Thu May 9 21:04:29 UTC 2024 I: starting to build covtobed/trixie/amd64 on jenkins on '2024-05-09 21:04' Thu May 9 21:04:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/19955/console.log Thu May 9 21:04:29 UTC 2024 I: Downloading source for trixie/covtobed=1.3.5+dfsg-2 --2024-05-09 21:04:29-- http://deb.debian.org/debian/pool/main/c/covtobed/covtobed_1.3.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1475 (1.4K) [text/prs.lines.tag] Saving to: ‘covtobed_1.3.5+dfsg-2.dsc’ 0K . 100% 169M=0s 2024-05-09 21:04:29 (169 MB/s) - ‘covtobed_1.3.5+dfsg-2.dsc’ saved [1475/1475] Thu May 9 21:04:29 UTC 2024 I: covtobed_1.3.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: covtobed Binary: covtobed, covtobed-examples Architecture: any all Version: 1.3.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/telatin/covtobed Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/covtobed Vcs-Git: https://salsa.debian.org/med-team/covtobed.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libbamtools-dev, zlib1g-dev Package-List: covtobed deb science optional arch=any covtobed-examples deb science optional arch=all Checksums-Sha1: 54c8ee5cf55135781150d16e5ec8188f92be7337 35281592 covtobed_1.3.5+dfsg.orig.tar.xz 3d0b42022a93d794409525272826f90dce924121 6348 covtobed_1.3.5+dfsg-2.debian.tar.xz Checksums-Sha256: df1af8451cd9e854d254c1bbb0fe6b15569f22721e39f05aa4fdf33045a722a3 35281592 covtobed_1.3.5+dfsg.orig.tar.xz 0b3a3e1409ec12fc2d0a7f5776e2f720e0b10d87f07811b8ddda8136e3cc2b8b 6348 covtobed_1.3.5+dfsg-2.debian.tar.xz Files: ab82374e23875306d9cde2eea0449cb9 35281592 covtobed_1.3.5+dfsg.orig.tar.xz b6be92456b1c49435e077b0e1d61c7c7 6348 covtobed_1.3.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZPzBZQAKCRAqJ5BL1yQ+ 2nnmAQDJqfxK+/MHVLgNFemIBzcdS2THuvKFNBD6d9QStbPM1gD/WSi/GQqndWff G3IYooupPPKxs//rc9ZVcLE9QV48AQg= =dJQs -----END PGP SIGNATURE----- Thu May 9 21:04:29 UTC 2024 I: Checking whether the package is not for us Thu May 9 21:04:29 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu May 9 21:04:29 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu May 9 21:06:08 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 9 09:04:31 -12 2024 I: pbuilder-time-stamp: 1715288671 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [covtobed_1.3.5+dfsg-2.dsc] I: copying [./covtobed_1.3.5+dfsg.orig.tar.xz] I: copying [./covtobed_1.3.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 9 19:03:01 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./covtobed_1.3.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting covtobed in covtobed-1.3.5+dfsg dpkg-source: info: unpacking covtobed_1.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking covtobed_1.3.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_use_system_installed_binary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2505612/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c4e7aa8d7c4d4d9892f55225cf9a327c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2505612' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/pbuilderrc_eKf1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/b1 --logfile b1/build.log covtobed_1.3.5+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2505612/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbamtools-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 76.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-5 [159 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libbamtools-dev amd64 2.5.2+dfsg-5 [221 kB] Fetched 20.3 MB in 0s (53.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libbamtools2.5.2:amd64. Preparing to unpack .../30-libbamtools2.5.2_2.5.2+dfsg-5_amd64.deb ... Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libbamtools-dev:amd64. Preparing to unpack .../32-libbamtools-dev_2.5.2+dfsg-5_amd64.deb ... Unpacking libbamtools-dev:amd64 (2.5.2+dfsg-5) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbamtools-dev:amd64 (2.5.2+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/covtobed-1.3.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../covtobed_1.3.5+dfsg-2_source.changes dpkg-buildpackage: info: source package covtobed dpkg-buildpackage: info: source version 1.3.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/covtobed-1.3.5+dfsg' mkdir build x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/covtobed-1.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++11 *.cpp -I/usr/include/bamtools/ -L/usr/lib/ -lbamtools -o build/covtobed -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/covtobed-1.3.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'covtobed' in '../covtobed_1.3.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'covtobed-dbgsym' in '../covtobed-dbgsym_1.3.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'covtobed-examples' in '../covtobed-examples_1.3.5+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../covtobed_1.3.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../covtobed_1.3.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2505612 and its subdirectories I: Current time: Thu May 9 09:06:07 -12 2024 I: pbuilder-time-stamp: 1715288767 Thu May 9 21:06:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu May 9 21:06:08 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu May 9 21:08:14 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu May 9 21:08:15 UTC 2024 I: covtobed_1.3.5+dfsg-2_amd64.changes: Format: 1.8 Date: Sun, 10 Sep 2023 00:28:25 +0530 Source: covtobed Binary: covtobed covtobed-dbgsym covtobed-examples Architecture: amd64 all Version: 1.3.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: covtobed - convert the coverage track from a BAM file into a BED file covtobed-examples - example data and scripts for mindthegap Closes: 1044576 1049525 Changes: covtobed (1.3.5+dfsg-2) unstable; urgency=medium . * Team Upload. * [skip ci] Remove myself from uploaders * Cleanup build/ directory in d/clean (Closes: #1044576, #1049525) * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: dbb40c488b890b78cf1a8661c6a925363473c42f 718104 covtobed-dbgsym_1.3.5+dfsg-2_amd64.deb 2a997db56d84ac3628fd25a1b8558540e265a2ca 34326324 covtobed-examples_1.3.5+dfsg-2_all.deb cc6d6a89ba0d2404216db633674af6fd2b7f0147 5573 covtobed_1.3.5+dfsg-2_amd64.buildinfo 218abc5e433472bb4e6cfa6e1256c2b0b822a63a 51088 covtobed_1.3.5+dfsg-2_amd64.deb Checksums-Sha256: 3a142f2438a3f09105ad442739dcb6b533d7a91826ed9c03c8fcb1ffeac46b56 718104 covtobed-dbgsym_1.3.5+dfsg-2_amd64.deb 04b29b777bc3741f83944b383d03d02e0a07b4d7dc49daaa33515615f1866462 34326324 covtobed-examples_1.3.5+dfsg-2_all.deb a3b340e581f995981a4588e886886938e0fdd37c65c566abac38bfdf2b6872df 5573 covtobed_1.3.5+dfsg-2_amd64.buildinfo 05854e98aa669abe5a50d08d7e0cc8f14b31338f4c01169a654f236f16a8e60a 51088 covtobed_1.3.5+dfsg-2_amd64.deb Files: e1fd0df30f0f28ec9c656f63877babd6 718104 debug optional covtobed-dbgsym_1.3.5+dfsg-2_amd64.deb 916e2391d631fcea52d18172e8df6914 34326324 science optional covtobed-examples_1.3.5+dfsg-2_all.deb 03f0d618640603cf31f1a06005dde6a8 5573 science optional covtobed_1.3.5+dfsg-2_amd64.buildinfo bb872f50e617d8fd53192a46283676ab 51088 science optional covtobed_1.3.5+dfsg-2_amd64.deb Thu May 9 21:08:16 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_27-19955.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/covtobed_1.3.5+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/covtobed_1.3.5+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/covtobed_1.3.5+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/b1/covtobed_1.3.5+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bIlRCyzX/b2/covtobed_1.3.5+dfsg-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.730s) 0.730s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.380s) 0.380s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.090s CPU time consumed: 1.090s Thu May 9 21:08:17 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 21:08:17 UTC 2024 I: covtobed from trixie built successfully and reproducibly on amd64. Thu May 9 21:08:19 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 21:08:19 UTC 2024 I: Submitting 8.0K b1/covtobed_1.3.5+dfsg-2_amd64.buildinfo.asc Thu May 9 21:08:20 UTC 2024 I: Submitting 8.0K b2/covtobed_1.3.5+dfsg-2_amd64.buildinfo.asc Thu May 9 21:08:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 21:08:21 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 21:08:21 UTC 2024 I: Removing signed covtobed_1.3.5+dfsg-2_amd64.buildinfo.asc files: removed './b1/covtobed_1.3.5+dfsg-2_amd64.buildinfo.asc' removed './b2/covtobed_1.3.5+dfsg-2_amd64.buildinfo.asc'