 UTC 2024 I: deblur from trixie built successfully and reproducibly on amd64. Fri Dec 20 05:30:49 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Dec 20 05:30:49 UTC 2024 I: Submitting 12K b1/deblur_1.1.1-3_amd64.buildinfo.asc Fri Dec 20 05:30:50 UTC 2024 I: Submitting 12K b2/deblur_1.1.1-3_amd64.buildinfo.asc Fri Dec 20 05:30:51 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 20 05:30:51 UTC 2024 I: Done submitting .buildinfo files. Fri Dec 20 05:30:51 UTC 2024 I: Removing signed deblur_1.1.1-3_amd64.buildinfo.asc files: removed './b1/deblur_1.1.1-3_amd64.buildinfo.asc' removed './b2/deblur_1.1.1-3_amd64.buildinfo.asc'