Thu Oct 24 15:00:22 UTC 2024 I: starting to build clipper/trixie/amd64 on jenkins on '2024-10-24 15:00' Thu Oct 24 15:00:22 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/22661/console.log Thu Oct 24 15:00:22 UTC 2024 I: Downloading source for trixie/clipper=2.1.20201109-2 --2024-10-24 15:00:22-- http://deb.debian.org/debian/pool/main/c/clipper/clipper_2.1.20201109-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2318 (2.3K) [text/prs.lines.tag] Saving to: ‘clipper_2.1.20201109-2.dsc’ 0K .. 100% 327M=0s 2024-10-24 15:00:22 (327 MB/s) - ‘clipper_2.1.20201109-2.dsc’ saved [2318/2318] Thu Oct 24 15:00:22 UTC 2024 I: clipper_2.1.20201109-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: clipper Binary: libclipper-dev, libclipper2, libclipper-doc Architecture: any all Version: 2.1.20201109-2 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Morten Kjeldgaard , Andrius Merkys Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/clipper Vcs-Git: https://salsa.debian.org/science-team/clipper.git Build-Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev Build-Depends-Indep: doxygen Package-List: libclipper-dev deb libdevel optional arch=any libclipper-doc deb doc optional arch=all libclipper2 deb libs optional arch=any Checksums-Sha1: 4b22318cb33d91b3a1ebe4e2afeddfad91255936 4266641 clipper_2.1.20201109.orig.tar.gz 9ea225f0a8ec1a343653055c82551778a70c7686 35916 clipper_2.1.20201109-2.debian.tar.xz Checksums-Sha256: 01276ebda309ece40a972560eec5a4f83b97ee37757675454ebe36083053e570 4266641 clipper_2.1.20201109.orig.tar.gz f319eabd1d27fcb312138223d5861ad2aad870e4c3d1f97f1d1529f94c503df4 35916 clipper_2.1.20201109-2.debian.tar.xz Files: 58cbd551d8a87d3fc9b01a2a634b2b3b 4266641 clipper_2.1.20201109.orig.tar.gz a217893493ddb9bc1e546a3d91552cd1 35916 clipper_2.1.20201109-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmSQblcSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHD9YQAJ4EqsQM7DROLvgPquU0EjWk8nQLsMr4 96Kkez46ZPA20lbJT+Jd6sOi0cNwOGINcnxV9V3Pwaj7PFhcFpaJwZBJa3G8jKzu 55tGhunEyRl8/Ik1k8gVsuEUetaR5dxOXIfQNzITh8+Gf45Q9MX1Tia4DsIgy47L U7cF08SNUj1gBhHUTN0DSz1fw0G0RtuN2Spv4euwj4ovTyopEDqilSSTa1cNuVud 6rtUm2lFc6H5OW4Tsn8CWhZYTSUlHuXd9TCRkVuoQ7BpDS/pPgGpGvqnovm4cJIQ Qig7hTfwEmB93y0o9FTyYjI697uxlLg6M7Rs1KBEdf4yBe3u6oxMRpyEERZrlIBj 10WUcFpcMKxu/Ft6VUG+3OwexCKHTbBkm9ZulT4JgGbvAdLlEZ3EpXGm/3MOUncv ANtP0tgxGLhA8ylFZnMKOwDrAIJTgADiGKnZsh5EgLC2t02psuzfuWgzdpE/08zs Qd2rmX3EDiSd53v4rL26H348++47jrvDJgnzHSZBM9SAYDlrFZYj/DeD0L+QdnQf 2ETtNdM7vrlVvndgDWUtiGYg7bn1gaprBNsPqSIskDO4RgcztOJjfpH+80139KHS 5e1DnAfKZb9aXkieB3yWTXAbBEZAmghPZe1U9phHtP1P+6FsU8cMaNN13TWCQ6ix HA5sRrSIHFNZ =FUBV -----END PGP SIGNATURE----- Thu Oct 24 15:00:22 UTC 2024 I: Checking whether the package is not for us Thu Oct 24 15:00:22 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Oct 24 15:00:22 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Oct 24 15:05:30 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 24 03:00:24 -12 2024 I: pbuilder-time-stamp: 1729782024 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clipper_2.1.20201109-2.dsc] I: copying [./clipper_2.1.20201109.orig.tar.gz] I: copying [./clipper_2.1.20201109-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 19 15:03:51 2023 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./clipper_2.1.20201109-2.dsc: no acceptable signature found dpkg-source: info: extracting clipper in clipper-2.1.20201109 dpkg-source: info: unpacking clipper_2.1.20201109.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20201109-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch dpkg-source: info: applying fix_pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2353374/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='af5f7ff46d4d4b279c1df9298b1a33f0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2353374' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/pbuilderrc_zrRb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/b1 --logfile b1/build.log clipper_2.1.20201109-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2353374/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 21880 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fftw-dev; however: Package fftw-dev is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev; however: Package libccp4-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on sfftw-dev; however: Package sfftw-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclang-cpp19{a} libclang1-19{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgfortran-14-dev{a} libgfortran5{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libicu72{a} libllvm17t64{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmmdb2-0{a} libmmdb2-dev{a} libmunge2{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpmix2t64{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1t64{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} ocl-icd-libopencl1{a} po-debconf{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 149 MB of archives. After unpacking 656 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.2-1 [26.0 MB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.2-1 [13.2 MB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libclang1-19 amd64 1:19.1.2-1 [7622 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b2 [5050 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 52.0-2 [61.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 52.0-2 [343 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 52.0-2 [70.2 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.3-2 [658 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-3 [510 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 52.0-2 [27.7 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 52.0-2 [43.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 fftw2 amd64 2.1.5-7 [251 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fftw-dev amd64 2.1.5-7 [290 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-6 [879 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-6 [11.7 MB] Get: 78 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-6 [11.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 81 http://deb.debian.org/debian trixie/main amd64 libccp4-data all 8.0.0-4 [62.7 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libccp4c0t64 amd64 8.0.0-4 [89.9 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libmmdb2-0 amd64 2.0.22-1+b1 [341 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libccp4f0t64 amd64 8.0.0-4 [208 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libccp4-dev amd64 8.0.0-4 [42.9 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libmmdb2-dev amd64 2.0.22-1+b1 [92.9 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 sfftw2 amd64 2.1.5-7 [253 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 sfftw-dev amd64 2.1.5-7 [293 kB] Fetched 149 MB in 6s (26.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21880 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_amd64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../29-libedit2_3.1-20240808-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20240808-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../30-libz3-4_4.8.12-3.1+b2_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../31-libllvm19_1%3a19.1.2-1_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.2-1) ... Selecting previously unselected package libclang-cpp19. Preparing to unpack .../32-libclang-cpp19_1%3a19.1.2-1_amd64.deb ... Unpacking libclang-cpp19 (1:19.1.2-1) ... Selecting previously unselected package libclang1-19. Preparing to unpack .../33-libclang1-19_1%3a19.1.2-1_amd64.deb ... Unpacking libclang1-19 (1:19.1.2-1) ... Selecting previously unselected package libfmt9:amd64. Preparing to unpack .../34-libfmt9_9.1.0+ds1-2_amd64.deb ... Unpacking libfmt9:amd64 (9.1.0+ds1-2) ... Selecting previously unselected package doxygen. Preparing to unpack .../35-doxygen_1.9.8+ds-2+b2_amd64.deb ... Unpacking doxygen (1.9.8+ds-2+b2) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. Preparing to unpack .../36-libevent-core-2.1-7t64_2.1.12-stable-10_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../37-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../38-libnl-3-200_3.7.0-0.3_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.3) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../39-libnl-route-3-200_3.7.0-0.3_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.3) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../40-libibverbs1_52.0-2_amd64.deb ... Unpacking libibverbs1:amd64 (52.0-2) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../41-ibverbs-providers_52.0-2_amd64.deb ... Unpacking ibverbs-providers:amd64 (52.0-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../42-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../43-libnuma1_2.0.18-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.18-1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../44-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) ... Selecting previously unselected package librdmacm1t64:amd64. Preparing to unpack .../45-librdmacm1t64_52.0-2_amd64.deb ... Unpacking librdmacm1t64:amd64 (52.0-2) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../46-libfabric1_1.17.0-3+b1_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3+b1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../47-libhwloc15_2.11.2-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.11.2-1) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../48-libmunge2_0.5.15-4_amd64.deb ... Unpacking libmunge2:amd64 (0.5.15-4) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../49-libpciaccess0_0.17-3+b1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../50-libxau6_1%3a1.0.9-1+b1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../51-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../52-libxcb1_1.17.0-2_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../53-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../54-libx11-6_2%3a1.8.7-1+b1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../55-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../56-libxnvctrl0_535.171.04-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../57-ocl-icd-libopencl1_2.3.2-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../58-libhwloc-plugins_2.11.2-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... Selecting previously unselected package libpmix2t64:amd64. Preparing to unpack .../59-libpmix2t64_5.0.3-2_amd64.deb ... Unpacking libpmix2t64:amd64 (5.0.3-2) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../60-libllvm17t64_1%3a17.0.6-18_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../61-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b1_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../62-libdrm-common_2.4.123-1_all.deb ... Unpacking libdrm-common (2.4.123-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../63-libdrm2_2.4.123-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../64-libdrm-amdgpu1_2.4.123-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../65-libhsakmt1_5.7.0-1_amd64.deb ... Unpacking libhsakmt1:amd64 (5.7.0-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../66-libhsa-runtime64-1_5.7.1-3_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (5.7.1-3) ... Selecting previously unselected package libamdhip64-5. Preparing to unpack .../67-libamdhip64-5_5.7.1-5_amd64.deb ... Unpacking libamdhip64-5 (5.7.1-5) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../68-libibumad3_52.0-2_amd64.deb ... Unpacking libibumad3:amd64 (52.0-2) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../69-libibmad5_52.0-2_amd64.deb ... Unpacking libibmad5:amd64 (52.0-2) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../70-libucx0_1.17.0+ds-3_amd64.deb ... Unpacking libucx0:amd64 (1.17.0+ds-3) ... Selecting previously unselected package libopenmpi3t64:amd64. Preparing to unpack .../71-libopenmpi3t64_4.1.6-13.3_amd64.deb ... Unpacking libopenmpi3t64:amd64 (4.1.6-13.3) ... Selecting previously unselected package fftw2. Preparing to unpack .../72-fftw2_2.1.5-7_amd64.deb ... Unpacking fftw2 (2.1.5-7) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../73-fftw-dev_2.1.5-7_amd64.deb ... Unpacking fftw-dev (2.1.5-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../74-libgfortran5_14.2.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-6) ... Selecting previously unselected package libgfortran-14-dev:amd64. Preparing to unpack .../75-libgfortran-14-dev_14.2.0-6_amd64.deb ... Unpacking libgfortran-14-dev:amd64 (14.2.0-6) ... Selecting previously unselected package gfortran-14-x86-64-linux-gnu. Preparing to unpack .../76-gfortran-14-x86-64-linux-gnu_14.2.0-6_amd64.deb ... Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-6) ... Selecting previously unselected package gfortran-14. Preparing to unpack .../77-gfortran-14_14.2.0-6_amd64.deb ... Unpacking gfortran-14 (14.2.0-6) ... Selecting previously unselected package gfortran-x86-64-linux-gnu. Preparing to unpack .../78-gfortran-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gfortran. Preparing to unpack .../79-gfortran_4%3a14.2.0-1_amd64.deb ... Unpacking gfortran (4:14.2.0-1) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../80-libccp4-data_8.0.0-4_all.deb ... Unpacking libccp4-data (8.0.0-4) ... Selecting previously unselected package libccp4c0t64:amd64. Preparing to unpack .../81-libccp4c0t64_8.0.0-4_amd64.deb ... Unpacking libccp4c0t64:amd64 (8.0.0-4) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../82-libmmdb2-0_2.0.22-1+b1_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.22-1+b1) ... Selecting previously unselected package libccp4f0t64:amd64. Preparing to unpack .../83-libccp4f0t64_8.0.0-4_amd64.deb ... Unpacking libccp4f0t64:amd64 (8.0.0-4) ... Selecting previously unselected package libccp4-dev:amd64. Preparing to unpack .../84-libccp4-dev_8.0.0-4_amd64.deb ... Unpacking libccp4-dev:amd64 (8.0.0-4) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../85-libmmdb2-dev_2.0.22-1+b1_amd64.deb ... Unpacking libmmdb2-dev (2.0.22-1+b1) ... Selecting previously unselected package sfftw2. Preparing to unpack .../86-sfftw2_2.1.5-7_amd64.deb ... Unpacking sfftw2 (2.1.5-7) ... Selecting previously unselected package sfftw-dev. Preparing to unpack .../87-sfftw-dev_2.1.5-7_amd64.deb ... Unpacking sfftw-dev (2.1.5-7) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libpciaccess0:amd64 (0.17-3+b1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libibumad3:amd64 (52.0-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libibmad5:amd64 (52.0-2) ... Setting up file (1:5.45-3) ... Setting up libccp4-data (8.0.0-4) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up libmmdb2-dev (2.0.22-1+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libgfortran5:amd64 (14.2.0-6) ... Setting up autoconf (2.72-3) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libccp4c0t64:amd64 (8.0.0-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libdrm-common (2.4.123-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-6) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libllvm19:amd64 (1:19.1.2-1) ... Setting up gettext (0.22.5-2) ... Setting up libclang1-19 (1:19.1.2-1) ... Setting up libtool (2.4.7-7) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libccp4f0t64:amd64 (8.0.0-4) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-6) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up dh-autoreconf (20) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up groff-base (1.23.0-5) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up gfortran-14 (14.2.0-6) ... Setting up libclang-cpp19 (1:19.1.2-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libibverbs1:amd64 (52.0-2) ... Setting up libccp4-dev:amd64 (8.0.0-4) ... Setting up ibverbs-providers:amd64 (52.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up doxygen (1.9.8+ds-2+b2) ... Setting up libpmix2t64:amd64 (5.0.3-2) ... Setting up librdmacm1t64:amd64 (52.0-2) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up debhelper (13.20) ... Setting up libhsa-runtime64-1:amd64 (5.7.1-3) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up sfftw2 (2.1.5-7) ... Setting up fftw2 (2.1.5-7) ... Setting up sfftw-dev (2.1.5-7) ... Setting up fftw-dev (2.1.5-7) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clipper_2.1.20201109-2_source.changes dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_autoreconf_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' debian/rules binary dh binary --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:58: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:58: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... m4/fftw.m4:35: SINGLE_FFTW2 is expanded from... configure.ac:58: the top level configure.ac:116: warning: AC_OUTPUT should be used without arguments. configure.ac:116: You should run autoupdate. configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... unsupported checking for g++ option to enable C++98 features... none needed checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether the compiler supports GNU Fortran 77... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2.debhelper.log debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' doxygen debian/Doxyfile warning: Tag 'TCL_SUBST' at line 203 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 336 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 849 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 945 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1167 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1306 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1404 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1410 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1571 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1583 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1592 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1622 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1627 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1776 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. /build/reproducible-path/clipper-2.1.20201109/clipper/core/cell.h:1: warning: the name 'lib/cell.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_instance.h:1: warning: the name 'lib/clipper_instance.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_memory.h:1: warning: the name 'lib/clipper_memory.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_message.h:1: warning: the name 'lib/clipper_message.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_precision.h:1: warning: the name 'lib/clipper_precision.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_stats.h:1: warning: the name 'lib/clipper_stats.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_sysdep.h:1: warning: the name 'lib/clipper_sysdep.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_test.h:1: warning: the name 'lib/clipper_test.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_thread.h:1: warning: the name 'lib/clipper_thread.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_types.h:1: warning: the name 'lib/clipper_types.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h:1: warning: the name 'lib/clipper_util.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container.h:1: warning: the name 'lib/container.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.h:1: warning: the name 'lib/container_hkl.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:1: warning: the name 'lib/container_map.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.h:1: warning: the name 'lib/container_types.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:1: warning: the name 'lib/coords.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/derivs.h:1: warning: the name 'lib/derivs.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h:1: warning: the name 'lib/fftmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.h:1: warning: the name 'lib/fftmap_sparse.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_compute.h:1: warning: the name 'lib/hkl_compute.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:1: warning: the name 'lib/hkl_data.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_datatypes.h:1: warning: the name 'lib/hkl_datatypes.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_info.h:1: warning: the name 'lib/hkl_info.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_lookup.h:1: warning: the name 'lib/hkl_lookup.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_operators.h:1: warning: the name 'lib/hkl_operators.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:1: warning: the name 'lib/map_interp.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.h:1: warning: the name 'lib/map_utils.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap.h:1: warning: the name 'lib/nxmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap_operator.h:1: warning: the name 'lib/nxmap_operator.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_basisfn.h:1: warning: the name 'lib/resol_basisfn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.h:1: warning: the name 'lib/resol_fn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:1: warning: the name 'lib/resol_targetfn.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/rotation.h:1: warning: the name 'lib/rotation.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.h:1: warning: the name 'lib/spacegroup.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.h:1: warning: the name 'lib/symop.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/test_core.h:1: warning: the name 'lib/test_core.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/test_data.h:1: warning: the name 'lib/test_data.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:1: warning: the name 'lib/xmap.h' supplied as the argument in the \file statement is not an input file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:165: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:166: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b, ftype32 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:173: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:174: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b, ftype64 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:181: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.cpp:182: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b, int &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/clipper_util.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:425: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype32 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< float > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:427: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype32 >(const clipper::Coord_grid &c, float &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:429: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype64 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< double > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:431: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype64 >(const clipper::Coord_grid &c, double &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.h /build/reproducible-path/clipper-2.1.20201109/dox/clipper_contrib.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /build/reproducible-path/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image /build/reproducible-path/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:543: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const Coord_orth &xyz) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:588: warning: Found unknown command '\patam' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:583: warning: The following parameter of clipper::AtomShapeFn::rho_grad(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad) const is not documented: parameter 'rho' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:670: warning: Found unknown command '\patam' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:665: warning: The following parameter of clipper::AtomShapeFn::rho_curv(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad, Matrix< ftype > &curv) const is not documented: parameter 'rho' /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'invresolsq' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: The following parameter of clipper::AtomShapeFn::rho(const ftype &rsq) const is not documented: parameter 'rsq' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: argument 'rate_' of command @param is not found in the argument list of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: The following parameter of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) is not documented: parameter 'rate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.cpp:51: warning: The following parameter of clipper::CHKL_info::CHKL_info(const String name="", const Spacegroup &spacegroup=NullSpacegroup, const Cell &cell=NullCell, const Resolution &resolution=NullResolution, const bool &generate=false) is not documented: parameter 'name' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_hkl.cpp:59: warning: The following parameter of clipper::CHKL_info::CHKL_info(Container &parent, const String name="", const bool &generate=false) is not documented: parameter 'generate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: argument 'grid' of command @param is not found in the argument list of clipper::CNXmap_operator< T >::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: The following parameter of clipper::CNXmap_operator::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) is not documented: parameter 'grid_sampling' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:736: warning: The following parameter of clipper::Coord_grid::deindex(const Grid &g, const int &index) is not documented: parameter 'index' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:736: warning: found documented return type for clipper::Coord_grid::deindex that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'name' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'grid' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/reproducible-path/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: The following parameters of clipper::CXmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) are not documented: parameter 'cell' parameter 'grid_sampling' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: The following parameter of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: The following parameter of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: The following parameter of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) is not documented: parameter 'scale' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: The following parameter of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) is not documented: parameter 'scale' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap.cpp:225: warning: The following parameter of clipper::FFTmap_p1::set_hkl(const HKL &hkl, const std::complex< ffttype > &f) is not documented: parameter 'f' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) is not documented: parameter 'hkl' /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const is not documented: parameter 'hkl' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:703: warning: argument 'hkl' of command @param is not found in the argument list of clipper::HKL::sym_phase_shift(const Symop &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.h:703: warning: The following parameter of clipper::HKL::sym_phase_shift(const Symop &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: argument 'data' of command @param is not found in the argument list of clipper::HKL_data< T >::set_data(const HKL &hkl, const T &data_) /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: The following parameter of clipper::HKL_data::set_data(const HKL &hkl, const T &data_) is not documented: parameter 'data_' /build/reproducible-path/clipper-2.1.20201109/clipper/core/hkl_info.cpp:80: warning: The following parameter of clipper::HKL_info::HKL_info(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const bool &generate=false) is not documented: parameter 'generate' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: The following parameters of clipper::Interp_cubic::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'map' parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: found documented return type for clipper::Interp_cubic::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:260: warning: The following parameter of clipper::Interp_cubic::interp_grad(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad) is not documented: parameter 'map' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:340: warning: The following parameters of clipper::Interp_cubic::interp_curv(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad, Curv_map< T > &curv) are not documented: parameter 'map' parameter 'curv' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: The following parameter of clipper::Interp_linear::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: found documented return type for clipper::Interp_linear::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: The following parameter of clipper::Interp_nearest::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: found documented return type for clipper::Interp_nearest::interp that does not return anything /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:55: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:56: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:64: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.cpp:65: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/map_utils.h:113: warning: Found unknown command '\params' /build/reproducible-path/clipper-2.1.20201109/clipper/core/nxmap.h:384: warning: argument 'curv' of command @param is not found in the argument list of clipper::NXmap< T >::interp_grad(const Coord_map &pos, T &val, Grad_map< T > &grad) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: The following parameters of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'damp' parameter 'debug' /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: The following parameters of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'params' parameter 'damp' parameter 'debug' /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: argument 'name' of command @param is not found in the argument list of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) /build/reproducible-path/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: The following parameter of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) is not documented: parameter 'symb' /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: argument 'mat' of command @param is not found in the argument list of clipper::Symop::Symop(const RTop<> &rt) /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: The following parameter of clipper::Symop::Symop(const RTop<> &rt) is not documented: parameter 'rt' /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:215: warning: clipper::Symop_code::symop has @param documentation sections but no arguments /build/reproducible-path/clipper-2.1.20201109/clipper/core/symop.cpp:231: warning: clipper::Symop_code::isymop has @param documentation sections but no arguments /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:86: warning: Found unknown command '\Note' /build/reproducible-path/clipper-2.1.20201109/clipper/core/resol_targetfn.h:62: warning: Found unknown command '\Note' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_frac::transform(const RTop_frac &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: The following parameter of clipper::U_aniso_frac::transform(const RTop_frac &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_orth::transform(const RTop_orth &op) const /build/reproducible-path/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: The following parameter of clipper::U_aniso_orth::transform(const RTop_orth &op) const is not documented: parameter 'op' /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:600: warning: The following parameter of clipper::Xmap::fft_from(const H &fphidata, const FFTtype type=Default) is not documented: parameter 'type' /build/reproducible-path/clipper-2.1.20201109/clipper/core/xmap.h:665: warning: The following parameter of clipper::Xmap::fft_to(H &fphidata, const FFTtype type=Default) const is not documented: parameter 'type' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" -Nlibclipper-doc make -j20 make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make all-recursive make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making all in clipper make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making all in core make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o atomsf.cpp: In member function 'const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const': atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type] 438 | default: Message::message(Message_fatal("unimplemented type")); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_WAASMAIER_KIRFEL]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] 406 | } | ^ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-core.la -rpath /usr/lib/x86_64-linux-gnu libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making all in contrib make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o edcalc.lo edcalc.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o fffear.lo fffear.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sfscale.lo sfscale.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sfweight.lo sfweight.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o skeleton.lo skeleton.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o originmatch.lo originmatch.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/x86_64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making all in examples make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j20 check "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making check in clipper make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making check in core make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making check in contrib make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making check in examples make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o rfltest.o rfltest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sgtest.o sgtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o symtest.o symtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ccad.o ccad.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o diffmap.o diffmap.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o maptest.o maptest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o mtztest.o mtztest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ffttest.o ffttest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sktest.o sktest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cnstest.o cnstest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o maketestdata.o maketestdata.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o sftest.o sftest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o phstest.o phstest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -c -o ciftophs.o ciftophs.cpp f77 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c -o ftndemo.o ftndemo.f /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lgfortran -lm -lquadmath -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cmaplocal cmaplocal.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' rm -fr -- /tmp/dh-xdg-rundir-_je6P0bK create-stamp debian/debhelper-build-stamp dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ debian/.debhelper/generated/libclipper-doc/ debian/libclipper-doc/ dh_auto_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d /build/reproducible-path/clipper-2.1.20201109/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/clipper-2.1.20201109/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making install in clipper make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making install in core make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making install in contrib make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper/contrib; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/x86_64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o phs/.libs/phs_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o cif/.libs/cif_data_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o fortran/.libs/f_interface.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making install in examples make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -m0755 -d debian/libclipper-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libclipper2//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/x86_64-linux-gnu/ dh_installdocs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev cp --reflink=auto -a ./debian/index.html debian/libclipper-doc/usr/share/doc/libclipper-dev cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/clipper-2.1.20201109/debian/libclipper-doc/usr/share/doc/libclipper-dev chmod -R u\+rw,go=rX debian/libclipper-doc/usr/share/doc install -p -m0644 debian/copyright debian/libclipper-doc/usr/share/doc/libclipper-doc/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc-base/ install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/libclipper-doc.clipper dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper2/usr/share/doc/libclipper2/changelog install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -p -m0644 debian/.debhelper/generated/libclipper-doc/dh_installchangelogs.dch.trimmed debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog dh_installexamples "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/c2test.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ccad.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cctbxtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ciftophs.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cmaplocal.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cnstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/diffmap.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ffttest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/fomvar.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ftndemo_lib.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maketestdata.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maphist.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maptest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/memtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mmtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzcut.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtziotest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzmissing.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtztest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/octest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/phstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest2.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/rfltest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sgtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sktest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/symtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.h debian/libclipper-doc/usr/share/doc/libclipper-dev/examples dh_installsystemduser "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_lintian "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" Using 1687186854 as canonical time Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Prob__phi__2d.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__phi.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Ramachandran.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1ABCD.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__spline.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag__bool.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Array2d.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1D__sigD.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomShapeFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Atom__list.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 cd debian/libclipper-doc chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian gzip -9nf usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian cd '/build/reproducible-path/clipper-2.1.20201109' cd '/build/reproducible-path/clipper-2.1.20201109' cd '/build/reproducible-path/clipper-2.1.20201109' dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_dwz -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug -- debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug dh_strip -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/1a/856966bf4aff3ade1f1cb4d60cea4907eedb93.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/1a/856966bf4aff3ade1f1cb4d60cea4907eedb93.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/1a/856966bf4aff3ade1f1cb4d60cea4907eedb93.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f036e3206870265cd7775316dfef703aa8209c.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f036e3206870265cd7775316dfef703aa8209c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f036e3206870265cd7775316dfef703aa8209c.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/99/2d85fa399695cb91bb1ba3ccdf6b054ea33387.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/99/2d85fa399695cb91bb1ba3ccdf6b054ea33387.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/99/2d85fa399695cb91bb1ba3ccdf6b054ea33387.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d2/aef88a0bcac01fe69a4edceacdc38fdaabd185.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d2/aef88a0bcac01fe69a4edceacdc38fdaabd185.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d2/aef88a0bcac01fe69a4edceacdc38fdaabd185.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/cd/0b62b8421262cad8f7520953fd96c205a6e8f6.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/cd/0b62b8421262cad8f7520953fd96c205a6e8f6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/cd/0b62b8421262cad8f7520953fd96c205a6e8f6.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/be/37758183cb6594ffb08f7daf22d55039b53ee1.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/be/37758183cb6594ffb08f7daf22d55039b53ee1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/be/37758183cb6594ffb08f7daf22d55039b53ee1.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/6a83ae318dcf3087cd8c7dde1f031fe9a46fc4.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/6a83ae318dcf3087cd8c7dde1f031fe9a46fc4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/6a83ae318dcf3087cd8c7dde1f031fe9a46fc4.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8f objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8f/4b477bbd787815ad9fa4e185d48fb35610083c.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8f/4b477bbd787815ad9fa4e185d48fb35610083c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8f/4b477bbd787815ad9fa4e185d48fb35610083c.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/f3083059e2f5f78a5ecc45aae8e39c7b0934b1.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/f3083059e2f5f78a5ecc45aae8e39c7b0934b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/f3083059e2f5f78a5ecc45aae8e39c7b0934b1.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libclipper2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libclipper2/usr/lib/debug install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym install -m0755 -d debian/.debhelper/libclipper2 dh_makeshlibs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -m0755 -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers dh_shlibdeps -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers install -m0755 -d debian/libclipper-doc/DEBIAN dh_gencontrol "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -cdebian/control -Pdebian/libclipper-dev install -m0755 -d debian/libclipper-doc/DEBIAN echo misc:Depends= >> debian/libclipper-doc.substvars echo misc:Pre-Depends= >> debian/libclipper-doc.substvars dpkg-gencontrol -plibclipper-doc -ldebian/changelog -Tdebian/libclipper-doc.substvars -cdebian/control -Pdebian/libclipper-doc install -m0755 -d debian/libclipper2/DEBIAN echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=1a856966bf4aff3ade1f1cb4d60cea4907eedb93 52f3083059e2f5f78a5ecc45aae8e39c7b0934b1 73f036e3206870265cd7775316dfef703aa8209c 8f4b477bbd787815ad9fa4e185d48fb35610083c 992d85fa399695cb91bb1ba3ccdf6b054ea33387 b46a83ae318dcf3087cd8c7dde1f031fe9a46fc4 be37758183cb6594ffb08f7daf22d55039b53ee1 cd0b62b8421262cad8f7520953fd96c205a6e8f6 d2aef88a0bcac01fe69a4edceacdc38fdaabd185" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/libclipper2 chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/DEBIAN install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. dpkg-deb --root-owner-group --build debian/libclipper2 .. dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libclipper-doc .. dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-2_amd64.deb'. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-2_amd64.deb'. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-2_amd64.deb'. dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-2_all.deb'. dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-2_amd64.buildinfo dpkg-genchanges --build=binary -O../clipper_2.1.20201109-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2353374 and its subdirectories I: Current time: Thu Oct 24 03:05:28 -12 2024 I: pbuilder-time-stamp: 1729782328 Thu Oct 24 15:05:31 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Oct 24 15:05:31 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Oct 24 15:07:45 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Oct 24 15:07:46 UTC 2024 I: clipper_2.1.20201109-2_amd64.changes: Format: 1.8 Date: Mon, 19 Jun 2023 11:00:54 -0400 Source: clipper Binary: libclipper-dev libclipper-doc libclipper2 libclipper2-dbgsym Architecture: amd64 all Version: 2.1.20201109-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2 - object oriented library for crystallographic computing Changes: clipper (2.1.20201109-2) unstable; urgency=medium . * Switch debian/watch to HTTP site as FTP seems down and SSL certificate has expired. Checksums-Sha1: 8b652194adfb35d190812aecf163c404c20babe6 7567 clipper_2.1.20201109-2_amd64.buildinfo ec47e918bcf12ccec436637df255e37d59dad171 82128 libclipper-dev_2.1.20201109-2_amd64.deb 705fde89d62cf248ec153e4fcc1d46f8f66c987b 685840 libclipper-doc_2.1.20201109-2_all.deb a7d6e192ebfbf8a61cd2d344a03c52216e19e8c2 8738736 libclipper2-dbgsym_2.1.20201109-2_amd64.deb 9cfd78245ce44ba9071ecd1fa8a59cecf13c2bff 1178408 libclipper2_2.1.20201109-2_amd64.deb Checksums-Sha256: b780d2acb49d9fb935befd350e50425b5be5fe93facfe497f2c61ab4ab897a44 7567 clipper_2.1.20201109-2_amd64.buildinfo b2172a99f487db87f3df80dd7dcc656e4025919e9845125e33ed3e355e9e62c4 82128 libclipper-dev_2.1.20201109-2_amd64.deb cc4d8f0681f2b2c725f4424335eb714cd23fc5c2eb590418dbd06327aec8d7b6 685840 libclipper-doc_2.1.20201109-2_all.deb 3a79ec5f1166be4ad22a923e0e64731d2abe52459f23b0172ff96a62c153aa58 8738736 libclipper2-dbgsym_2.1.20201109-2_amd64.deb 1c7bc136112dc18dbd0db5e82a99752744530fbbf1b8823f009293e7b6a46a3e 1178408 libclipper2_2.1.20201109-2_amd64.deb Files: ac96dafc4e823b4269b560a41a2e0a8e 7567 science optional clipper_2.1.20201109-2_amd64.buildinfo 45adaa973a77c6c4a41960a4daa82594 82128 libdevel optional libclipper-dev_2.1.20201109-2_amd64.deb 3a85f165ae021f0e16de2a36a904c929 685840 doc optional libclipper-doc_2.1.20201109-2_all.deb ba6fa50a1e8add0a0fc6ddd2dc2f0977 8738736 debug optional libclipper2-dbgsym_2.1.20201109-2_amd64.deb 393528630d5226e7315b6be0ae447eda 1178408 libs optional libclipper2_2.1.20201109-2_amd64.deb Thu Oct 24 15:07:49 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_5-22661.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/clipper_2.1.20201109-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/clipper_2.1.20201109-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/clipper_2.1.20201109-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/b1/clipper_2.1.20201109-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tK3P6z6z/b2/clipper_2.1.20201109-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.576s) 0.576s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.157s) 0.157s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 945ms CPU time consumed: 904ms Thu Oct 24 15:07:50 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 24 15:07:50 UTC 2024 I: clipper from trixie built successfully and reproducibly on amd64. Thu Oct 24 15:07:51 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Oct 24 15:07:51 UTC 2024 I: Submitting 12K b1/clipper_2.1.20201109-2_amd64.buildinfo.asc Thu Oct 24 15:07:52 UTC 2024 I: Submitting 12K b2/clipper_2.1.20201109-2_amd64.buildinfo.asc Thu Oct 24 15:07:53 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Oct 24 15:07:53 UTC 2024 I: Done submitting .buildinfo files. Thu Oct 24 15:07:53 UTC 2024 I: Removing signed clipper_2.1.20201109-2_amd64.buildinfo.asc files: removed './b1/clipper_2.1.20201109-2_amd64.buildinfo.asc' removed './b2/clipper_2.1.20201109-2_amd64.buildinfo.asc'