Sat May 11 08:59:13 UTC 2024 I: starting to build cyvcf2/trixie/amd64 on jenkins on '2024-05-11 08:59' Sat May 11 08:59:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/7105/console.log Sat May 11 08:59:13 UTC 2024 I: Downloading source for trixie/cyvcf2=0.30.28-1 --2024-05-11 08:59:13-- http://deb.debian.org/debian/pool/main/c/cyvcf2/cyvcf2_0.30.28-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2426 (2.4K) [text/prs.lines.tag] Saving to: ‘cyvcf2_0.30.28-1.dsc’ 0K .. 100% 311M=0s 2024-05-11 08:59:13 (311 MB/s) - ‘cyvcf2_0.30.28-1.dsc’ saved [2426/2426] Sat May 11 08:59:13 UTC 2024 I: cyvcf2_0.30.28-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cyvcf2 Binary: python3-cyvcf2 Architecture: any Version: 0.30.28-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Liubov Chuprikova , Homepage: https://github.com/brentp/cyvcf2 Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/cyvcf2 Vcs-Git: https://salsa.debian.org/med-team/cyvcf2.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3-legacy, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man Package-List: python3-cyvcf2 deb python optional arch=any Checksums-Sha1: 5eeeaa59118f70917a816c2b3e39c00f8e4e4303 420359 cyvcf2_0.30.28.orig.tar.gz 75a2b6121c1978ab13bcd269aa0363c1a344c842 6612 cyvcf2_0.30.28-1.debian.tar.xz Checksums-Sha256: 5b54b618e7b80e6b7e8cafd869f110c81b477f1899b2471473832674b942c7cd 420359 cyvcf2_0.30.28.orig.tar.gz fdbc1a80bd86971863cf4e6db32a3df5bbc7bce486514656da46d3ecacf10a2e 6612 cyvcf2_0.30.28-1.debian.tar.xz Files: c64b42c0f0b858eba53bc1391c144e68 420359 cyvcf2_0.30.28.orig.tar.gz ccc7b4f9b83b11236d98f7fcd0307fd9 6612 cyvcf2_0.30.28-1.debian.tar.xz Dgit: 8fd5728b5f01e48cb0e6cabcddec43e1ccc15a2e debian archive/debian/0.30.28-1 https://git.dgit.debian.org/cyvcf2 -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmXRv48ACgkQeTz2fo8N EdralhAAgSA7iCljaXSpfYMExurqMnFpsq/KIgPn9/NZx7E2Brhadn5W9x7haHYf vexcMNv2UwgZgOzTNP5rbYWF+6/m5kFpJHPdBLcQMqS0Z3sYP4szAWhPataPam2T CdL0nhPRqLnjkowJsUkbcHHbvo+7aFBUrNR6JHqpDk4fG+zQkhaczwTGAeJyYfCU oLrTNJEizkkzghowY/7b7MJi/hdeZFZObdJ4a4V0yUdYPdyUO2/aEgMvj8DzAfBO lqBYYtmIJ0ff5G0nlErwms1RXDJY7DFlJt6Y4YPD2YfRMYym0hzoRHHLmv7ZWsY/ 7KVAZYihoTbtwBSjGkUTJBl2zhPopFWKKXbv4eb3gR9MOsMnnW7fcGovKsV5vgSw /JHuxkLkcEYYSyzDTHm6opGtUnkUz0C6hvgoQa3Mg1U+7a/GXRtrT/s3ZJt7ig2k ZWKsfpFySDFRXj2lPwVbSa/V6KsSdtGu1CnFlhmbEi3f78mIHnRheZ4U4De6Kx2x EfVg2enYasiTFq4K8w+DeZEUvHxtmZ2YSLHubhbv516iP9CG1M5lDwD7qsXvHG0l nr79hWt/ipjm6U5F0IutNu2ZmHmpnEgrjtaKohs20DMAlW7f6QNF6UlCf/NQzL8J /hJcOrQcPCOZE1HVQuWfl1z38NkrKeL6JdR4CLITrXtucp2g3qQ= =A5jh -----END PGP SIGNATURE----- Sat May 11 08:59:13 UTC 2024 I: Checking whether the package is not for us Sat May 11 08:59:13 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat May 11 08:59:13 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat May 11 09:02:17 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 13 03:22:15 -12 2025 I: pbuilder-time-stamp: 1749828135 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.30.28-1.dsc] I: copying [./cyvcf2_0.30.28.orig.tar.gz] I: copying [./cyvcf2_0.30.28-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 18 08:27:59 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.30.28-1.dsc: no acceptable signature found dpkg-source: info: extracting cyvcf2 in cyvcf2-0.30.28 dpkg-source: info: unpacking cyvcf2_0.30.28.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.30.28-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3718927/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0ab48c3f4b4e43d9905bfd6b92fb6236' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3718927' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/pbuilderrc_y5R3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/b1 --logfile b1/build.log cyvcf2_0.30.28-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3718927/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3-legacy, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3-legacy; however: Package cython3-legacy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3-legacy{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-dev{a} python3-distutils{a} python3-humanfriendly{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-zombie-imp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After unpacking 300 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 cython3-legacy amd64 0.29.37-2 [3054 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.7.1-5 [538 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.19+ds-1.1+b1 [1667 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 93 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-humanfriendly all 10.0-5 [85.4 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Fetched 68.4 MB in 1s (116 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21021 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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Unpacking python3-distutils (3.12.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../38-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../39-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package help2man. Preparing to unpack .../40-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../41-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../42-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../43-libbz2-dev_1.0.8-5.1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-5.1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../44-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../45-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../46-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../47-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../48-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../49-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../50-libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../51-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../52-libldap-2.5-0_2.5.17+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../53-libnghttp2-14_1.61.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../54-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../55-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../56-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../57-libcurl3t64-gnutls_8.7.1-5_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.7.1-5) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../58-libcurl4-gnutls-dev_8.7.1-5_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.7.1-5) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../59-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) ... Selecting previously unselected package libdeflate-dev:amd64. 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Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package libpython3.11t64:amd64. Preparing to unpack .../72-libpython3.11t64_3.11.9-1_amd64.deb ... Unpacking libpython3.11t64:amd64 (3.11.9-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../73-libpython3.11-dev_3.11.9-1_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.9-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../74-libpython3-dev_3.11.8-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.8-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../75-libpython3.12-stdlib_3.12.3-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.3-1) ... Selecting previously unselected package libpython3.12t64:amd64. Preparing to unpack .../76-libpython3.12t64_3.12.3-1_amd64.deb ... Unpacking libpython3.12t64:amd64 (3.12.3-1) ... 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Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 13 15:23:19 UTC 2025. Universal Time is now: Fri Jun 13 15:23:19 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libssl-dev:amd64 (3.2.1-3) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdeflate-dev:amd64 (1.20-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:amd64 (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.7.1-5) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:amd64 (3.12.3-1) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libhts-dev:amd64 (1.19+ds-1.1+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-humanfriendly (10.0-5) ... Setting up libpython3-all-dev:amd64 (3.11.8-1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-zombie-imp (0.0.2-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.8-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up cython3-legacy (0.29.37-2) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cyvcf2-0.30.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.30.28-1_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.30.28-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cyvcf2-0.30.28/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running clean removing '/build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.30.28' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-cyvcf2.substvars debian/files rm -fr -- debian/python3-cyvcf2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.30.28' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/cyvcf2 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:791: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/cyvcf2 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.11 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-311/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:791: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/python3/dist-packages/numpy/core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.11 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-311/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.30.28=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-311/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.30.28' echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually for tdir in .pybuild/cpython3_* ; do \ cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ done dh_auto_test pybuild --test --test-pytest -i python{version} -p "3.12 3.11" I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.30.28 configfile: setup.cfg collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.21s ============================== I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.30.28 configfile: setup.cfg collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.22s ============================== rm -fr -- /tmp/dh-xdg-rundir-bk3Ylx2M # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.30.28' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-cyvcf2.substvars rm -fr -- debian/.debhelper/generated/python3-cyvcf2/ debian/python3-cyvcf2/ debian/tmp/ dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2 pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2 I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.30.28.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-311.pyc -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.30.28/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/cli.py to cli.cpython-311.pyc byte-compiling /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__main__.py to __main__.cpython-311.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2-0.30.28.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/bin rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.30.28' dh_numpy3 mv debian/python3-cyvcf2.substvars.new debian/python3-cyvcf2.substvars dh_install make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.30.28' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/copyright debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/.debhelper/generated/python3-cyvcf2/dh_installchangelogs.dch.trimmed debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.30.28' PATH=$PATH:/build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/reproducible-path/cyvcf2-0.30.28/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.30.28 cyvcf2 > debian/cyvcf2.1 dh_installman install -m0755 -d debian/python3-cyvcf2/usr/share/man/man1/ install -p -m0644 ./debian/cyvcf2.1 debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 mv debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1.dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 chmod 0644 -- debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.30.28' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=cyvcf2, binary packages=['python3-cyvcf2'] D: dh_python3 dh_python3:204: processing package python3-cyvcf2... D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.11/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.12/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-cyvcf2 details = {'requires.txt': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.30.28.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.30.28.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cyvcf2 D: dh_python3 pydist:173: trying to find dependency for click (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for coloredlogs (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3:any', 'python3-coloredlogs', 'python3-numpy', 'python3 (<< 3.13)', 'python3 (>= 3.11~)', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 gzip -9nf usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 cd '/build/reproducible-path/cyvcf2-0.30.28' dh_fixperms -O--buildsystem=pybuild find debian/python3-cyvcf2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cyvcf2/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cyvcf2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cyvcf2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cyvcf2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -- debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug chmod 0644 -- debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/9a/f1026c46c445f51ac1601a244161d736a87020.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/9a/f1026c46c445f51ac1601a244161d736a87020.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/9a/f1026c46c445f51ac1601a244161d736a87020.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/7d/ef22bd30c3002e5948792bc2017ee729aced3b.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/7d/ef22bd30c3002e5948792bc2017ee729aced3b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/7d/ef22bd30c3002e5948792bc2017ee729aced3b.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cyvcf2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cyvcf2/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc ln -s python3-cyvcf2 debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc/python3-cyvcf2-dbgsym install -m0755 -d debian/.debhelper/python3-cyvcf2 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-311-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst cat debian/python3-cyvcf2.postinst.debhelper >> debian/python3-cyvcf2/DEBIAN/postinst chmod 0755 -- debian/python3-cyvcf2/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/prerm cat debian/python3-cyvcf2.prerm.debhelper >> debian/python3-cyvcf2/DEBIAN/prerm chmod 0755 -- debian/python3-cyvcf2/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN echo misc:Depends= >> debian/python3-cyvcf2.substvars echo misc:Pre-Depends= >> debian/python3-cyvcf2.substvars install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/.debhelper/python3-cyvcf2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cyvcf2-dbgsym "-DDepends=python3-cyvcf2 (= \${binary:Version})" "-DDescription=debug symbols for python3-cyvcf2" "-DBuild-Ids=7def22bd30c3002e5948792bc2017ee729aced3b 9af1026c46c445f51ac1601a244161d736a87020" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/python3-cyvcf2 chmod 0644 -- debian/python3-cyvcf2/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN cd debian/python3-cyvcf2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-cyvcf2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.30.28-1_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.30.28-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.30.28-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.30.28-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.30.28/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3718927 and its subdirectories I: Current time: Fri Jun 13 03:25:15 -12 2025 I: pbuilder-time-stamp: 1749828315 Sat May 11 09:02:17 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat May 11 09:02:17 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat May 11 09:11:21 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat May 11 09:11:22 UTC 2024 I: cyvcf2_0.30.28-1_amd64.changes: Format: 1.8 Date: Wed, 07 Feb 2024 11:37:34 +0100 Source: cyvcf2 Binary: python3-cyvcf2 python3-cyvcf2-dbgsym Architecture: amd64 Version: 0.30.28-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-cyvcf2 - VCF parser based on htslib (Python 3) Closes: 1058768 Changes: cyvcf2 (0.30.28-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #1058768 * Set CYVCF2_HTSLIB_MODE=EXTERNAL to build with Debian packaged htslib Checksums-Sha1: 6f6713f26132f7941afc3f72f174c2e2337184af 7882 cyvcf2_0.30.28-1_amd64.buildinfo 8c004ff6d32f60374815fb088960f48d008c4b66 2619308 python3-cyvcf2-dbgsym_0.30.28-1_amd64.deb b9a8ce0a5a2fa20c21d29bca7e2ab1167d4b0b29 1006760 python3-cyvcf2_0.30.28-1_amd64.deb Checksums-Sha256: 5a9981d2d736a86c3c03f9250b171434aafe307edc30c2e069a3feee7dd4affd 7882 cyvcf2_0.30.28-1_amd64.buildinfo 284c940cbc1af5f5206e46844258fdb0a7a208d7ea1c081e6b8ae881225a27bb 2619308 python3-cyvcf2-dbgsym_0.30.28-1_amd64.deb 31b2549f68ece85bbd72e20fd14e820ee7589f7b30b4211ee254fc7ee2645cb1 1006760 python3-cyvcf2_0.30.28-1_amd64.deb Files: e778fd91453acd90a757c3069317c64c 7882 science optional cyvcf2_0.30.28-1_amd64.buildinfo a76fb6abea48867fe4a10f183686a4dc 2619308 debug optional python3-cyvcf2-dbgsym_0.30.28-1_amd64.deb fc17a007d15e6b83ef4edc37082db489 1006760 python optional python3-cyvcf2_0.30.28-1_amd64.deb Sat May 11 09:11:23 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_22-7105.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/cyvcf2_0.30.28-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/cyvcf2_0.30.28-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/cyvcf2_0.30.28-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/b1/cyvcf2_0.30.28-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.iAlmHTJj/b2/cyvcf2_0.30.28-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.418s) 0.418s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.054s) 0.054s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 768ms CPU time consumed: 764ms Sat May 11 09:11:24 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 11 09:11:24 UTC 2024 I: cyvcf2 from trixie built successfully and reproducibly on amd64. Sat May 11 09:11:25 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 11 09:11:25 UTC 2024 I: Submitting 12K b1/cyvcf2_0.30.28-1_amd64.buildinfo.asc Sat May 11 09:11:26 UTC 2024 I: Submitting 12K b2/cyvcf2_0.30.28-1_amd64.buildinfo.asc Sat May 11 09:11:27 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 11 09:11:27 UTC 2024 I: Done submitting .buildinfo files. Sat May 11 09:11:27 UTC 2024 I: Removing signed cyvcf2_0.30.28-1_amd64.buildinfo.asc files: removed './b1/cyvcf2_0.30.28-1_amd64.buildinfo.asc' removed './b2/cyvcf2_0.30.28-1_amd64.buildinfo.asc'