Thu Dec 5 13:49:07 UTC 2024 I: starting to build daligner/trixie/amd64 on jenkins on '2024-12-05 13:48' Thu Dec 5 13:49:07 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_18/24797/console.log Thu Dec 5 13:49:07 UTC 2024 I: Downloading source for trixie/daligner=1.0+git20240119.335105d-3 --2024-12-05 13:49:07-- http://deb.debian.org/debian/pool/main/d/daligner/daligner_1.0%2bgit20240119.335105d-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2287 (2.2K) [text/prs.lines.tag] Saving to: ‘daligner_1.0+git20240119.335105d-3.dsc’ 0K .. 100% 282M=0s 2024-12-05 13:49:07 (282 MB/s) - ‘daligner_1.0+git20240119.335105d-3.dsc’ saved [2287/2287] Thu Dec 5 13:49:07 UTC 2024 I: daligner_1.0+git20240119.335105d-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: daligner Binary: daligner Architecture: any Version: 1.0+git20240119.335105d-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://dazzlerblog.wordpress.com Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/daligner Vcs-Git: https://salsa.debian.org/med-team/daligner.git Testsuite: autopkgtest Testsuite-Triggers: dazzdb Build-Depends: debhelper-compat (= 13) Package-List: daligner deb science optional arch=any Checksums-Sha1: c8c497f24b3b4df81b92b7c32558949c7196a298 128472 daligner_1.0+git20240119.335105d.orig.tar.xz d83b87746857e14a5d7f1cd5527b5467b4324fa2 6660 daligner_1.0+git20240119.335105d-3.debian.tar.xz Checksums-Sha256: a222e15f650e878dbb3395a95b896a88b83f529830e858945549f17c286622b9 128472 daligner_1.0+git20240119.335105d.orig.tar.xz a8354ecc485718a48fe0448a6f70f393fc191d082d6c59eabfa781443f63dc6f 6660 daligner_1.0+git20240119.335105d-3.debian.tar.xz Files: 0d7b712d302f1308d3f021e247c49065 128472 daligner_1.0+git20240119.335105d.orig.tar.xz 4ceab3dd0c1fe15c0124ebbcaead4e0e 6660 daligner_1.0+git20240119.335105d-3.debian.tar.xz Dgit: e54816c7eec1edc38760e9b623bcf67634916e8b debian archive/debian/1.0+git20240119.335105d-3 https://git.dgit.debian.org/daligner -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaFuRAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoCUg/6AjvsSjuzwVyOW89h3h7t49lMecBK 2sf+bdo1XnHc8eldjImat3TNWP7E1j19S/SDq5e9SyDGv1qkshb7uvfAuFlA6YRd nlydxTfla0bRE37jo7iKYhpMk6G/6qyumIcV+/r5ZBotzdDDVF7D9ddYEnX4vZWf tQkxdmdNjUVKcFKgEJl+j0bVRPQdXlefqOO4HxXcSqHeCXxo7aSnxdCnQzp+P6LU SecXX/sp85u861ib1/28+U4cvyGqKN5p2/7e2nETwfXgJPbBpVxYG3AMqPNn1hwa ZjAFHegsQZdAdaXfyMwcm2QrJvRwWeFzrWX6rBNHsvUQPGIhA01RJ6YBkQfHHbsF hzV6SZvcM6Sr6Vm7/11FhwHQmnWiSae7lKFSYssOsrMUZJNtf4cAfr0kE3vdHK2Q 29tyF1xa7zZ0RSMWC3UXZ0q80wDok/aL8d9gXDCVyWWJwIDg21f8ttFqWkynxK6k zQgyqx1su3uhXpzo+IGCy+bY1w6zQLH9gGMyoD0INx+y0hI38TlC3xJZ9RAGlNYu bmCcMcikj20H+vdXVl+N9SejJ+eAthA/5jPto4hsGac0VE5WHVleNK2PlXKe59hP 7vg5wBDPJVHh2VhYAAu0tbh566WafdYcWaJfgjez1NmQMLkL+hyNEfQvFABbqCQS QKFSpF3VZeaLxFc= =saI+ -----END PGP SIGNATURE----- Thu Dec 5 13:49:07 UTC 2024 I: Checking whether the package is not for us Thu Dec 5 13:49:07 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Dec 5 13:49:07 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Dec 5 13:51:41 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 7 08:12:13 -12 2026 I: pbuilder-time-stamp: 1767816733 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [daligner_1.0+git20240119.335105d-3.dsc] I: copying [./daligner_1.0+git20240119.335105d.orig.tar.xz] I: copying [./daligner_1.0+git20240119.335105d-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 3 20:48:16 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./daligner_1.0+git20240119.335105d-3.dsc: no acceptable signature found dpkg-source: info: extracting daligner in daligner-1.0+git20240119.335105d dpkg-source: info: unpacking daligner_1.0+git20240119.335105d.orig.tar.xz dpkg-source: info: unpacking daligner_1.0+git20240119.335105d-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cflags.patch dpkg-source: info: applying lddflags.patch dpkg-source: info: applying destdir-install.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying cppflags.patch dpkg-source: info: applying fix-missing-include.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/110481/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1193e4819afc481e894c4bc41d817850' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='110481' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/pbuilderrc_5uDG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/b1 --logfile b1/build.log daligner_1.0+git20240119.335105d-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/110481/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 7s (2652 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/daligner-1.0+git20240119.335105d/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../daligner_1.0+git20240119.335105d-3_source.changes dpkg-buildpackage: info: source package daligner dpkg-buildpackage: info: source version 1.0+git20240119.335105d-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' rm -f daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA rm -fr *.dSYM rm -f daligner.tar.gz make[1]: Leaving directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o HPC.daligner HPC.daligner.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAsort LAsort.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAmerge LAmerge.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAsplit LAsplit.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAcat LAcat.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAshow LAshow.c align.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LA2ONE LA2ONE.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAcheck LAcheck.c align.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o ONE2LA ONE2LA.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now ONE2LA.c: In function 'main': ONE2LA.c:30:20: warning: variable 'small' set but not used [-Wunused-but-set-variable] 30 | int tspace, small, tbytes; | ^~~~~ LAshow.c: In function 'main': LAshow.c:415:36: warning: variable 'lhalf' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; | ^~~~~ LAshow.c:415:30: warning: variable 'seen' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; | ^~~~ LAshow.c:415:23: warning: variable 'match' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; | ^~~~~ LAshow.c:415:16: warning: variable 'blast' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; | ^~~~~ LAshow.c:743:5: warning: 'bmap' may be used uninitialized [-Wmaybe-uninitialized] 743 | free(bmap); | ^~~~~~~~~~ LAshow.c:55:11: note: 'bmap' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~ LAshow.c:549:25: warning: 'blen' may be used uninitialized [-Wmaybe-uninitialized] 549 | blens = blen[bread]; | ^ LAshow.c:55:18: note: 'blen' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~ LAshow.c:588:40: warning: 'bctg' may be used uninitialized [-Wmaybe-uninitialized] 588 | printf(".%0*d",bc_wide,bctg[bread]+1); | ^ LAshow.c:55:25: note: 'bctg' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~ LAshow.c:448:19: warning: 'nbscaff' may be used uninitialized [-Wmaybe-uninitialized] 448 | { br_wide = Number_Digits((int64) nbscaff); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:55:31: note: 'nbscaff' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~~~~ LAshow.c:449:19: warning: 'bmaxlen' may be used uninitialized [-Wmaybe-uninitialized] 449 | bi_wide = Number_Digits((int64) bmaxlen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:55:40: note: 'bmaxlen' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~~~~ LAshow.c:450:19: warning: 'bctgmax' may be used uninitialized [-Wmaybe-uninitialized] 450 | bc_wide = Number_Digits((int64) bctgmax); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:55:49: note: 'bctgmax' was declared here 55 | int *bmap, *blen, *bctg, nbscaff, bmaxlen, bctgmax; | ^~~~~~~ LAshow.c:744:3: warning: 'amap' may be used uninitialized [-Wmaybe-uninitialized] 744 | free(amap); | ^~~~~~~~~~ LAshow.c:54:11: note: 'amap' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~ LAshow.c:541:25: warning: 'alen' may be used uninitialized [-Wmaybe-uninitialized] 541 | alens = alen[aread]; | ^ LAshow.c:54:18: note: 'alen' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~ LAshow.c:581:40: warning: 'actg' may be used uninitialized [-Wmaybe-uninitialized] 581 | printf(".%0*d",ac_wide,actg[aread]+1); | ^ LAshow.c:54:25: note: 'actg' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~ LAshow.c:439:19: warning: 'nascaff' may be used uninitialized [-Wmaybe-uninitialized] 439 | { ar_wide = Number_Digits((int64) nascaff); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:54:31: note: 'nascaff' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~~~~ LAshow.c:440:19: warning: 'amaxlen' may be used uninitialized [-Wmaybe-uninitialized] 440 | ai_wide = Number_Digits((int64) amaxlen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:54:40: note: 'amaxlen' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~~~~ LAshow.c:441:19: warning: 'actgmax' may be used uninitialized [-Wmaybe-uninitialized] 441 | ac_wide = Number_Digits((int64) actgmax); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAshow.c:54:49: note: 'actgmax' was declared here 54 | int *amap, *alen, *actg, nascaff, amaxlen, actgmax; | ^~~~~~~ filter.c: In function 'report_thread': filter.c:2155:23: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] 2155 | ; | ^ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:392:3: note: in expansion of macro 'assert' 392 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:393:3: note: in expansion of macro 'assert' 393 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:945:3: note: in expansion of macro 'assert' 945 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:946:3: note: in expansion of macro 'assert' 946 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1158:3: note: in expansion of macro 'assert' 1158 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1760:3: note: in expansion of macro 'assert' 1760 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'addReference': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1811:3: note: in expansion of macro 'assert' 1811 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1886:3: note: in expansion of macro 'assert' 1886 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1887:3: note: in expansion of macro 'assert' 1887 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'oneWriteLine': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2029:3: note: in expansion of macro 'assert' 2029 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2030:3: note: in expansion of macro 'assert' 2030 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2033:3: note: in expansion of macro 'assert' 2033 | assert (li) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2040:7: note: in expansion of macro 'assert' 2040 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2488:3: note: in expansion of macro 'assert' 2488 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3490:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3490 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3491:9: note: here 3491 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3502:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3502 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3503:9: note: here 3503 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3488:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3499:5: note: here 3499 | case 4: | ^~~~ ONElib.c: In function 'ltfRead': ONElib.c:3564:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 3564 | return val ; | ^~~ ONElib.c:3544:7: note: 'val' was declared here 3544 | I64 val ; | ^~~ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:392:3: note: in expansion of macro 'assert' 392 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:393:3: note: in expansion of macro 'assert' 393 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:945:3: note: in expansion of macro 'assert' 945 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:946:3: note: in expansion of macro 'assert' 946 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1158:3: note: in expansion of macro 'assert' 1158 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1760:3: note: in expansion of macro 'assert' 1760 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'addReference': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1811:3: note: in expansion of macro 'assert' 1811 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1886:3: note: in expansion of macro 'assert' 1886 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:1887:3: note: in expansion of macro 'assert' 1887 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'oneWriteLine': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2029:3: note: in expansion of macro 'assert' 2029 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2030:3: note: in expansion of macro 'assert' 2030 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2033:3: note: in expansion of macro 'assert' 2033 | assert (li) ; | ^~~~~~ ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2040:7: note: in expansion of macro 'assert' 2040 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 | ^ ONElib.c:2488:3: note: in expansion of macro 'assert' 2488 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3490:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3490 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3491:9: note: here 3491 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3502:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3502 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3503:9: note: here 3503 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3488:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3499:5: note: here 3499 | case 4: | ^~~~ ONElib.c: In function 'ltfRead': ONElib.c:3564:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 3564 | return val ; | ^~~ ONElib.c:3544:7: note: 'val' was declared here 3544 | I64 val ; | ^~~ ONElib.c: In function 'oneFileOpenWriteFrom': ONElib.c:395:33: warning: '%ld' directive writing between 1 and 19 bytes into a region of size between 7 and 25 [-Wformat-overflow=] 395 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~ In function 'oneSchemaCreateDynamic', inlined from 'oneFileOpenWriteFrom' at ONElib.c:1657:20: ONElib.c:395:20: note: directive argument in the range [0, 9223372036854775805] 395 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from ONElib.c:22: In function 'sprintf', inlined from 'oneSchemaCreateDynamic' at ONElib.c:395:5, inlined from 'oneFileOpenWriteFrom' at ONElib.c:1657:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 11 or more bytes (assuming 47) into a destination of size 32 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ONElib.c: In function 'oneFileOpenWriteFrom': ONElib.c:395:33: warning: '%ld' directive writing between 1 and 19 bytes into a region of size between 7 and 25 [-Wformat-overflow=] 395 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~ In function 'oneSchemaCreateDynamic', inlined from 'oneFileOpenWriteFrom' at ONElib.c:1657:20: ONElib.c:395:20: note: directive argument in the range [0, 9223372036854775805] 395 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from ONElib.c:22: In function 'sprintf', inlined from 'oneSchemaCreateDynamic' at ONElib.c:395:5, inlined from 'oneFileOpenWriteFrom' at ONElib.c:1657:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 11 or more bytes (assuming 47) into a destination of size 32 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' dh_auto_install make -j42 install DESTDIR=/build/reproducible-path/daligner-1.0\+git20240119.335105d/debian/daligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' install -d /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/bin install daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/bin make[2]: Leaving directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' mkdir -p /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/share/man/man1 for command in /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/bin/*; \ do \ if [ $(basename $command) != daligner ] ; \ then \ ln -s daligner.1 \ /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/share/man/man1/$(basename $command).1 ; \ fi; \ done make[1]: Leaving directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'daligner' in '../daligner_1.0+git20240119.335105d-3_amd64.deb'. dpkg-deb: building package 'daligner-dbgsym' in '../daligner-dbgsym_1.0+git20240119.335105d-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../daligner_1.0+git20240119.335105d-3_amd64.buildinfo dpkg-genchanges --build=binary -O../daligner_1.0+git20240119.335105d-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/110481 and its subdirectories I: Current time: Wed Jan 7 08:14:40 -12 2026 I: pbuilder-time-stamp: 1767816881 Thu Dec 5 13:51:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Dec 5 13:51:42 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Dec 5 13:54:08 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Dec 5 13:54:08 UTC 2024 I: daligner_1.0+git20240119.335105d-3_amd64.changes: Format: 1.8 Date: Wed, 03 Jul 2024 22:45:58 +0200 Source: daligner Binary: daligner daligner-dbgsym Architecture: amd64 Version: 1.0+git20240119.335105d-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: daligner - local alignment discovery between long nucleotide sequencing read Closes: 1074900 Changes: daligner (1.0+git20240119.335105d-3) unstable; urgency=medium . * d/control: declare compliance to standards version 4.7.0. * gcc-14.patch: fix build failure with gcc-14. (Closes: #1074900) Checksums-Sha1: 91b511fc9f3d656ee56445e1a6451f9ee5a8a786 1743736 daligner-dbgsym_1.0+git20240119.335105d-3_amd64.deb 451b762fa311f500d11a7b04f39657d104d33671 5183 daligner_1.0+git20240119.335105d-3_amd64.buildinfo 1859b57b3dd08e6465faace1b68c6cf27dbd9224 242396 daligner_1.0+git20240119.335105d-3_amd64.deb Checksums-Sha256: 22cfbf43f2024b256097e0ae3f85647e147ceba5369049cbdb91d2779b5a74ec 1743736 daligner-dbgsym_1.0+git20240119.335105d-3_amd64.deb 2db60d646fd98dc24453df7ffaf9bed9fd8b9ee8ab5475fbfe43ca58f2806e13 5183 daligner_1.0+git20240119.335105d-3_amd64.buildinfo 6c2ef16267a2cf38be142e29908582e4ddac058ff3c6250581c8e458704fb423 242396 daligner_1.0+git20240119.335105d-3_amd64.deb Files: b10f0a4c62d08b5b21ab5e05bfed501c 1743736 debug optional daligner-dbgsym_1.0+git20240119.335105d-3_amd64.deb b6b29b4d31e99270b5d05e821f9b40eb 5183 science optional daligner_1.0+git20240119.335105d-3_amd64.buildinfo a9853e7928161c517a9be47544ff6c9c 242396 science optional daligner_1.0+git20240119.335105d-3_amd64.deb Thu Dec 5 13:54:09 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_18-24797.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/daligner_1.0+git20240119.335105d-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/daligner_1.0+git20240119.335105d-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/daligner_1.0+git20240119.335105d-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/b1/daligner_1.0+git20240119.335105d-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.e3HEDAJf/b2/daligner_1.0+git20240119.335105d-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.466s) 0.466s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 836ms CPU time consumed: 835ms Thu Dec 5 13:54:10 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 5 13:54:10 UTC 2024 I: daligner from trixie built successfully and reproducibly on amd64. Thu Dec 5 13:54:11 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Dec 5 13:54:11 UTC 2024 I: Submitting 8.0K b1/daligner_1.0+git20240119.335105d-3_amd64.buildinfo.asc Thu Dec 5 13:54:12 UTC 2024 I: Submitting 8.0K b2/daligner_1.0+git20240119.335105d-3_amd64.buildinfo.asc Thu Dec 5 13:54:13 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 5 13:54:13 UTC 2024 I: Done submitting .buildinfo files. Thu Dec 5 13:54:13 UTC 2024 I: Removing signed daligner_1.0+git20240119.335105d-3_amd64.buildinfo.asc files: removed './b1/daligner_1.0+git20240119.335105d-3_amd64.buildinfo.asc' removed './b2/daligner_1.0+git20240119.335105d-3_amd64.buildinfo.asc'