Tue Nov 18 09:41:20 UTC 2025 I: starting to build python-dnaio/forky/arm64 on jenkins on '2025-11-18 09:41' Tue Nov 18 09:41:20 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/131285/console.log Tue Nov 18 09:41:20 UTC 2025 I: Downloading source for forky/python-dnaio=1.2.4-1 --2025-11-18 09:41:20-- http://deb.debian.org/debian/pool/main/p/python-dnaio/python-dnaio_1.2.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2432 (2.4K) [text/prs.lines.tag] Saving to: ‘python-dnaio_1.2.4-1.dsc’ 0K .. 100% 272M=0s 2025-11-18 09:41:20 (272 MB/s) - ‘python-dnaio_1.2.4-1.dsc’ saved [2432/2432] Tue Nov 18 09:41:20 UTC 2025 I: python-dnaio_1.2.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-dnaio Binary: python3-dnaio Architecture: any Version: 1.2.4-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Étienne Mollier Homepage: https://github.com/marcelm/dnaio Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-dnaio Vcs-Git: https://salsa.debian.org/med-team/python-dnaio.git Testsuite: autopkgtest, autopkgtest-pkg-pybuild Testsuite-Triggers: unicycler-data Build-Depends: debhelper-compat (= 13), architecture-is-little-endian, dh-sequence-python3, python3-all-dev, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-pytest , python3-xopen , cython3 Package-List: python3-dnaio deb python optional arch=any Checksums-Sha1: 519e0c780a7ef4678bbd1d70f5e78f467ca3484d 56399 python-dnaio_1.2.4.orig.tar.gz f97652408e523b0e30f6e217cb5921720d62acf1 4572 python-dnaio_1.2.4-1.debian.tar.xz Checksums-Sha256: 906f9d8d98309caaf58a4368366fbd70129faa50e25f30c27d2f14f69768fe14 56399 python-dnaio_1.2.4.orig.tar.gz b04e0ac448512c1ca0dea6f65c3bd356706467fa4dad204f1fdeefad97884fc5 4572 python-dnaio_1.2.4-1.debian.tar.xz Files: 66c61cc1014eaddd80f8eb76188ea318 56399 python-dnaio_1.2.4.orig.tar.gz 3f987c23f33ec55f0c187cc187b854b1 4572 python-dnaio_1.2.4-1.debian.tar.xz Dgit: fdd8cdb21d8588085e7ff5ba0fd659b1ecfdef42 debian archive/debian/1.2.4-1 https://git.dgit.debian.org/python-dnaio -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkYRrUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdreaRAAgzivlRISp5ZkuYeLovack8rhioA/ IR57ptOCoBXyZ0agw+Od+XnFL8HrSnKhnakRczFiwraG6a9fyFTh9tvgR1pFeMCG L2U4FIZSbzM9V0Ep/H8H8QKo5JsMf+JL5zQmSTzPjzoc2qCV/wtQZfERhQcX2qda oWjMdbAd73rszWA9Q5JOqqzavN9bK5xW4r9SaK4fgq+YV6SsS61IELpv7SH54OOz uxBESlADvF9C/JQWe5oEZldO2Mld0gJ1RK+uGNKt7/hHgDB7el8zf1e75y7dwz3O +vqy7xV9maxakdzWC5o+dIBC70de3qOuOse/LdqkLQiMlu+FQlwreBcNSzsUgQsM Hp6NoFhbDwu8zs4yk0TuYBx7avMM98h2yzYuGqi2R0ug1o6e7rifZranx3A2lFDh mML1upQNxebJgGGZMDdx9s1+pR2cfNfr0DuOC6AqU6+mfe1CkaRT5vIPG7vITTAo 7Ow/hcCx/pda+qs9hN3AZSLpuq4zeiae2oww+V4CBoSee4oJPyYkpbRKrZ3c+j+y Ju+7zFT2jA/vaTN+QX341u0yL1KdTkjujNMhd8ZiyLliBdIfd1Ojza/RNf0q08UE JhoKPXXDeauP7cB3Mb4x7O9dR4mgxY8p3xmQsySTMu7yvvO7xMQ5/NhEqxFsVFIa Mfsx5Vs5VkqEQMA= =xw4j -----END PGP SIGNATURE----- Tue Nov 18 09:41:20 UTC 2025 I: Checking whether the package is not for us Tue Nov 18 09:41:20 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Nov 18 09:41:20 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Nov 18 09:42:13 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 21 04:04:22 -12 2026 I: pbuilder-time-stamp: 1797869062 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dnaio_1.2.4-1.dsc] I: copying [./python-dnaio_1.2.4.orig.tar.gz] I: copying [./python-dnaio_1.2.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-dnaio_1.2.4-1.dsc: no acceptable signature found dpkg-source: info: extracting python-dnaio in python-dnaio-1.2.4 dpkg-source: info: unpacking python-dnaio_1.2.4.orig.tar.gz dpkg-source: info: unpacking python-dnaio_1.2.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3284124/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1c6da5eb56404074a2395d0677115a4a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3284124' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/pbuilderrc_D0DQ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/b1 --logfile b1/build.log python-dnaio_1.2.4-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3284124/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-little-endian, dh-sequence-python3, python3-all-dev, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-pytest, python3-xopen, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 30.9 MB of archives. After unpacking 133 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 27 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.1.6+dfsg-2 [2115 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 39 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.4 [591 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-9 [27.7 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.9-1 [2055 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 62 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.9-1 [504 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-3 [41.3 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Fetched 30.9 MB in 0s (179 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/python-dnaio-1.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dnaio_1.2.4-1_source.changes dpkg-buildpackage: info: source package python-dnaio dpkg-buildpackage: info: source version 1.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-dnaio-1.2.4/.pybuild/cpython3_3.13 * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/_version.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/writers.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/singleend.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/readers.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/pairedend.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/multipleend.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/interfaces.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/exceptions.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/chunks.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/_util.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/_bam.py -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/__init__.py -> build/lib.linux-aarch64-cpython-313/dnaio running egg_info creating src/dnaio.egg-info writing src/dnaio.egg-info/PKG-INFO writing dependency_links to src/dnaio.egg-info/dependency_links.txt writing requirements to src/dnaio.egg-info/requires.txt writing top-level names to src/dnaio.egg-info/top_level.txt writing manifest file 'src/dnaio.egg-info/SOURCES.txt' reading manifest file 'src/dnaio.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'src/dnaio.egg-info/SOURCES.txt' copying src/dnaio/_core.pyi -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/_version.pyi -> build/lib.linux-aarch64-cpython-313/dnaio copying src/dnaio/py.typed -> build/lib.linux-aarch64-cpython-313/dnaio running build_ext Compiling src/dnaio/_core.pyx because it changed. [1/1] Cythonizing src/dnaio/_core.pyx building 'dnaio._core' extension creating build/temp.linux-aarch64-cpython-313/src/dnaio aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-dnaio-1.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/dnaio/_core.c -o build/temp.linux-aarch64-cpython-313/src/dnaio/_core.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-dnaio-1.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/dnaio/_core.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/dnaio/_core.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_core.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/py.typed -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_version.pyi -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_core.pyi -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/__init__.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_bam.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_util.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/chunks.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/exceptions.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/interfaces.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/multipleend.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/pairedend.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/readers.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/singleend.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/writers.py -> build/bdist.linux-aarch64/wheel/./dnaio copying build/lib.linux-aarch64-cpython-313/dnaio/_version.py -> build/bdist.linux-aarch64/wheel/./dnaio running install_egg_info Copying src/dnaio.egg-info to build/bdist.linux-aarch64/wheel/./dnaio-1.2.4.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/dnaio-1.2.4.dist-info/WHEEL creating '/build/reproducible-path/python-dnaio-1.2.4/.pybuild/cpython3_3.13/.tmp-hlu07pl1/dnaio-1.2.4-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'dnaio/__init__.py' adding 'dnaio/_bam.py' adding 'dnaio/_core.cpython-313-aarch64-linux-gnu.so' adding 'dnaio/_core.pyi' adding 'dnaio/_util.py' adding 'dnaio/_version.py' adding 'dnaio/_version.pyi' adding 'dnaio/chunks.py' adding 'dnaio/exceptions.py' adding 'dnaio/interfaces.py' adding 'dnaio/multipleend.py' adding 'dnaio/pairedend.py' adding 'dnaio/py.typed' adding 'dnaio/readers.py' adding 'dnaio/singleend.py' adding 'dnaio/writers.py' adding 'dnaio-1.2.4.dist-info/licenses/LICENSE' adding 'dnaio-1.2.4.dist-info/METADATA' adding 'dnaio-1.2.4.dist-info/WHEEL' adding 'dnaio-1.2.4.dist-info/top_level.txt' adding 'dnaio-1.2.4.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built dnaio-1.2.4-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-dnaio-1.2.4/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-dnaio-1.2.4/.pybuild/cpython3_3.13/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 645 items tests/test_chunks.py .............. [ 2%] tests/test_internal.py ................................................. [ 9%] ........................................................................ [ 20%] ........................................................................ [ 32%] ........................................................................ [ 43%] ........................................................................ [ 54%] ........................................................................ [ 65%] ....... [ 66%] tests/test_multiple.py ................................................. [ 74%] . [ 74%] tests/test_open.py ..................................................... [ 82%] ........................................................................ [ 93%] ...... [ 94%] tests/test_records.py ................................. [ 99%] tests/test_util.py . [100%] ============================= 645 passed in 1.42s ============================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-dnaio/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dnaio-dbgsym' in '../python3-dnaio-dbgsym_1.2.4-1_arm64.deb'. dpkg-deb: building package 'python3-dnaio' in '../python3-dnaio_1.2.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-dnaio_1.2.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-dnaio_1.2.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3284124 and its subdirectories I: Current time: Mon Dec 21 04:05:12 -12 2026 I: pbuilder-time-stamp: 1797869112 Tue Nov 18 09:42:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Tue Nov 18 09:42:13 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Tue Nov 18 09:43:48 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Tue Nov 18 09:43:48 UTC 2025 I: python-dnaio_1.2.4-1_arm64.changes: Format: 1.8 Date: Sat, 15 Nov 2025 10:20:08 +0100 Source: python-dnaio Binary: python3-dnaio python3-dnaio-dbgsym Architecture: arm64 Version: 1.2.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-dnaio - Python 3 library for fast parsing of FASTQ and FASTA files Changes: python-dnaio (1.2.4-1) unstable; urgency=medium . * New upstream version 1.2.4 * d/copyright: drop the old FSF mail address. * d/watch: convert to v5 Github watch file. * d/s/lintian-overrides: new: explain why the missing Priority field. Checksums-Sha1: 8ac3839f7e87803193f5360b57797e04de92a01c 6475 python-dnaio_1.2.4-1_arm64.buildinfo 52ff545ecdf388e59d298ade50a600f2ec9fea10 289840 python3-dnaio-dbgsym_1.2.4-1_arm64.deb 5eec82a62afb743db12dde4df75d71e7fcf2dc03 70816 python3-dnaio_1.2.4-1_arm64.deb Checksums-Sha256: d366e68683a9320cc35fdf434e59e44ed69fcb3e27f80c71fcee2b21a0b416e9 6475 python-dnaio_1.2.4-1_arm64.buildinfo 73347bdfee308c65f52b7e4ab3a333dd53fa939dbdc240736e82991a1df4dd22 289840 python3-dnaio-dbgsym_1.2.4-1_arm64.deb 0544be87659d617cfddf8d867cfe108c9de9c0e6aeda3c26a4acfaf26e690efe 70816 python3-dnaio_1.2.4-1_arm64.deb Files: c6c13a780ae859c4f5880efdecd1a998 6475 python optional python-dnaio_1.2.4-1_arm64.buildinfo e76bd9896d28d7a53518b4ee4e68efc7 289840 debug optional python3-dnaio-dbgsym_1.2.4-1_arm64.deb bf70d92502407e715fc0ef731e38a32e 70816 python optional python3-dnaio_1.2.4-1_arm64.deb Tue Nov 18 09:43:49 UTC 2025 I: diffoscope 309 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-131285.service; invocation ID: 4897572c201f42229ae32f16ef6ebd58 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/python-dnaio_1.2.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/python-dnaio_1.2.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/python-dnaio_1.2.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/b1/python-dnaio_1.2.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.pgflxCbr/b2/python-dnaio_1.2.4-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 210ms CPU time consumed: 171ms Memory peak: 17.7M (swap: 0B) Tue Nov 18 09:43:49 UTC 2025 I: diffoscope 309 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 18 09:43:49 UTC 2025 I: python-dnaio from forky built successfully and reproducibly on arm64. Tue Nov 18 09:43:50 UTC 2025 I: Removing signed python-dnaio_1.2.4-1_arm64.buildinfo.asc files: removed './b1/python-dnaio_1.2.4-1_arm64.buildinfo.asc' removed './b2/python-dnaio_1.2.4-1_arm64.buildinfo.asc'